Array 1 198757-199527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLI01000017.1 Haloferax larsenii JCM 13917 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 198757 30 93.3 60 ...........................NT. GACGGAAACACTTGAGTGGGAACGGGGTGTAGGAGGGCTATAGTGGCCGGATTGGCCATG 198847 30 100.0 36 .............................. CCCGAAGCCGCACCGTGCGACGTCGAAGTCGACGGT 198913 30 100.0 35 .............................. GAAGGGACGGCCTCCGAAGCACAGGGCCTCGCCGG 198978 30 100.0 35 .............................. CTGTTGGGGGCGGTGGGTGCAGCGGCCACGGGCTT 199043 30 100.0 35 .............................. GAGCTGGCGTGTCGTGATGACACCGTCGCGAAGAC 199108 30 100.0 37 .............................. TCCTGGAGGGTGACGATGCAGCGGACGGGCTCGGACA 199175 30 100.0 33 .............................. CCCGTCACGGCGGTTGTGACGCCCCTCGGAAGT 199238 30 100.0 36 .............................. CAAAATTACATTGCATGGATACCAGACAACGCTGAT 199304 30 100.0 37 .............................. ACCTCAATAAAATCCTCGCCGGGAACTGACCCGTCTA 199371 30 100.0 34 .............................. GACGTGGTCGACTTCAAACATGGCGGCGTCCTCG 199435 30 100.0 34 .............................. ATCCTGAAGCACGGTCGGGCGGTGCAACGCCCGG 199499 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== ============================================================ ================== 12 30 99.2 38 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : TCGACTAGATACGCTCTACGTACGTGACGAACTGTGGGACGTCTGGAAACGCTATTTTGAGGACGTATTCGAACCGGAACCCCTCAAAAAGAGCTAACTACTCTTCGTCTTCTTCCGGGTCGTCTGCGAGGGCAGCATATAGCTCGTGGTTTTCCTCCACATCGCGAGCCATCTGTTTTTCTGCTTCCCAATTAACGCTCATACTCCATCTAATGGCTATCGCTGTATTAGGATTTCCGGTGGTTCGATAGGAGCCGAATCTGTGGCCCACTGTCGTCGGTGTGTTCGATGGCTTGGGTTGGTGAGGTGTATTCTACCCCTCGTCTCTCTGGCTCATCTTGAACATCGGGCCGTTCGCTCATGGTGGGGGCCAAGGAGTGTTCCTGCTGAACGCAATCGGTTCCTTCGACCCCCCGGGGGTTTGGGGGGTATTGGGGATCGACGGAAACACTTGAGTGGGAACGGGGTGTAGGAGGGCTATAGTGGCCGGATTGGCCATG # Right flank : CAGCTCCCAGGACGCCGGAAACTACACCGCCGAAGTGTTACAGACGAACTCGAATTGAAGAAGACCGAATATCGACAGGTGAACAAGACGAGTTCCTGACGACCGTATGGAAATCCGTGATTTCCGTGACGACGAGATGCGCTGCATCGTGAACCATCTGACTCCCAAATGGGTCGCCATCAATACATCTACAAATCTACACTCTGTAACTGGTTCTTAATATGACATCAAATCGAACAGGACCACGGAGCCTCAGCCGCAGTAGTGTACAATGTGCAGGCATCGTGTGTGTCGCTACGGTACTCGTCCCCGTTTTCTTCGTCCTCGTAAGCCTCGCTTTCACCCCTGTCCCACTCTGGCTGTATGACAATCGCCTTGTTGCAGCACTCGCAGTGGTGTTGGCCGCCGGCGCTGGCTATGGGAGTGCGCGGACCATTGGGACGCCCCGTACGGCGGGCTGGACCGCACTCCTCATCTGTGTGACTGGGAGTGTCGTTGGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1816-1059 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLI01000015.1 Haloferax larsenii JCM 13917 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1815 30 100.0 35 .............................. GTCAACCCGGATAGACTCAACCGACTTTGCGGAGA 1750 30 100.0 35 .............................. GTCGTTGTTGCGTGGGAATTCGGCGGCGTCGGAGA 1685 30 100.0 36 .............................. GACTGTCGTGTCCGCCTCGATGAGCGGATTCGGCGG 1619 30 100.0 37 .............................. CCGTACTCGTCGGTGGGGAACTCACTCATGATGAGTC 1552 30 100.0 38 .............................. ATCCCCCGTGTCAGAGGCAGGGTCTGAGTCCTCGTCCG 1484 30 100.0 35 .............................. CCACACGCCGCGACCGACGCGCCGGACCCAGCCAT 1419 30 100.0 37 .............................. TTCGAGAATCGGTCGCCTTCTCGGTCGGGGCGGGTTG 1352 30 100.0 37 .............................. GCGGTGTCCCATGTCCACGAACCGGATAGCACGTCAT 1285 30 100.0 36 .............................. TTCATATTTGGTTAGGGTGCCCAACCACCCAAAGTA 1219 30 100.0 38 .............................. CATCCACGCGCTTACCATGGCCTTGACGTCGTCTTGTT 1151 30 100.0 34 .............................. AGCGTCTCTGACGACGGGTCGGACCTGAGCGGTT 1087 28 86.7 0 ..............G-.-.......A.... | A [1066] ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.9 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GACAGCGGGAGAACCGGAATGGGGATGCTCCCACGCTTCTCGGAGAGCGCACCGGTCAGCAGCCACGAAAACCCGTTTGCGTCGTAGTCGGGCTTTCGCTCCGCGAACAGGGCTTCGAGTCCAGCAAACGCAAGCCGAACCCCGAGTTCGATCCAGTAGACCGTCAGGAGCGCGACGAGCGACCAGTCGAGCGCGACGACACCAACTAGTGGAACCGCATTGAGCGCCGCCAACGCGATGAGGCGGCCCCGTCGTTTCTCGCCGTCGGTGAACTGCATTGGAGGTTGGGTTGGCTTCTGACTCAGGGCAGTTAGGTTGACGGATTTTTGTCGTGTGTGGCTGGCTGCGAGCCTGCTGGTGGGGTTAGCAGGGACCGACACCCGTGAAAAACGTCTGCGCTCTCTGTCGACCCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACGGAAACACTTGAGTGGGAACGGGGTGTAGGGGGGCTGTGGTGGCCATATTGGCCATG # Right flank : AACACTCACGCACCGACCAACACGAGTTCCTTCGATAGAGACAGCTGAACCCGCTACACCCGGTCAGAAAAGAACGCAGCCAGCTCTCGTGTCGCACGCTGCTCGCGGTCGCGGCGTTCGTCGTGCGTGATTTCTTCGACACCCTCGGGAACGGCCCTGTCGAACTGGTCGTAGTAGCCCGCTGGAACGACCCAATCGTTGTAGTAGTCCGGTCGCTCGCGCTCGATAATCGACCGCGCGACGCGTGCTCCGTCACCGGCGTTCACGAGCGCCTGATGATACGTTTCGGTGATTCGACCTGCGGCGTAGACCCCGTCGACGGTGGTCTCGCCGTCGTCGTCGGTTACGACTACCTCGACATCGCCCGGGTGTTCCTCTTGTACAGTCTCGACACCAAGCGGAGAGAGGTAGTCGGTCTCGGCCCACGAGGTCGCGAGAACGTAGCGAACGTCGAACGCCGCATCTCGGCTGTGAACGCGGAATCCGTCACCGGAGGGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1215-1972 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLI01000019.1 Haloferax larsenii JCM 13917 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1215 30 100.0 37 .............................. CGGTTTCTCGCGGCGTTCGTCGCCGGCGTCAACGCCG 1282 30 100.0 35 .............................. GGGTACTGCGGCGACTGCGGCGCTCGCCTCGAAGT 1347 30 100.0 37 .............................. GTCGACCTCGGTGAGGGTCGCGATGAATTCAGTCGAA 1414 30 100.0 33 .............................. AGGACGAGTGTGTTGACCGTCCCAACACGGTCG 1477 30 100.0 36 .............................. CACAAAATTCGAGGCTACGACGACGATGTCGACGAG 1543 30 100.0 35 .............................. AACGGCGGGCCGTCCGGGCTTCGGCACCTACCACT 1608 30 100.0 36 .............................. CCATAGAACGATGCTCCTGTGCAATCGTCAAACTCC 1674 30 100.0 39 .............................. CCTCGGCCGACGACGTCGTCGCAGCGCCGGCGTCTCGAC 1743 30 100.0 38 .............................. GAACTGAGACCTGCCCCGGCTGGTTGTACTGATTCGCG 1811 30 100.0 36 .............................. CAGTAGTTCGGCCCGCGTTCGTCGATAACCGAGACA 1877 30 100.0 36 .............................. CAATATCCGAGAAGGACCGTGCCGGTCAACGCGCTC 1943 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : AAGCGAAAGCTGCGTTCGAAGACGCACTCGATGACGGACAGCACACGGTTCGCGGAGATACGCTTCCGCCACAACTCGTGGGGAATCGATACGTGCGGTACGAGGGGACAACTCACCGTCTCGAAATCGCGTTGTTCGAGATTCCCATCTGGCGACTGTCGGTTGAGAAGGCATCCACGTAGCGGCGTGTCCCCCGGGTTCCAAAGAGTGGGTGTGATTTGGGGGCTTTCCCGCTGAACAGCAGGACGCAACGTGATTCCGAGCGTTGTCTGGCTGACCAGTGATTAGTGTTTCTGTGGGTCGCGGTTGCAGCGTTCTTTCGACCCCCCGGGGGTTTGGGGATGATTGGGGGTCGACGGAAACACTTGAGTGGGAACGGGGTGTAGGAGGGCTATAGTGGCCGGATTGGCCATGGTTACAGACGAACCCTAGTTGGGTTGANCGGAAACACTTGAGTGGGAACGGGGTGTAGGAGGGCTATAGTGGCCGGATTGGCCATG # Right flank : CTCCAAGGACCCGGTGATGTCGAAGAATTACAGAATCTCAAACAGCACGGCTACTACTCCGAGTGGAAAGACGAGGTTCGCAACACAATCGAGGACACCGAGTGGCCGACCGTCACGATACCCGAGGGCGAGCGTGTGAATCCCGATGGCCCCTTGTTTGATACCGAAAGAACGTATCCACAGAACGTTGCTCGAGTCCAGCAGCATCAAGAAGGCACCCGATGACTACCTACACGACGTACAAACGATACCAGTAACGACAAGAAATTATGAAAGGCGCAAATATTTCTAAGTTGATACGTGAGCCATCATCTGCACTCCGTTTCATCAAACACCAAAGTCGAGATGCCACCCTTCATTTCTTACAGTGGTCTGGCATTGCAGGAGTCCTTCAAGAGGCAATCGTCAGAGAACCCTATATCCACGGCGACTCATCACGAGTTTCGACTGGTGAAAACACCTCACTCGAAGCCGGAGTGTGGCTCAACACCCGCTCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //