Array 1 175792-174358 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMW01000007.1 Flavobacterium branchiophilum strain ATCC 35036 44282_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 175791 36 86.1 78 .AAT.TA............................. AAGAATCTTACAAGCCCTTATTGTGTCAAGGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT 175677 36 86.1 78 .AAT.TA............................. TTGTAATATCTTTCTATTAGTGGTCTGGCAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGAGTGTTTGT 175563 36 86.1 30 .AAT.TA............................. TTTATTTTCAATTTTAGCTATACCAATGTT 175497 36 100.0 30 .................................... TGAATGTTGGTGTCGTTGTAAAAGACGAAA 175431 36 100.0 30 .................................... CATTCTCCAGTATCTATGTAATTAGGCAAA 175365 36 100.0 30 .................................... TGAGTGGAAGCAAAGGACAAACTACCTTTT 175299 36 100.0 30 .................................... TCAAAATACCTGATTTACTGGTCGATGTAG 175233 36 100.0 30 .................................... TGGAAAATTAGTTAGATTATCGTTTCCTCA 175167 36 100.0 30 .................................... GCATCACGTGCATGTGCTCTGTACCGCCCG 175101 36 100.0 30 .................................... AGTTGTATCTTTGCCACAGCAAAAGAGGGT 175035 36 100.0 30 .................................... AAATAAATAAGTAACTAAATGAATCCAGAT 174969 36 100.0 30 .................................... TACATCGCCAGCTACTATTGTTCCAAATGT 174903 36 100.0 30 .................................... CAAGCACTGATCAACAAGCACCAATTTGCG 174837 36 100.0 30 .................................... CATAGCTAGATAACTTCCCGCTTTTATCGT 174771 36 100.0 78 .................................... AAATGGAATTATCTTTATAGAATCAACTTGGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT 174657 36 86.1 30 .AAT.TA............................. TGAATGTTGGTGTACTGGTCAAAGACGAAA 174591 36 100.0 30 .................................... CCAATTACGCTCGGTTGCAACTTTGTAAAG 174525 36 100.0 30 .................................... TAGTAAATTTGACGCATCGTAGCTTTGAGA 174459 36 100.0 30 .................................... AAGTGGAAATAAATACACTGGACAAGTTTT 174393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 20 36 97.2 38 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Left flank : TGAAAATTGATAGAGGTTTAAAAAGTGGTTTTGCACCAAAGCAAACCAAAGAAGAAATGTTAGCCGAGTTCAAAAAGAGATTGAATGTACTATAGTTATTTTTTAACTCGAGAAGCAAAAGAAGATTTGTGGAGAATTTATGAATTTGGTGTTCATAGATTTGGAGCTACTCAAGCAGATAAGTATTTCACAATGCTTCATGATTGTTTTGACAAAATTGCATCCAATCCCTTCATGTTTCCATTGGTCTCAAATTACAAAAATGTAGAACGATTTTGTGTTTGTGGTGTTGATACGATTTATTACAATATCAAAGGTGATGAAATTAAAATCGTTACCATTATTGGAAGACAAAATTTTTAAAAGTTCTTTGACATACGTTTTCATGGTCTTAAACAGCCAAACCACAAACACGATATAAGAGTAATCTGTGCATCAGTGGCAATTTTAAAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT # Right flank : AGTTGGCTTGTTGCCTTCTGATATTCAAGGGATTAATTGTAAATATCGTTATAAAAAATGCCTCTTTATAGGACTGATAACCCTATATTGAGGCATTTTTTGTTTTCTAAAACAACTCTAGCTGTACAGGCATTGGTACTTTTGGCAACGGAGCTTGGCCCCAATAATTCATAATATTGCCAAACTGTTTGTCGGTTATCCGTACAACACTCACCTTGCCTAGTGGGGGCAACAATTGTACGATACGTTTTTCGTGTACGTCGGCACTCTCGCTACTGGCACAATGTCTTGTATATACAGAATATTGCATCATCGTAAATCCGTCGTTCAATAATTTGTTTCTAAAAACCGAGGCATCTTTACGGTTTTTTTTTGTTGCTGTGGGCAGGTCAAAAAATACAAACAACCACATTATCCGATATCCGTTGAGTTCCATAACTTGGCATATTTTATTTTTTTGCGTTCGCCACTATAACATTGTTGTAGCGAGCTGGCTGTTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 21880-20716 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMW01000035.1 Flavobacterium branchiophilum strain ATCC 35036 44282_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================================== ================== 21879 36 100.0 29 .................................... TTATATACATCTGCTGGGCTTACCCCGTT 21814 36 100.0 30 .................................... AGATATTATCACTCAATACTGCACAATCAA 21748 36 100.0 30 .................................... CCGTTGCATTTTCTAATTTTTTATTATTTT 21682 36 100.0 30 .................................... TACCAGTAGCAAGTGTTCTGATCATAAGAA 21616 36 100.0 30 .................................... CAAGTTCAGCTAATTGGTCTGTTGCCAAAT 21550 36 100.0 31 .................................... TATTCATGTCTTTTTCTCTTGCAAGAATCCA 21483 36 100.0 120 .................................... AAAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACTTTGCGTGTAAAATGGTCTTTGAAATTTTGTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 21327 35 88.9 30 .GGC...-............................ AATCAACCCATATATATTGGGTGTTTTAAC 21262 36 100.0 30 .................................... ACCAATCATTTTTACTTGCCAAACAACTCC 21196 36 100.0 29 .................................... CCAAGCCAGCAATTTGTAAATAAAATACT 21131 36 97.2 123 ..............................A..... AAAGAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACATTGCGTATAAAATGTTCTTTGAAATTTTTTTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 20972 35 88.9 30 .GGC...-............................ CTCCAATTGTTTATCCATTGAAATAATATT 20907 36 100.0 121 .................................... AAAAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACTTTGCGTGTAAAATGGTCTTTGAAATTTTGTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 20750 35 88.9 0 .GGC...-............................ | ========== ====== ====== ====== ==================================== =========================================================================================================================== ================== 14 36 97.4 51 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Left flank : TTTAAATTAGAGAAAGCTATTTTTGAAAAAGACTCAGAAGGATTAATAACTATAGAATTAAATAAAAGACCAAAAGATTTTAATCAAGTTCAATTTGATGTATATCTAAGTTGGTTGCAGCAAAAGAATATTAGCTTTTCTAAAAACATTGTGAAATGGAGTAGAAACAAATTTTCGCACACGGAATTTCCAAATTTTGATTCTATACCAAGAATAACTAATGAACAAATAGAAGATTTTAATTATTATAAAAATGTATTTGGCGGGAAAGACCATATAAATATTTCTATAGCACAAAAAATTATTGTAGAATTTGAAAGTGAAATAAATAATATCATAGCACAAATAAATAGATAAACCTCCAAACCCCGCTCTTTGACATCTTGAAAACTACAATTAAAAAAATGACTATATTAGCACCCAACAAGAAAATATTTGCCCATTTTATTTAATAAAAATGAGCTTTACCACTTTGAAATACAAGGCATTACAACGTTACT # Right flank : AAAAAGCCCCCAAAGAAGGAACTGCTATTATTGCGATTCAAATTTGTAATTTTTTTGCAACACCCAAATAAAAAAGCCTCTCCACTTATTGGAGAGGCTTTTTTTATGTCTGGTTCACATCTACGTTTTGGAGGTTAGGGTGCACTTTCAATATTTTGAACAGCAGTTGTTGCTATTTCTAAAAGGTCTTGTATTGCGGTGCTACTTTGTAGTGGTCGTATTTCAAATTTAATAATTTGGTCATTTCTATATACGCTTTTAATTTTACCTATAAAAAATGATCCGTTTTTCAAAAATACTTGTCAGTTTGGGGCTGTGGATTGAAAAAAAAAATCTAGTTTATCAAAAATAGTTCTCATGCCTTAATGGTGTTTTCGGTTCAAAATGACGTTGCCAACTGGCTGATATACCAAAGGAATATACTCGAGTGCCGCATCACTTTTGTCGAGTCCAAAGGCTTTCTCATATACATTGATATTGATACGCACTGCTTTATCTTA # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-1.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 46-594 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMW01000171.1 Flavobacterium branchiophilum strain ATCC 35036 44282_contig_171, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 46 36 100.0 26 .................................... TCAAACTCCTTTAGCTGCTCTGGAGT 108 36 100.0 27 .................................... AGGTTTAGGCTTTTCATTCCTTGTAAC 171 36 100.0 27 .................................... ACCAATGCTTTTTTAACGCCTTTCCGT 234 36 100.0 30 .................................... TGGGTTGAAAGCTATATTTGTCGCTACGTG 300 36 100.0 31 .................................... GTAGAAGCAACCAAAATTGATTCACAAGGCA 367 36 100.0 29 .................................... AGGGTTGTAATTCAATACCATAACCATTT 432 36 100.0 27 .................................... TGTAAATTATTACCAACCGCTATCCAT 495 36 100.0 28 .................................... TAACGATATCACCTCTACCGAATTGGTG 559 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 28 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : TTTCTACTATTGTAGATGTTGGTAGGCTTTTTTTGTCTTAAAAACG # Right flank : GTAAACGACCGCAATCGTCTAAGGCTTCGTTTAAAACCACTTTAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //