Array 1 88495-89928 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     88495	    29	 100.0	    32	.............................	CCGCGAGCTAATCAGAAAGCAAAAAGAACTAA 	
     88556	    29	 100.0	    32	.............................	CTCTGCACGGCCGCGCGCCAGCTGGATCGAGA 	
     88617	    29	 100.0	    32	.............................	CGAATAGAAACCGCCAATAGCCAGATCGCTGG 	
     88678	    29	 100.0	    32	.............................	CCGATCGCGCCGGCAACGATCTGGCCACACAG 	
     88739	    29	 100.0	    32	.............................	CCAATGACACAAATAAAACAAACCTGGCCGGG 	
     88800	    29	  96.6	    33	............................A	GAGGCGTGTTTGCTCATAGGTAGGGCGGTTAAC	
     88862	    29	 100.0	    32	.............................	ATTTATAGCGATGATCCGAATGCCTACGGGCT 	
     88923	    29	 100.0	    32	.............................	CTGGCCCACGAGTAGCAATATCCAGATCATCA 	
     88984	    29	 100.0	    32	.............................	GAGGTTATTCACCTTCGTGATTTCCTTAATGT 	
     89045	    29	  96.6	    32	............................T	TACCTGCGAGATCGTCGGCACTGGCAAAAATC 	
     89106	    29	 100.0	    32	.............................	CGATCTGCGGTTGCGGCGGAGCCGGCTCTATG 	
     89167	    29	 100.0	    32	.............................	TGATCCAACTGCTGGCCGCGTACATCAAAGAC 	
     89228	    29	 100.0	    32	.............................	TTATGAGTGAAACAAAATCATACGATTACTTG 	
     89289	    29	 100.0	    33	.............................	GGCTGGGAATCCGTCGGCCCGCGCGATATTGCC	
     89351	    29	 100.0	    32	.............................	GCCAGAACTTAATCTGGCCTCATTTTAGTATT 	
     89412	    29	 100.0	    32	.............................	CCCTGGCATAACGGGAGCCAGGTCGTAATAAT 	
     89473	    29	 100.0	    32	.............................	ATGCAGCTTGGGAGTTAGCACCAGAATGCCTA 	
     89534	    29	 100.0	    32	.............................	GATGTTTTCACATCTGTTGATATGGTTTTCCA 	
     89595	    29	 100.0	    32	.............................	CCATTCCGGTAACTCTGCTGTCATCGGGTCGA 	
     89656	    29	 100.0	    32	.............................	CAGTGTTAAACCAGTCCCGTAATTGCTGATTT 	
     89717	    29	 100.0	    32	.............................	CCGGCATTCAGCGTAAAATCGCGGTCGGTGAT 	
     89778	    29	 100.0	    32	.............................	CCAGTCGACATAATCTCCATCACTGTTTTTCA 	
     89839	    29	 100.0	    32	.............................	GCCAAAGATGCCGAGGGCATGAAACGTAAAGA 	
     89900	    29	  96.6	     0	....................A........	|                                	
==========	======	======	======	=============================	=================================	==================
        24	    29	  99.6	    32	GTGTTCCCCGCGAGAGCGGGGATAAACCG	                                 	       

# Left flank :   AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACGACGCCGGTCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGATGATGATGCTGATACTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTACGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGTGTAGTGGATGTATGTTATTGTTTTAAAATAAGAACCTGGTGGTTTGGCTTTATTGTAATGAATGATTTTTTTATTTCATAAATTTCAAATGGTTATATAGTCTTCCGGATAATTAAATCGCGGTGAAATTTTGTAATGTTTAAAAGTATATTTAATTCAATTAGATATATTGAGA
# Right flank :  GCATGTTCGCGATTTCTGGTTGCGGGGAATGGCGAAAGGTTCGTTCGGAACGGCGTGCATTGCCGCAAACAATGGGAATGCCGGAGTACCCGGATTGTCAGGTGCCACGGGATCTCACCCGAGAGGGGGGCTGCGCGGGCTTGAGAAGCCCTGCATCAGTACATCTATGAAGTGGGGGCTTGAGGATTATTAAAGATATGGTATTGTGTAATAACCGTGATAATCAGCAGGAAGTCAATCCATGAACGTCGTTCACGACCATCCAGGGGTCTCTACTCTTGTTGGAACCCCAAAAGAAATACAGGACAAGCTCCGGAAGTCGCATGCCGACAAGGTGATGGTGCTCACTTTCGAGCACATGAATGCCCATGTGCTGAAGACCTTGGCCGAGAACATGTCAAACGTTGCCTCGTCGATGTTCGAAGTGCTGCTGACACGGCAGGATCGCGAAGTCGTAGAGCTTCTGGCTGACGCGCTCGTTCCGCGAAAGCCGGCTTCAC

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGAGAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [78.3-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 103006-104378 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    103006	    29	 100.0	    32	.............................	TAATCAAAAATCCCTCCTTTCAGCGCCTGATG 	
    103067	    29	 100.0	    32	.............................	CGCAATGTCACTTTCCCCCGCGCAGCGCCACA 	
    103128	    29	 100.0	    32	.............................	TCGCCGCCGCTCTTCTTGTCCTTGCCGGTCAG 	
    103189	    29	 100.0	    32	.............................	GGTTCGATCGCTGGTCGGACGCCGATAGGATG 	
    103250	    29	 100.0	    32	.............................	TAGATGGAGGGTTGGGGGCGTTATTTACGTTG 	
    103311	    29	 100.0	    32	.............................	ATGTACCATCGGAAACATAACTGTATGTAATT 	
    103372	    29	 100.0	    32	.............................	TCGGGCGCATATCGCGCACCCAGTCATCACAT 	
    103433	    29	 100.0	    32	.............................	AAATATCAAGACCGTTCCCCGTATTATATGCA 	
    103494	    29	 100.0	    32	.............................	CATAATGCAATAAAAACGTGTTTGCAACGATT 	
    103555	    29	  96.6	    32	............T................	CAACGAATGCCACTATCACGGGAGAATTGAGC 	
    103616	    29	  96.6	    32	............T................	TTTGGCCGCTGGCAGTGGTTCATTCTGTCGGT 	
    103677	    29	 100.0	    32	.............................	TTATGCCCCTCTCATACTTATGTTATTTTCAG 	
    103738	    29	 100.0	    32	.............................	GCGTATGCACCAACGCCAAGGAGCGAAGGGGC 	
    103799	    29	 100.0	    32	.............................	TCAGCGCGTACGCCGTAATAGCCCTCCTGATC 	
    103860	    29	 100.0	    33	.............................	TAAGCCGGGTTAATGCGGATGCCGTGGCGTTGC	
    103922	    29	 100.0	    32	.............................	CCGATCGTCTGTCATTCCTGCCGTATCTGTTC 	
    103983	    29	 100.0	    32	.............................	CACTAATTAAGATACCACTCCACGAAAACCTT 	
    104044	    29	 100.0	    32	.............................	TCCTGGCCGAAGAGTTCAGCGCCGCCAAGGCA 	
    104105	    29	  96.6	    32	............T................	GTCGTAGACAAATACCGGCGTCTGATCGTCCT 	
    104166	    29	 100.0	    32	.............................	GTGCGCGACCGTCGGCGCTTCCGCTTCAGCCC 	
    104227	    29	  96.6	    32	................T............	GGTAACTGGGCCATCATTTGGGCGCTGTTCAT 	
    104288	    29	  96.6	    32	.............T...............	CCTAAAAAGAGAACGGGGTGACGCCATGATGA 	
    104349	    29	  79.3	     0	...............A....C....TGAC	|                                	T [104366]
==========	======	======	======	=============================	=================================	==================
        23	    29	  98.4	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   TTGATTGAGGAGGTTCTGGCCGCGGGGGGAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGCCACAGGAGTCGGAACTGATGGGAATGCTGGTTGTCGTGACGGAAAACATTCCTCCACGGCTGCGAGGCCGGTTGGCTGTGTGGCTATTGGAGGTGCGGGCCGGGGTCTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACCGCCTTAGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGGCGTGAACCGGTAGATCTCGATGGGCTAAGGTTGGTCTCTTTCCTCCCTATTGAAAATCAGTAAGTTATCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGAGTCTTAAAAAGTTCTATTATAACAAGCAGTTATGCCTAGA
# Right flank :  CTTTTAGTGAACGGTATGTCAGAACAATCACTCATCAGTGGCTAAATACCGGCAGTACTTAAAAATAAAACGCTCTCATATCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGCTCGTTGGCGCGGAAGGCGTCGATCTGTGCCAGCGTCTCGGCGCCCTGCGGCGACAGTCGCAGGATGTCCACCAGCCCCTGCATGCTTGGCAGCTCGTTGCCGAGGTTGTAGCAGTAACCGCTCATGGTCTGGATGCCGTTGAGTACGAACACCTGCTGCTGTTCCTGGGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTC

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 3 107782-109582 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    107782	    29	 100.0	    32	.............................	CCTGCCCCTGAACGTCATTCATTAACCAGGAT 	
    107843	    29	 100.0	    32	.............................	AGATTGACATCGGAATCGGCCAGCCTCGAATG 	
    107904	    29	 100.0	    32	.............................	GTTTTGAGGTCGCTTATTCGCCTAGCATTGCT 	
    107965	    29	 100.0	    32	.............................	ACGGGCTATATTTGCTAACAGGCATCGCGCGC 	
    108026	    29	 100.0	    32	.............................	ATATCTCCGGGTTGAAACGCGACTATGCCGGC 	
    108087	    29	 100.0	    32	.............................	AAAAGCTGGGACAACCAAGCAGGACTCCTGCG 	
    108148	    29	 100.0	    32	.............................	TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA 	
    108209	    29	 100.0	    32	.............................	TTCACCGAGCTGTTCGAGGACAACATGATCGA 	
    108270	    29	 100.0	    33	.............................	CCATCAGCGAAACCACCGGGTTCCGCCCAACGC	
    108332	    29	 100.0	    32	.............................	TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA 	
    108393	    29	 100.0	    32	.............................	CCCTGCACCACTGTCATTGCTGTCCAGCGGCA 	
    108454	    29	 100.0	    32	.............................	CCATGAGCAAGACCGGACGCAATGGTTTCACC 	
    108515	    29	 100.0	    32	.............................	CACGCTCAACGGGCTGGCCGATGGCACGCTAA 	
    108576	    29	 100.0	    32	.............................	CCGATCACCTGGACTACTCAGTGCTGGAAGAA 	
    108637	    29	 100.0	    33	.............................	CGTAAAGCGCATAACTACCATGCTGTATCCGCC	
    108699	    29	 100.0	    32	.............................	GCCTGGTAGTTCATGCGGCCATCTCTCGTGGT 	
    108760	    29	 100.0	    32	.............................	GCGATCGGCAACGAGTGGAATTATCTGCAGGG 	
    108821	    29	 100.0	    33	.............................	CGTTGCCGCCCGGAGTTGCGCCAGTGTTTTGGC	
    108883	    29	 100.0	    32	.............................	CAGATGCGCATGACCAAATCCTTCCAGGAAGT 	
    108944	    29	 100.0	    32	.............................	TCTGCTTATCAGCCTACACTTGATATATTAAG 	
    109005	    29	 100.0	    32	.............................	GTCACGGATAACAGCCGTCATGTCGGTGTTGT 	
    109066	    29	  96.6	    32	...........A.................	CGCACCTGGACGCTATCGCCAAGCTCAATGTC 	
    109127	    29	 100.0	    32	.............................	TTCCTGCGCCATCTGTTCTTCTTCTGGCTCCA 	
    109188	    29	 100.0	    32	.............................	ATACGCGCCGAGGCATTATTTTGCACTTTGGG 	
    109249	    29	 100.0	    32	.............................	GTGGAAATTTACCTGGTGATCCGTACCTACGA 	
    109310	    29	 100.0	    32	.............................	TATGTTTCCGCAATTTATCAGCGCCTATTTGC 	
    109371	    29	 100.0	    32	.............................	AAATGGAGCATCACGGTCGGCCTGGTGCTCAC 	
    109432	    29	  96.6	    32	.............C...............	CCGATAATGATGCGGTCGAGCGCCTGACGTTT 	
    109493	    29	  89.7	    32	............TC.....A.........	CAGCACGTCACCCGACGAGCTGGAGCAGGCGC 	
    109554	    29	  69.0	     0	........T.T.TA.A......GG...AA	|                                	
==========	======	======	======	=============================	=================================	==================
        30	    29	  98.4	    32	GTGTTCCCCGCGCTAGCGGGGATAAACCG	                                 	       

# Left flank :   TACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCCTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTCTAACTTGTTGATAATTAGTTTTAATTTGGTGGGAAAGGATTTCACCAAAGTGCTTTTTAAAATTTACTTATAAATCAAATGGTTGTATTTTCACGTAAGACGAGAATATTTGGTGGAATTTGAGGTCTTTAAAAATTCATTTTAATTCAACCATATATTCTAAG
# Right flank :  ATTGAGTGCTCGCAATCACATAGGCAGCATTTGAAATGCAGGGGGAAAAATCACGTAATGAAACCTATTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGTTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGGTGCTGTGCCAGTCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCTTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATACCGTACAGCG

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCTAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-14] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//