Array 1 88495-89928 **** Predicted by CRISPRDetect 2.4 ***
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
88495 29 100.0 32 ............................. CCGCGAGCTAATCAGAAAGCAAAAAGAACTAA
88556 29 100.0 32 ............................. CTCTGCACGGCCGCGCGCCAGCTGGATCGAGA
88617 29 100.0 32 ............................. CGAATAGAAACCGCCAATAGCCAGATCGCTGG
88678 29 100.0 32 ............................. CCGATCGCGCCGGCAACGATCTGGCCACACAG
88739 29 100.0 32 ............................. CCAATGACACAAATAAAACAAACCTGGCCGGG
88800 29 96.6 33 ............................A GAGGCGTGTTTGCTCATAGGTAGGGCGGTTAAC
88862 29 100.0 32 ............................. ATTTATAGCGATGATCCGAATGCCTACGGGCT
88923 29 100.0 32 ............................. CTGGCCCACGAGTAGCAATATCCAGATCATCA
88984 29 100.0 32 ............................. GAGGTTATTCACCTTCGTGATTTCCTTAATGT
89045 29 96.6 32 ............................T TACCTGCGAGATCGTCGGCACTGGCAAAAATC
89106 29 100.0 32 ............................. CGATCTGCGGTTGCGGCGGAGCCGGCTCTATG
89167 29 100.0 32 ............................. TGATCCAACTGCTGGCCGCGTACATCAAAGAC
89228 29 100.0 32 ............................. TTATGAGTGAAACAAAATCATACGATTACTTG
89289 29 100.0 33 ............................. GGCTGGGAATCCGTCGGCCCGCGCGATATTGCC
89351 29 100.0 32 ............................. GCCAGAACTTAATCTGGCCTCATTTTAGTATT
89412 29 100.0 32 ............................. CCCTGGCATAACGGGAGCCAGGTCGTAATAAT
89473 29 100.0 32 ............................. ATGCAGCTTGGGAGTTAGCACCAGAATGCCTA
89534 29 100.0 32 ............................. GATGTTTTCACATCTGTTGATATGGTTTTCCA
89595 29 100.0 32 ............................. CCATTCCGGTAACTCTGCTGTCATCGGGTCGA
89656 29 100.0 32 ............................. CAGTGTTAAACCAGTCCCGTAATTGCTGATTT
89717 29 100.0 32 ............................. CCGGCATTCAGCGTAAAATCGCGGTCGGTGAT
89778 29 100.0 32 ............................. CCAGTCGACATAATCTCCATCACTGTTTTTCA
89839 29 100.0 32 ............................. GCCAAAGATGCCGAGGGCATGAAACGTAAAGA
89900 29 96.6 0 ....................A........ |
========== ====== ====== ====== ============================= ================================= ==================
24 29 99.6 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG
# Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACGACGCCGGTCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGATGATGATGCTGATACTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTACGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGTGTAGTGGATGTATGTTATTGTTTTAAAATAAGAACCTGGTGGTTTGGCTTTATTGTAATGAATGATTTTTTTATTTCATAAATTTCAAATGGTTATATAGTCTTCCGGATAATTAAATCGCGGTGAAATTTTGTAATGTTTAAAAGTATATTTAATTCAATTAGATATATTGAGA
# Right flank : GCATGTTCGCGATTTCTGGTTGCGGGGAATGGCGAAAGGTTCGTTCGGAACGGCGTGCATTGCCGCAAACAATGGGAATGCCGGAGTACCCGGATTGTCAGGTGCCACGGGATCTCACCCGAGAGGGGGGCTGCGCGGGCTTGAGAAGCCCTGCATCAGTACATCTATGAAGTGGGGGCTTGAGGATTATTAAAGATATGGTATTGTGTAATAACCGTGATAATCAGCAGGAAGTCAATCCATGAACGTCGTTCACGACCATCCAGGGGTCTCTACTCTTGTTGGAACCCCAAAAGAAATACAGGACAAGCTCCGGAAGTCGCATGCCGACAAGGTGATGGTGCTCACTTTCGAGCACATGAATGCCCATGTGCTGAAGACCTTGGCCGAGAACATGTCAAACGTTGCCTCGTCGATGTTCGAAGTGCTGCTGACACGGCAGGATCGCGAAGTCGTAGAGCTTCTGGCTGACGCGCTCGTTCCGCGAAAGCCGGCTTCAC
# Questionable array : NO Score: 6.24
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [78.3-45.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 103006-104378 **** Predicted by CRISPRDetect 2.4 ***
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
103006 29 100.0 32 ............................. TAATCAAAAATCCCTCCTTTCAGCGCCTGATG
103067 29 100.0 32 ............................. CGCAATGTCACTTTCCCCCGCGCAGCGCCACA
103128 29 100.0 32 ............................. TCGCCGCCGCTCTTCTTGTCCTTGCCGGTCAG
103189 29 100.0 32 ............................. GGTTCGATCGCTGGTCGGACGCCGATAGGATG
103250 29 100.0 32 ............................. TAGATGGAGGGTTGGGGGCGTTATTTACGTTG
103311 29 100.0 32 ............................. ATGTACCATCGGAAACATAACTGTATGTAATT
103372 29 100.0 32 ............................. TCGGGCGCATATCGCGCACCCAGTCATCACAT
103433 29 100.0 32 ............................. AAATATCAAGACCGTTCCCCGTATTATATGCA
103494 29 100.0 32 ............................. CATAATGCAATAAAAACGTGTTTGCAACGATT
103555 29 96.6 32 ............T................ CAACGAATGCCACTATCACGGGAGAATTGAGC
103616 29 96.6 32 ............T................ TTTGGCCGCTGGCAGTGGTTCATTCTGTCGGT
103677 29 100.0 32 ............................. TTATGCCCCTCTCATACTTATGTTATTTTCAG
103738 29 100.0 32 ............................. GCGTATGCACCAACGCCAAGGAGCGAAGGGGC
103799 29 100.0 32 ............................. TCAGCGCGTACGCCGTAATAGCCCTCCTGATC
103860 29 100.0 33 ............................. TAAGCCGGGTTAATGCGGATGCCGTGGCGTTGC
103922 29 100.0 32 ............................. CCGATCGTCTGTCATTCCTGCCGTATCTGTTC
103983 29 100.0 32 ............................. CACTAATTAAGATACCACTCCACGAAAACCTT
104044 29 100.0 32 ............................. TCCTGGCCGAAGAGTTCAGCGCCGCCAAGGCA
104105 29 96.6 32 ............T................ GTCGTAGACAAATACCGGCGTCTGATCGTCCT
104166 29 100.0 32 ............................. GTGCGCGACCGTCGGCGCTTCCGCTTCAGCCC
104227 29 96.6 32 ................T............ GGTAACTGGGCCATCATTTGGGCGCTGTTCAT
104288 29 96.6 32 .............T............... CCTAAAAAGAGAACGGGGTGACGCCATGATGA
104349 29 79.3 0 ...............A....C....TGAC | T [104366]
========== ====== ====== ====== ============================= ================================= ==================
23 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TTGATTGAGGAGGTTCTGGCCGCGGGGGGAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGCCACAGGAGTCGGAACTGATGGGAATGCTGGTTGTCGTGACGGAAAACATTCCTCCACGGCTGCGAGGCCGGTTGGCTGTGTGGCTATTGGAGGTGCGGGCCGGGGTCTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACCGCCTTAGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGGCGTGAACCGGTAGATCTCGATGGGCTAAGGTTGGTCTCTTTCCTCCCTATTGAAAATCAGTAAGTTATCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGAGTCTTAAAAAGTTCTATTATAACAAGCAGTTATGCCTAGA
# Right flank : CTTTTAGTGAACGGTATGTCAGAACAATCACTCATCAGTGGCTAAATACCGGCAGTACTTAAAAATAAAACGCTCTCATATCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGCTCGTTGGCGCGGAAGGCGTCGATCTGTGCCAGCGTCTCGGCGCCCTGCGGCGACAGTCGCAGGATGTCCACCAGCCCCTGCATGCTTGGCAGCTCGTTGCCGAGGTTGTAGCAGTAACCGCTCATGGTCTGGATGCCGTTGAGTACGAACACCTGCTGCTGTTCCTGGGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTC
# Questionable array : NO Score: 6.18
# Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 3 107782-109582 **** Predicted by CRISPRDetect 2.4 ***
>NZ_LFJS01000001.1 Serratia marcescens strain AH0650_Sm1 scf3, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
107782 29 100.0 32 ............................. CCTGCCCCTGAACGTCATTCATTAACCAGGAT
107843 29 100.0 32 ............................. AGATTGACATCGGAATCGGCCAGCCTCGAATG
107904 29 100.0 32 ............................. GTTTTGAGGTCGCTTATTCGCCTAGCATTGCT
107965 29 100.0 32 ............................. ACGGGCTATATTTGCTAACAGGCATCGCGCGC
108026 29 100.0 32 ............................. ATATCTCCGGGTTGAAACGCGACTATGCCGGC
108087 29 100.0 32 ............................. AAAAGCTGGGACAACCAAGCAGGACTCCTGCG
108148 29 100.0 32 ............................. TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA
108209 29 100.0 32 ............................. TTCACCGAGCTGTTCGAGGACAACATGATCGA
108270 29 100.0 33 ............................. CCATCAGCGAAACCACCGGGTTCCGCCCAACGC
108332 29 100.0 32 ............................. TTCTCAGAGCTATCATTTTCAGCCGGCAAGTA
108393 29 100.0 32 ............................. CCCTGCACCACTGTCATTGCTGTCCAGCGGCA
108454 29 100.0 32 ............................. CCATGAGCAAGACCGGACGCAATGGTTTCACC
108515 29 100.0 32 ............................. CACGCTCAACGGGCTGGCCGATGGCACGCTAA
108576 29 100.0 32 ............................. CCGATCACCTGGACTACTCAGTGCTGGAAGAA
108637 29 100.0 33 ............................. CGTAAAGCGCATAACTACCATGCTGTATCCGCC
108699 29 100.0 32 ............................. GCCTGGTAGTTCATGCGGCCATCTCTCGTGGT
108760 29 100.0 32 ............................. GCGATCGGCAACGAGTGGAATTATCTGCAGGG
108821 29 100.0 33 ............................. CGTTGCCGCCCGGAGTTGCGCCAGTGTTTTGGC
108883 29 100.0 32 ............................. CAGATGCGCATGACCAAATCCTTCCAGGAAGT
108944 29 100.0 32 ............................. TCTGCTTATCAGCCTACACTTGATATATTAAG
109005 29 100.0 32 ............................. GTCACGGATAACAGCCGTCATGTCGGTGTTGT
109066 29 96.6 32 ...........A................. CGCACCTGGACGCTATCGCCAAGCTCAATGTC
109127 29 100.0 32 ............................. TTCCTGCGCCATCTGTTCTTCTTCTGGCTCCA
109188 29 100.0 32 ............................. ATACGCGCCGAGGCATTATTTTGCACTTTGGG
109249 29 100.0 32 ............................. GTGGAAATTTACCTGGTGATCCGTACCTACGA
109310 29 100.0 32 ............................. TATGTTTCCGCAATTTATCAGCGCCTATTTGC
109371 29 100.0 32 ............................. AAATGGAGCATCACGGTCGGCCTGGTGCTCAC
109432 29 96.6 32 .............C............... CCGATAATGATGCGGTCGAGCGCCTGACGTTT
109493 29 89.7 32 ............TC.....A......... CAGCACGTCACCCGACGAGCTGGAGCAGGCGC
109554 29 69.0 0 ........T.T.TA.A......GG...AA |
========== ====== ====== ====== ============================= ================================= ==================
30 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG
# Left flank : TACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCCTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTCTAACTTGTTGATAATTAGTTTTAATTTGGTGGGAAAGGATTTCACCAAAGTGCTTTTTAAAATTTACTTATAAATCAAATGGTTGTATTTTCACGTAAGACGAGAATATTTGGTGGAATTTGAGGTCTTTAAAAATTCATTTTAATTCAACCATATATTCTAAG
# Right flank : ATTGAGTGCTCGCAATCACATAGGCAGCATTTGAAATGCAGGGGGAAAAATCACGTAATGAAACCTATTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGTTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGGTGCTGTGCCAGTCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCTTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATACCGTACAGCG
# Questionable array : NO Score: 6.18
# Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.55,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//