Array 1 43531-45827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMP01000003.1 Halobacterium hubeiense strain JI20-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================== ================== 43531 30 100.0 34 .............................. CCCACGCTGCGTAATCTCAACGCCCTCCACGTCC 43595 30 100.0 36 .............................. TCCAACCCCTTATGATGATGGCAGTAATCGTGCTCG 43661 30 100.0 35 .............................. CTCACGAGCGAGCTCGGGTTCGAGGACATGCCCGA 43726 30 100.0 37 .............................. GCTTACTTGCGGGTTCATACTGCATTACACCCTTCGG 43793 30 100.0 37 .............................. ATCCGGATGCAGCTCGCCATCGAGGAAGCGCTGTTCG 43860 30 100.0 36 .............................. ACAGTCCGCCGCCCGAACCGCCGCTTGCCGAGCCCG 43926 30 100.0 35 .............................. ACCCGGAGAACAAATCAGCCAATCACTCCAAGTAG 43991 30 100.0 36 .............................. CTTGAATGTCGAAACTGATAGTGTAGCGTTGTAGGT 44057 30 100.0 35 .............................. CCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGA 44122 30 100.0 35 .............................. GAGAACTATACATCGACAGGGGGATGTCCTCGGCG 44187 30 100.0 37 .............................. ACGACGCAACCGTCGATTACGCGCCCGAGACCACCGA 44254 30 100.0 63 .............................. NNNNNNNNNNCTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTC 44347 30 96.7 37 .........................A.... GTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGG 44414 30 100.0 36 .............................. TGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGG 44480 30 100.0 36 .............................. CCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACA 44546 30 100.0 36 .............................. GGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGT 44612 30 100.0 33 .............................. ACCGAGGCGCACCACGGGACGGCGCGCATCCTG 44675 30 100.0 42 .............................. GGCGGTGAGGTACTGCACGTACGTCCANNNNNNNNNNGCCGC 44747 30 100.0 36 .............................. CAGATCAAGGAGATGCACGCCGGTGTGCTCGTCACC 44813 30 100.0 35 .............................. AGAACCTCCAGCGCGAGGATGATACCCCCGCCAGC 44878 30 100.0 38 .............................. CCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACGGC 44946 30 93.3 36 .......T.....................T GGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 45012 30 96.7 35 .............................T GATTGGCTCGTCCAGGGTCGGCCGCTCGGAGGTGC 45077 30 100.0 37 .............................. ACGCAAGCACTCTCGCTGGTGTCTGTCATGGTGTCGC 45144 30 100.0 37 .............................. GTCGCCACGGCGCCGTCGCCGTCCGGGTCGGTGAAGC 45211 30 100.0 35 .............................. AACGAGGACCTCGTCGACTGGAGCGTCGAGAAGGA 45276 30 93.3 35 .......T.....................G GAAACGGGCGTAACGGAGCAGAACCTCGACAGCAG 45341 30 100.0 36 .............................. TCGACGACAACGACTAATACCGAGTCTAAAACACTG 45407 30 96.7 33 .......T...................... GGCACCTGGCTCGCCATGGAGTGGACGGGCCGC 45470 30 93.3 35 .......T..................G... CTGAACACCAAGCAGGACCCCGTCGGTGACGTCCT 45535 30 96.7 37 .......T...................... TCCCGCCGCAGGCGTTTACGAGCGCTATCACCTCCGA 45602 30 96.7 35 .......T...................... TGCCCGTACGGCGTGAGCTCTGCTGTCCCAGATGC 45667 30 93.3 35 .......T....T................. AGCACCCACTCCGGCGTCTCCCCGCCGTCGACGGT 45732 30 93.3 36 .......T.................A.... GGGGCGTATCTATCGTGACTGACCCATAGCCCGCAC 45798 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================================== ================== 35 30 98.6 37 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGCGGTACTCGCCGGACTACGCGAGTTCTGCGACAGCATGAGACGCTATGTGTCTTCGTATTCTTCGAGTGTGACTTGGGAGGCGTCGAGGCCGGCTTTCCGGGGGTCTTGCGAGGAGAACTTCCTCGCTAGCGAAATCCGGGCTTCGTAGCTGAGGACTGCAATTGTGGGGATGGAGAACGCGAGAAGTGGGGTGATCTGTGTTTGGAGAATTAACTCGCCAGCAGCGTATGCGAAGAATGAGTCTGCGACAGACAGCCGCCTGTCAGGCGCGGCACCGACACGAGCGCAAACGAACTCTCCGCAAGACGTACGAGTGATTAGCCACGGAACAGCCTCGTCCCGCTGGCCACACTGACTCGGGAGATCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGGTTCAGGGACTATTGCGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CGACGCGTCCCGTTGGAACGTCGCCGCGTCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACGCCCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAAGCCGAGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGAAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGTGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACCGCATCAGGCTTGTCGGGTCCCTCGTCGCTGACTTCGAAGACGTGGTGGACTTCCAGGTACGGGTCGCCGGTGCGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 51118-52012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMP01000003.1 Halobacterium hubeiense strain JI20-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 51118 30 100.0 35 .............................. TAAGTCGGGCGACACGGCGTCGACGCCTTCGGTAA 51183 30 100.0 37 .............................. ATCGACTGGTACGAGAACAACGCGTATCCCGACCGTG 51250 30 100.0 32 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTG 51312 30 100.0 36 .............................. GATGCATCGCCAGCAGACATTATCTCCGTCGGAGAC 51378 30 100.0 34 .............................. CCGCGCTCGGCCTGAATGCCGGAGATGCCGCGGG 51442 30 100.0 34 .............................. TACGACGACCTCGCAGTCTCCGACACCTATACCG 51506 30 100.0 34 .............................. CGTCTCGCCGTCGGTCAACAGTCCCGAGTGGCTG 51570 30 100.0 37 .............................. TCGAAGACGCATCCGGCGAGCGCGACCGCGACATGGA 51637 30 100.0 37 .............................. CGACGTCGCGCCGGCATCATGCCTCCGGCAGGTGCCA 51704 30 100.0 34 .............................. ACGAACAGCCCGGACACCGACGAACTCGCAGGCT 51768 30 100.0 35 .............................. CATCAGTCGCCGCCGTTGTCTGCGTCCTGCTCGAC 51833 30 100.0 35 .............................. CTCTCTTTGCCAGAAGCCACGCCGAAACTAATACA 51898 30 100.0 55 .............................. CGCAGTAAACCCGACCCCGAACACCCATGGCGGTACGTCTGCAAGGAGTGCCATA 51983 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================= ================== 14 30 100.0 37 GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Left flank : CTACCACGGCCTCGACGCGAAGTTCGAGCGACAGCAGCCGAAGTCGATCCGAACCCGTTCGCCAGTTTGCGCTCGCCGACGCCGACGGCGTCTATCAGGGCTGCGGTGAGAAGGCGCCGTTCGAGACTCCAGCCGGTCGCCCATATCTGGAAGTCCATCACCTCTACCGGCTGAGTGATGGCGGTTTCGACGACCCTGAGAACGTCATCGCGCTATGTCCGAACTGCCACCGCCGCCGTCACGAGGCAAGAACGACGACGAGTTCAACCAGGAACTTATCGAGAAGGGCGAAGAGCGGAACCGCCGAATTCTGTCCGAGTGATTAGCCGTGGAACCCCATCGTACCGCCGCCTACACAGACTAGGGAAATCGGATTTCCAGCAACGCCGGTACTCGCCGTTCTTCATCGACCCCTAGGGGTTCAGGGAGTATTGCGGGTCGACGAAAACACCGAAGTGTGTATGGCTTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CTCTCGACCGAACGCCCACCCGCACGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGAGTTCCAGCGGCAGCACGAGCGAGCGCGTCGTTACAGTAGAACGCTAGTGGGTTGAAGGGAATGGGTGAACTACACAATCGCCACCGAGCACACGTTACAGCAGAACGCTAGTACGGTTGAAGGTCCAAGATCTCCGGTGGGTTCCGGTCAACGAGACGGTTACAGCAGAACGCTAGTGCGATTGAAGGATTTCCCAGCGGACGCCCAATAATACAACCGCCACCCAGAAAGCCCGCTACTATCGTCAGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 3 78404-78108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMP01000003.1 Halobacterium hubeiense strain JI20-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78403 30 100.0 35 .............................. CGCGACTACTACAAGGAGGAAGTCCTGAAATTCGC 78338 30 100.0 38 .............................. GTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 78270 30 100.0 37 .............................. CAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 78203 30 100.0 36 .............................. CCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 78137 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 37 GTTACATCAGAACGCTAGTGCGGTTGAAGC # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : GCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGCTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 89171-97519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMP01000003.1 Halobacterium hubeiense strain JI20-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 89171 30 100.0 37 .............................. AGACTGACGAAGTCCAGTGGGGGAGCGAGACCGGCGG 89238 30 100.0 34 .............................. TCCCGCGGGACGCCAGCCCGGTCGGCGACCCCCT 89302 30 100.0 34 .............................. AGCGAGCAGGTCCCTGCGGACAAGGTCCGCTGGT 89366 30 100.0 37 .............................. CGTGTCAATCAAGGTTTGTGGGCCGCCCGCCGGCCCC 89433 30 100.0 36 .............................. CTTGAGTCGGAGGGTGAGGAGTTTGAGACGGTGACG 89499 30 100.0 35 .............................. TCGTGCGGTTGGTCGCCGCCCGAACTCGTCGTCTC 89564 30 100.0 36 .............................. TTGGCCCGTGCGTGTACGGGGTCGGGGAGTTTCACG 89630 30 100.0 37 .............................. GGCACGAGTGATATTGATGCGATTGCTGACGACCTTG 89697 30 100.0 37 .............................. GTACAGGAACGACTCGGTGAGGATTTCAATACCGCGC 89764 30 100.0 36 .............................. ATCGACATCGGCTCGAAGGATACGTCGCCGCCGCGG 89830 30 100.0 36 .............................. CATCGGTCGGGTTGTCTGCGCCACGCCCCGGCCCGA 89896 30 100.0 34 .............................. TTCTTTCGCCACTTCGAGGAGGTAGTTCGCGATA 89960 30 100.0 35 .............................. CCACACTCACACACCCACGGGCCACTACTGCCGTA 90025 30 100.0 37 .............................. GGCGAATGGTCCTGTATCAATCCCCACACCATGATAC 90092 30 100.0 39 .............................. TCCTCAAGAGCGATACGGTCGCCAGCGAACCGGTATGGC 90161 30 100.0 35 .............................. CACAAGCGCCGCCGTGACACTCAGAACGAGCACGT 90226 30 100.0 34 .............................. CTCGCTGATGCGGTGGAAGGAACTCTGGCCGGCG 90290 30 100.0 37 .............................. GAGCCGGGGAACTCCGAGACCCTCGCGGAGTTGATGG 90357 30 100.0 36 .............................. AGGACGTACTGACGACGAACCTGCGCACCGTCGAGG 90423 30 100.0 35 .............................. GTCGTGGTTGCGGACCTCATCGGCGCTGATGTCGA 90488 30 100.0 35 .............................. GACTGGTCCGTGAATCAGAACGGCGTCCGCTCCCG 90553 30 100.0 34 .............................. CCGGACAGAGAGCACTCCCCACCGAGGCTCAACA 90617 30 100.0 36 .............................. GGTCCTCGTCGAAGAACACCGCGAACACGGTCACGT 90683 30 100.0 36 .............................. ATCTCGCGGCGGAGATAGCCGACCGACGCGAAGATG 90749 30 100.0 35 .............................. GTCGAGGTCCGTCTCGGTCGCCGCGACGACGGCGC 90814 30 100.0 35 .............................. ATGGTGTGAGGAGAACGGCGGCTATCATCCGATGG 90879 30 100.0 33 .............................. CAGTACCGCGGCAGCGTTGAGATGAATGGCGGG 90942 30 100.0 34 .............................. GCGGCCGCCGCACCGAACTCAAGCACGGCGCCCG 91006 30 100.0 36 .............................. AACATTCGGCTGCCGAACGCTCGCGAGCTCGCCCGC 91072 30 100.0 35 .............................. GGCTGGTGGCAGCGCAGCGGCGAAATCGACCAGAA 91137 30 100.0 36 .............................. GATCTGCCACATCGACGAGGCCTGGGTCGACTGGGA 91203 30 100.0 36 .............................. ACGAGACCATCGAGGTCCAGTCGACTCCAGATACCG 91269 30 100.0 37 .............................. TCAATCACGAGCTCGTCGTCGAGACCGACGCCCTCCG 91336 30 100.0 35 .............................. GAACTACTTGGCGCGAGTGAGGTGGACCGATGAGT 91401 30 100.0 37 .............................. TCTGCCTGCTCCCGCCAGTCAGTATATTCATGCGGCT 91468 30 100.0 33 .............................. CGCTAGGTTCTGCTCGTACCTAGTCCCCGGCAT 91531 30 100.0 36 .............................. GGCGGCCGCCGAACTGGTAGTCGGGCGCGCTCGGTT 91597 30 100.0 35 .............................. CGCGTCCACGGACAGCTCTTGGTCGTCGTCGTAAT 91662 30 100.0 34 .............................. GAGTGCGTCGCGGATGGCGTCCACGTGACTGCGG 91726 30 100.0 34 .............................. CACTCAAGCAGGCGGCCGACGCCACCATGCTTCG 91790 30 100.0 36 .............................. CGTCCGCCGGACGGCTGGCGCATCAAAGACGTCTGC 91856 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 91921 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 91987 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 92052 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 92118 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 92184 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 92251 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 92316 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 92380 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 92444 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 92507 30 100.0 36 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGTC 92573 30 100.0 38 .............................. TCGACGAGCTCGTGCTGGGTGGTCATCGTGAGTCGCTC 92641 30 100.0 35 .............................. GCCCTGGTAGCAGCGGTCAGCTACCCAGCCCGGCC 92706 30 100.0 35 .............................. AGGTTGTGGTTGAGGGGGAACTGCCTGAGGAGTCG 92771 30 100.0 35 .............................. AACGTCGCCTTACAGTCACGGCAAACTACGGTGCC 92836 30 100.0 36 .............................. ACGCTAAACTGCGAGCAGTGTGGCGGCCAAGTCCCC 92902 30 100.0 35 .............................. GAGGGTTGCGGTGTGGCCGTCGCAGTCGGTGACGC 92967 30 100.0 35 .............................. TCGCGGTCCCCCGACGCGACCCCCGACAGGAACGA 93032 30 100.0 38 .............................. AGCTGTGACATCGTCATCGATCGCGCGGGCGGGACCGA 93100 30 100.0 33 .............................. CCAGTCGCCTTCGCCGGAGCCGGTGACGACGGT 93163 30 100.0 37 .............................. TCCCGCAAGAGTCCGACGTCGCGAGCGGCATGACCGA 93230 30 100.0 37 .............................. CTGTTCCTCGCACTCGCGTCGCTGCTCGCGATGATGG 93297 30 100.0 36 .............................. CGCGAACATCGTCTCCGGGCAGGCCGACGAACCGGT 93363 30 100.0 36 .............................. GATAGCTCGCCGTCGACGAACGTCAGGTCATCCTGT 93429 30 100.0 34 .............................. GACCTGCGCAGCGCCGCCCGTATCTCCTGACGAG 93493 30 100.0 34 .............................. GCTGTCCGGAGTGCGGTACGGAGAACGGCTACGT 93557 30 100.0 37 .............................. GCGGTACCGACCCATCGTGAGGTACGGCGCGAGCGCG 93624 30 100.0 35 .............................. CAGTATGGCGAAGAAGACGACGCGCGACCAGCTCT 93689 30 100.0 34 .............................. TCGCGTACGTCTACTCACACGCCGGCATCCGCGA 93753 30 100.0 35 .............................. CTCGCGGTCCAGAAGGCTCAGGGTGACGTCCCCGA 93818 30 100.0 34 .............................. AGAAAGAGAGACGAGGGAGAGAGACGGTCTACGT 93882 30 100.0 35 .............................. GGTCGGCGTCGTCGACGACGTCGAGAGCGGGACCG 93947 30 100.0 36 .............................. GGGGTGAGGTCGCGGAGGTCGACGCGCTCAGTCACC 94013 30 100.0 39 .............................. GCGTGCAAGAACTTGAATGGGTGTTAGACGAATGACCGA 94082 30 100.0 36 .............................. CTGGGCGGCTACATCATTACGGACGGAGACATCGTC 94148 30 100.0 37 .............................. GGCGAGGGGCAGTGGACGATTAAGCCCGGGCTTCTCG 94215 30 100.0 35 .............................. GTCGTGAGTTCGTCCGTGGCGAGCGTCGTGCCGTT 94280 30 100.0 36 .............................. CTTGTACGCCTGGACGAGGGCGAGGTAGTCGCCGAG 94346 30 100.0 36 .............................. TGGCAGAGAGAGAAGAACTTACTAGCCGCTTCCTCG 94412 30 100.0 36 .............................. GACGTTCCCGGCGAGCCGGCGGCGGTCCCCGGCCGC 94478 30 100.0 36 .............................. GGAGACACGTCATACTCGTCGTTCGGGAGGAACGCC 94544 30 100.0 37 .............................. GGCTTGTTCGAGTCAGCACGGAGACGGCGCTTACTGG 94611 30 100.0 37 .............................. AACACGGACGCCGCGGGTAGTGGTTCGACGGGCTACC 94678 30 100.0 35 .............................. GGTACGCGTGTTCGTGCGCGGAGGCGGGGAGTGGG 94743 30 100.0 35 .............................. CCGCAGTGGGATGAGGACGTCGACGGCGTCACGCT 94808 30 100.0 36 .............................. AGACCGACGAAGTCCAGTGGGGCTCGGAGACCGGCG 94874 30 100.0 37 .............................. GCCGCAATCGTCGTATTTGACGCCGCCGAAGCCGGGT 94941 30 100.0 34 .............................. TGCCGTCACGCGCCCCGAGAGTGGCATTCTTAGA 95005 30 100.0 36 .............................. GTACCCCTTTGATGGGATTGTCGTGGAAGCCCCGGA 95071 30 100.0 34 .............................. TAGTCGTGCGTCGCCACCGTCGTTTACGTATAAG 95135 30 100.0 34 .............................. AAAGCCAGCGTGCTTCGGCGATGCAGGCCGCCGG 95199 30 100.0 37 .............................. AAGGGAGTCGTGGGGCAACGATTGACCCGGGAATGCG 95266 30 100.0 36 .............................. CCGAACGGCAGGGGGCCGGTGTGTCGCTCGTGTGAA 95332 30 100.0 35 .............................. CCCGCACGCAGGGCAGTCGTGGATGATTGAGTGCG 95397 30 100.0 37 .............................. CGCGACCCGCGCCCAGAGCTCGTCGTCGCTGGGGTCG 95464 30 100.0 36 .............................. TATCCAGTCGATGTGTTCGATGAATCGCGGGTCTAC 95530 30 100.0 37 .............................. GCGGAACTCACGGGTGAATCCCTATGAGTGGCGTTGA 95597 30 100.0 36 .............................. AGACCATCGGTTATGCAGCTCATGCTACAGATATGT 95663 30 100.0 35 .............................. CACCGGAAAGGGCGGATTCGTTGATGATGAGTGAT 95728 30 100.0 35 .............................. GGCGCAAGCCGTAAGGACGACGGTGAGACGAGTTT 95793 30 100.0 36 .............................. GGATCGCAGCCAGCCGCTGCACACGAATGGCATAGC 95859 30 100.0 34 .............................. ATGCGAGAGCACGCCGTCTCGGCCGTACCAGCGG 95923 30 100.0 35 .............................. CCGGGACGGTTGGCGTGATGAGCATCACGATTTTC 95988 30 100.0 33 .............................. CGCCGGAGGTCGTCGCGGTTCGCGTGAATGCGT 96051 30 100.0 35 .............................. AGGGAGAGGAGTCGCGGGCCGGCGTACGTGCGAGC 96116 30 100.0 36 .............................. TCGATTTCGACGGTCATCGTGCTGGAGAACTCTGCT 96182 30 100.0 35 .............................. GCTTAAGTTTACCGCATACGACCAACTAAAACCAA 96247 30 100.0 35 .............................. GGGAACATCACCGAAGTACGTCTTGTAGGGTTCGA 96312 30 100.0 40 .............................. GGGCACGCCCCCATCGACCTTCGGTCGTGCCGTGCCCGTC 96382 30 100.0 35 .............................. GACATGCCATTCGACCGGGTCTAACACGACGCTGT 96447 30 100.0 35 .............................. AGCGAATGGTACGACGGTGACGCGAAGCCGCTTCG 96512 30 100.0 36 .............................. GAATCGACGGGCGCTTCGGCGGTGGCGTTTCCGGGG 96578 30 100.0 32 .............................. ACAACCAAGAGCCAGAAGCCGACGAAGAGCAG 96640 30 100.0 35 .............................. CCCATGTCCAACGTGCGGAGCTACGAGTCGCTGGA 96705 30 100.0 37 .............................. TTGGAGGGTGTGCCACGCTGGAAGGTTACGGTCTGGG 96772 30 100.0 34 .............................. TCCCGTTGTCCGTGTCAACCTCCCGAGTAATCTC 96836 30 100.0 36 .............................. GAGAACGAAAACCGGGCGGTGATGACTGGCGTCGAC 96902 30 100.0 35 .............................. GTCGAAGAGGTCTTGCTGGTCGACCTCCGACTGGT 96967 30 100.0 35 .............................. TCGATTTGTGACCCGGCCTGTGGGAGCGGCCAGTT 97032 30 100.0 35 .............................. GCGTCGGCCAGCTCGCCGAGCGCGTCGATAGTCGT 97097 30 100.0 37 .............................. GACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAG 97164 30 100.0 36 .............................. GTCGACATTCGATGGTGAACCATCGGTCGGCGCCGG 97230 30 100.0 35 .............................. GCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCG 97295 30 100.0 35 .............................. GCGTCACCGACCGGGATTACATCACCAAGAACCCG 97360 30 100.0 36 .............................. GCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCA 97426 30 100.0 34 .............................. GTGGGGTCGGACTGGAACGCCCACCATCCGGTGC 97490 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 128 30 100.0 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : CAGCGACGGCGGTGACTGGATGACCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACTCGGCAAACAACGCCGATTATGACTATGACGTGTTTCAGACGTACCCTCGTGGGATTGAAGCGACTTTCTCGGGCGGATGGGGCTCGGGACCGGCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGCGTTTCAGACGTACCCTCGTGGGATTGAAGCGTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGCGTTTCAGACGTACTCTCGTGGGATTGAAGCTTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 97693-98377 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMP01000003.1 Halobacterium hubeiense strain JI20-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 97693 30 100.0 34 .............................. ACTCGGCAAACAACGCCGATTATGACTATGACGT 97757 30 100.0 34 .............................. GACTTTCTCGGGCGGATGGGGCTCGGGACCGGCG 97821 30 100.0 35 .............................. GCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGC 97886 30 100.0 36 .............................. GTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGC 97952 30 96.7 36 .............T................ TTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAG 98018 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 98083 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 98150 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 98217 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 98282 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 98348 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.4 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : CGTCGACATTCGATGGTGAACCATCGGTCGGCGCCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGTCACCGACCGGGATTACATCACCAAGAACCCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCAGTTTCAGACGTACCCTCGTGGGATTGAAGCGTGGGGTCGGACTGGAACGCCCACCATCCGGTGCGTTTCAGACGTACCCTCGTGGGATTGAAGCAGCGACGGCGGTGACTGGATGACCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGG # Right flank : CAGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //