Array 1 26-2479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000028.1 Haloferax volcanii strain SS0101 NODE_29_length_27921_cov_59.690914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 .............................. TGATTCGTGAGTGTCATGCGTCGATGTAGTAGGGTT 92 30 100.0 35 .............................. GAGTACGGCACGCTCATCGACAAGTCCCAGGGCGA 157 30 100.0 35 .............................. CGTTTCCTTACCAGCGGCTCCGCCGTGGGCGCGGC 222 30 100.0 37 .............................. GACTAATGGTGTACTACCGTGAGACCTCGGACGGCAA 289 30 100.0 35 .............................. GCCCACTTGCACATCCCATGCGTGAACATCAACAG 354 30 100.0 36 .............................. GGTTCGCTTGTCGATGCGTCGGAGGATGCGGACGGC 420 30 100.0 35 .............................. GTCCATCAGGTCCGCATCGAGGTCGACGCCGTGCA 485 30 100.0 35 .............................. TCAACCTCGTCCGAGTCGTTGCGGTGGTCCAGCTC 550 30 100.0 36 .............................. GTTCTTTGAGCTGTACGGGCGGCGTGCGACCATCTT 616 30 100.0 36 .............................. GACTCGCTCTACGAGATGACCGCGAGCATCAACAGT 682 30 100.0 36 .............................. TCGACATCCGAGTTTGTGTCGATAGTCACGACACCA 748 30 100.0 35 .............................. AACCTCTGCCGAGGACGGCGCAGGGAGTGGCCTCG 813 30 100.0 33 .............................. GCCCATAAGTCGGATGATTACGTCGGTGTACGT 876 30 100.0 33 .............................. GCCCATAAGTCGGATGATTACGTCGGTGTACGT 939 30 100.0 36 .............................. TATGTCAACTGCCACACGCCAAACCTATCCGTGCAA 1005 30 100.0 34 .............................. TACCTCGGGGAGAACGAGAACGGAACGCGGGCGC 1069 30 100.0 34 .............................. CGCGTCGGCGCGACGAACGGCATCGAAACCGAGT 1133 30 100.0 37 .............................. CAAGCGTCAGACATCCCCCAACTCGACGCCTCGACGG 1200 30 100.0 37 .............................. TGCTGCTCGCCCATCTCATGACCCGACGAGTCCCAGC 1267 30 100.0 36 .............................. GGCGCGAGCAAGGACGAGTATCTCGTGCTGGAGGTG 1333 30 100.0 36 .............................. GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG 1399 30 100.0 35 .............................. CCGTTGCCGAGAAGCGCAGCGACACGGTGCGCGGC 1464 30 100.0 36 .............................. TGAGTCGATTTTGCCGAGGTCGTTGGAGTCGGTCAC 1530 30 100.0 36 .............................. GAACCGTTGCGGACGGCGTTACATCCGCGACAGGGG 1596 30 100.0 38 .............................. GGCCGGTAGTCTGTACGGGGCACTGGCGAGCTTCGCGA 1664 30 100.0 37 .............................. TTAGTTGACTTACTGGCCGAACTGGTTGTTAACGGGA 1731 30 100.0 37 .............................. ACTGTGGGGAAGAAGCATGACTAAACGCAACAAAACT 1798 30 100.0 34 .............................. CACGTTGAGGTGTCTGCATCACGAATCTCCGCGG 1862 30 100.0 35 .............................. GACCAGCCGGCAGGGACGCTTTCGACGTGGACGCT 1927 30 100.0 33 .............................. AGCCGCTTGAGGACGAGCGCTCGCTCCCAGACA 1990 30 100.0 37 .............................. GGACTCATACGAGGGTCCGTACGTCGACGCCCTAGAG 2057 30 100.0 35 .............................. AGGCGACAGGCCCCGTTGGGTCAATCACAATCAAA 2122 30 100.0 37 .............................. ACTGAGGTCGCTTGCAAGTACCATTATTGGATGAGTT 2189 30 100.0 36 .............................. ATGGTTAGGCCACGTTGAGGGTGAAGTCTTCTTCGT 2255 30 100.0 34 .............................. CGTGGTCCTCGAGACGGAGGACTATCGGACGCTC 2319 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 2386 30 96.7 34 ...................G.......... GGCACCTACGACCGCCGCTACAACGACGACCCGC 2450 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 38 30 99.4 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : GTAGACTGCGACCTCGTCGTCGCCCG # Right flank : CGAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16173-17731 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000020.1 Haloferax volcanii strain SS0101 NODE_20_length_33623_cov_50.878337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 16173 30 100.0 36 .............................. GTGCCATTCTGACAGCCGCGTGCATCTTTGGTCCGA 16239 30 100.0 36 .............................. TAATACCTCCTCTAGCTCATCTGCGCAATGCCGCGG 16305 30 100.0 35 .............................. GACGGCTGGATTGCGGTCGCCGAGGGCGAGACGAC 16370 30 100.0 38 .............................. GAGTTTGACGGGTCGCCCGTCATCGACAACGGTCTCCT 16438 30 100.0 37 .............................. GCCACTTACATCTCCCCATGAAACGTCAATCGAATTT 16505 30 100.0 38 .............................. CTGATAGCGCCGCTCCTGAGAGACCAAATCGTGATAGG 16573 30 100.0 38 .............................. TCGACAAGCACACGCAGGATGTGCTCTTGGAACTTAGT 16641 30 100.0 36 .............................. ATCAACGTGTAGCAATGGTCCGCCGACGGTTCGCCG 16707 30 100.0 35 .............................. AACATGCGGGCAATCGCGGAGGAACTAGAAGAATG 16772 30 100.0 41 .............................. GCATCAGCGACCATCGTGGCGAACGCCGGTACGTCCTCTGC 16843 30 100.0 37 .............................. ACGGTTGCAACCCTCGCAACCCTCGCAACACATGAGC 16910 30 100.0 35 .............................. CTCGCTGAGCCGGGGCGTTCTATCGGCGGCATCGC 16975 30 100.0 37 .............................. GAGACCTCGGAGTACCAGAACCGGGCGCTCGATGCGT 17042 30 100.0 35 .............................. GAGCTCGGAGGCTGGCGTCGCCGCCGTCAGCTCCT 17107 30 100.0 35 .............................. TCGCTGAACGGTCGAAGACCTTTGAGCGTAGTTGC 17172 30 100.0 37 .............................. GATACATTTGCGCAGGAGGTCCCCGTCGACGTGGCGG 17239 30 100.0 37 .............................. GCCTTTGACGCGGCGGCCATCGCGATCTCCTCGTTGT 17306 30 96.7 35 ........A..................... ACTCTGAGCAATGCAAGCTTGTGTACCTAGCCGCC 17371 30 100.0 35 .............................. TCGAACCCGGCGACGACATCCCGGTGTCCGAACTC 17436 30 100.0 35 .............................. GACCTCGTGCCCGTGGACGCCGTCGACGACGAGGA 17501 30 100.0 35 .............................. CGCCGGCTCGACAACGGCGCGCCCGGCCGCTTCCG 17566 30 100.0 38 .............................. CTCATCACACGCGGCAAGTGCGTGGTCGATGGCGTCCA 17634 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 17702 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ========================================= ================== 24 30 98.9 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGATCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGTATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : AATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 107-731 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000391.1 Haloferax volcanii strain SS0101 NODE_538_length_781_cov_6.298898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 107 30 100.0 37 .............................. TGGTAGCGCACGCTCTCGTGCCATAGTTTTAACCTTT 174 30 100.0 35 .............................. CATCGCATCAGGCGACCACCGTCCCCCGAGGTCGT 239 30 100.0 39 .............................. CCGAGCCGTCGCTCCCGGAGACGTTCCCATCGCCGTCTA 308 30 100.0 35 .............................. TCTCGATCCTCGACGAACGACGAGTGGCGACGCCG 373 30 100.0 36 .............................. GCGAGATGTCGTAGCCGTTTTCGCTCGCGTACTGTC 439 30 100.0 36 .............................. GCTCATGTGTTGCGAGGGTTGCGAGGGTTGCAACCG 505 30 100.0 36 .............................. ATCGCTCCCCTCCTGCGAGGCCGCTGATAGCCTCGC 571 30 100.0 34 .............................. CGGCGACCACGCGACGCCCAAGAAGACGAACGCG 635 30 100.0 37 .............................. GACGTTCGAGGCGGTGTAGCCGATATGTCCATCGCGG 702 30 86.7 0 .........................CCT.A | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCGTCGGCGGCCCGTGTACGTCCATCCAGTATTCGATGCTCGGCGGCCTCCTGACCTTGTGGGGTTGAAGCCGAAGCCACGTGTGTTTTGGCGAACCGTCACCGTTG # Right flank : CAGACTCGAGTTCCGAGAGGTCCTTCTGGATGCTCCGGAGTTCGCTCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 72-630 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000412.1 Haloferax volcanii strain SS0101 NODE_587_length_655_cov_16.718333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 72 30 100.0 37 .............................. GCCAACCTGCATCTGTGGATGGGGATGTGGGTCTCGG 139 30 100.0 36 .............................. TACAACGCCATCTACGACGAGGTGACGCCGACCATC 205 30 100.0 37 .............................. GGTCAATACGACGCACAGGTCTATCAAACGCGCTGCG 272 30 100.0 37 .............................. CCAATCGGCGATGTCGTCATAGAGAATCACGTCGAAG 339 30 100.0 35 .............................. GACTCGTCGAGTTCGAGCTCGCCGTCGTCGTTGGC 404 30 100.0 35 .............................. CGTAGATGAAAACAACCAAAGTTAGCATGAGTACC 469 30 100.0 35 .............................. TTGGGAGCCATCACGTACACCTCTATCGGCTCATC 534 30 100.0 37 .............................. TTTATGCGCTATCGGTCATCCTCTGGGGGCAAATCGT 601 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AATTGAGGGTCGACGGAAACGTTGATGTGAATTCGCCACGTACAGTCGCCTACCCTCGTGAATTCGGGACGG # Right flank : CCTCTCGAGGGAGACGAGGAGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 72-2229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000053.1 Haloferax volcanii strain SS0101 NODE_57_length_19322_cov_105.638501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 72 30 100.0 35 .............................. ACCGTCACGTTCGCGCTTACCGGCACGGAGTTCCA 137 30 100.0 37 .............................. TTCACGTTCACGGGCGACGCGCTCCGCGGGGCCGGCC 204 30 100.0 34 .............................. TCAGCAGGGATTACTCGAAACCTCTGGGACGGCA 268 30 100.0 39 .............................. GACCAGACCGTCGAGTTCGACGACGCGATTAGCATCGGC 337 30 100.0 34 .............................. CTCTCGGGTGCGGCGGTCGAATCCGTCTCCATCA 401 30 100.0 35 .............................. TTGGAACACAATCCCCAACAGGACATCCCGAACAA 466 30 100.0 37 .............................. TCCTGTCGTTGGGGATGCTAGTCATGGCATCACAGGG 533 30 100.0 35 .............................. CTCGGCGTCGTCGCAATCGCCGCGGGGACCGAGTC 598 30 100.0 39 .............................. GTTGACCTAGGGTTGAGTCTCACACAGGAGTTCTTGCCC 667 30 100.0 37 .............................. GTCACCTCAAGGTACGGATAGTCGAGTCGGATGTTGT 734 30 100.0 35 .............................. GAGGGTCGCGTCCGCGACCGTCTCGAAAAGCGATT 799 30 100.0 36 .............................. TCGACGCAAACCGTGGCGTTCTCCGGCCGCACAGAG 865 30 100.0 37 .............................. GACTCAACGGGCAATCAGCAACAACTCTCGGCAAGCA 932 30 100.0 38 .............................. TCGAACACTTCGAAGCCGACGACCTCCTCGGTCGGGGT 1000 30 100.0 37 .............................. GACGACGCGGCGGTCTTGCTCGGCCGAGTCGAAGCCT 1067 30 100.0 36 .............................. GGCCTCGGTCACTCCGGACCGCTCCTCGTCGGGGTC 1133 30 100.0 39 .............................. ACCGAGTCGTCCGTCGACCCGCAGGCGTCGCACCGGCTC 1202 30 100.0 37 .............................. ACGCCGTGGATGGGGGATTACCCGTCACGTCGTGGGC 1269 30 100.0 37 .............................. GGATTCGAGGGGTGTCGCCTGATGTGTCGATAAATCG 1336 30 100.0 36 .............................. CTCAAACGCGCTCTCTAACCCGTCGATGTTTAGATT 1402 30 100.0 37 .............................. AGCCACTTCGGGGACTAACAAACCCATTTTGCGGTTA 1469 30 100.0 37 .............................. ACGAACGAACCAATGTACCGCGCAATCATGGTTGCGT 1536 30 100.0 34 .............................. ATGGTCCTTAATGACGACAGTAGTGGCGTTGGGG 1600 30 96.7 38 .........................A.... AGACAAAAGTATCAGGAGACCGAAGCGCGGCGACGCGT 1668 30 100.0 35 .............................. TCGTTTGGAGGAGACTCGGAAGACGAGCTCCTCGA 1733 30 100.0 39 .............................. GAACTCACGGGCACGAACTGGTACGACCTCATCTGTTTC 1802 30 100.0 37 .............................. ATCGACATCACGGATATCTCTCCGACCGACCCGTTTA 1869 30 100.0 34 .............................. GAGCGGTTTTGTCGGTCGTGTGGTGCTGATAGGT 1933 30 100.0 37 .............................. GCGTCACGTGGGGCACCGACGTGACGCCGGCCGCCTG 2000 30 100.0 36 .............................. CTCGTGGCGTACGGGAAGAACGTCCGGTCGTCACTG 2066 30 100.0 36 .............................. CCTCTCGAGGGAGACGAGGAGCGCCGCGAGGAGTGC 2132 30 93.3 36 ...A..................A....... GAGGACTGGTCTGAGAGCGACGGCTGGACTGGAGGC 2198 29 86.7 0 ............-...G.C...T....... | A,CA [2218,2220] ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.3 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AATTGAGGGTCGACGGAAACGTTGATGTGAATTCGCCACGTACAGTCGCCTACCCCCGTGAATTCGGGACGG # Right flank : CGCGTGGACTTAGTGTCGATTGTGCCGTTTGATACCCCTCCCCCGAACTATTACAATAATGGAGTTGAGATTGCACTTGTGCTTTCTCATCCGACCGAAAAACCCCAAAGCGGGCTGCGTTTTTCGTCTCTTTCCAGTGGTATCGAAACCGTGGTGATGGAAGTGATGCGATGAGAGTACTGATCGATTTGGAGGCAGAGATGGACGCGGCCTATGATACAGAGTATCACAGCGGACTCCGGAGGCGGATGTGGGACGCGCTTCGCGACACCCCGTACGATGAACATGGTACGGAAACGCCCGGGTTCTCGTTCTCCAACCCGTTCCCGTGGGGTGAGTTGGAGGAGGGCGACGAGCGCCAACTGCTGGTTGCCTCTTCCCGTGAGGAGCAGTTGGCACACATCGTCGCCGACCTGCTTGAGAACCCCGAGATACACGTGGGGTCGATGCCGTTCAGCGTGACTGACACGCGGGCACTCGATCCTGACGTCGGGCCGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 10218-10835 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000053.1 Haloferax volcanii strain SS0101 NODE_57_length_19322_cov_105.638501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10218 30 100.0 34 .............................. TGCTCGTCGTCCTGTCTCACGGCTGGGCGGTCTC 10282 30 100.0 36 .............................. GCCGTTCGTCGCTTATCAATGCCGTATCTGCCAAGT 10348 30 100.0 35 .............................. GCAATCGCGTCGTCGGCGTTCCTGCTCGGGACGCT 10413 30 100.0 34 .............................. TACGAGAATCCTGACGGATTTAACACGAACGTCG 10477 30 100.0 37 .............................. AACCAGATTCGGCAGAAGGCCGGCGTCAGCGACGACG 10544 30 100.0 36 .............................. GCTGGCTTCCGAACCGGCGAGGCGATTGGCGAGGTC 10610 30 100.0 36 .............................. GACCCAGAAAGGAACGTCGCAGTCGGGACGTGGCGG 10676 30 100.0 34 .............................. CGTACACACACCAAACGCTCGTGGTACTTCAGCA 10740 30 93.3 36 ...A........................A. TCAACGCCGTCTCAGACGGGTCCAGTCTCCAGATTA 10806 30 83.3 0 ..C.............C.....A...GT.. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.7 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GGGAGCCCAAGTCAACACCGACCCGGACGGGTGTGCAACGGAACTCGCGGTTGGAAACTCGCGGTACCTGCTGGTGGACGCCCAGAGTCGTTCCTACCATCCCGTGTTCGGCGTTCGATGAGCGACTTGCCTCAGGTCGTCACCAGTTGTGGTATCTGATTGCTCGTGAAATCTGGGTTTGAAAACGCTTGGGAGGAGATCTCAAATCGCGCCTCAGATAGTTTTAATGAATTGCGAAAGTTTCAAAATGATGACTTTCCCGATGACCCCCGGTACTGGGACCATCCGATTCGGGCAAGAATAGAAGAATTTTGTTACCGCTTATTGAACCCTGTACGAGATGATTAGACTATAATAGTTTGTCTATGATAGTCGATTCTCAGCAGGGGAAGAAGAGAAACTTCCGTCGACCCCCGGGGTTCCTAAGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCATCATGTACAGCCGCCCACATCCGGTAATTCGGATAG # Right flank : CTCAGAGAGGTCGCGCCGCTCGCCGTCAGAGATCTCTACGGACATCAGCAGCGAAACATGACCTCCTTGGAGCGATGCCATCGCATCCTCGACGTCGGACAGCCAGGAGCGACAGAGCCACAGCTTCACACGACGACGAAGCCCGCGAATCACCTTAGACAACTTCCGGATCTGCATCCTGTATAGGAGGCTGGCCAAAGAGACTAGCCTCTGTGTTGGCCATCTCAAGATGCCCAGCGATGTGTTCGAACGCCCTCTCAACTTCACAGGGTTCGTACAACTTTGAGCAGAGGTTACATCTCAGGTACCACTCGTCCTCAATCTCAACAGAAGTCCCAAGATGTGCGTAATCCTTGGATTGGAGATACTCGAAATCGTACTCTTCTCGCGTTGACTCATCGGACACAGCCAACAGGTTGGAAAGTGCCTGGCGGAGTCTCCCGACCGGACCACCAGAACTATTCACCGTGAGCACCCCCGTGTCTGAATTGAAAGACTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26-2413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMTR01000005.1 Haloferax volcanii strain SS0101 NODE_5_length_73486_cov_46.512924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 35 .............................. GAGTACGGCACGCTCATCGACAAGTCCCAGGGCGA 91 30 100.0 35 .............................. CGTTTCCTTACCAGCGGCTCCGCCGTGGGCGCGGC 156 30 100.0 37 .............................. GACTAATGGTGTACTACCGTGAGACCTCGGACGGCAA 223 30 100.0 35 .............................. GCCCACTTGCACATCCCATGCGTGAACATCAACAG 288 30 100.0 36 .............................. GGTTCGCTTGTCGATGCGTCGGAGGATGCGGACGGC 354 30 100.0 35 .............................. GTCCATCAGGTCCGCATCGAGGTCGACGCCGTGCA 419 30 100.0 35 .............................. TCAACCTCGTCCGAGTCGTTGCGGTGGTCCAGCTC 484 30 100.0 36 .............................. GTTCTTTGAGCTGTACGGGCGGCGTGCGACCATCTT 550 30 100.0 36 .............................. GACTCGCTCTACGAGATGACCGCGAGCATCAACAGT 616 30 100.0 36 .............................. TCGACATCCGAGTTTGTGTCGATAGTCACGACACCA 682 30 100.0 35 .............................. AACCTCTGCCGAGGACGGCGCAGGGAGTGGCCTCG 747 30 100.0 33 .............................. GCCCATAAGTCGGATGATTACGTCGGTGTACGT 810 30 100.0 33 .............................. GCCCATAAGTCGGATGATTACGTCGGTGTACGT 873 30 100.0 36 .............................. TATGTCAACTGCCACACGCCAAACCTATCCGTGCAA 939 30 100.0 34 .............................. TACCTCGGGGAGAACGAGAACGGAACGCGGGCGC 1003 30 100.0 34 .............................. CGCGTCGGCGCGACGAACGGCATCGAAACCGAGT 1067 30 100.0 37 .............................. CAAGCGTCAGACATCCCCCAACTCGACGCCTCGACGG 1134 30 100.0 37 .............................. TGCTGCTCGCCCATCTCATGACCCGACGAGTCCCAGC 1201 30 100.0 36 .............................. GGCGCGAGCAAGGACGAGTATCTCGTGCTGGAGGTG 1267 30 100.0 36 .............................. GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG 1333 30 100.0 35 .............................. CCGTTGCCGAGAAGCGCAGCGACACGGTGCGCGGC 1398 30 100.0 36 .............................. TGAGTCGATTTTGCCGAGGTCGTTGGAGTCGGTCAC 1464 30 100.0 36 .............................. GAACCGTTGCGGACGGCGTTACATCCGCGACAGGGG 1530 30 100.0 38 .............................. GGCCGGTAGTCTGTACGGGGCACTGGCGAGCTTCGCGA 1598 30 100.0 37 .............................. TTAGTTGACTTACTGGCCGAACTGGTTGTTAACGGGA 1665 30 100.0 37 .............................. ACTGTGGGGAAGAAGCATGACTAAACGCAACAAAACT 1732 30 100.0 34 .............................. CACGTTGAGGTGTCTGCATCACGAATCTCCGCGG 1796 30 100.0 35 .............................. GACCAGCCGGCAGGGACGCTTTCGACGTGGACGCT 1861 30 100.0 33 .............................. AGCCGCTTGAGGACGAGCGCTCGCTCCCAGACA 1924 30 100.0 37 .............................. GGACTCATACGAGGGTCCGTACGTCGACGCCCTAGAG 1991 30 100.0 35 .............................. AGGCGACAGGCCCCGTTGGGTCAATCACAATCAAA 2056 30 100.0 37 .............................. ACTGAGGTCGCTTGCAAGTACCATTATTGGATGAGTT 2123 30 100.0 36 .............................. ATGGTTAGGCCACGTTGAGGGTGAAGTCTTCTTCGT 2189 30 100.0 34 .............................. CGTGGTCCTCGAGACGGAGGACTATCGGACGCTC 2253 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 2320 30 96.7 34 ...................G.......... GGCACCTACGACCGCCGCTACAACGACGACCCGC 2384 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.4 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : GTAGACTGCGACCTCGTCGTCGCCCG # Right flank : CGAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //