Array 1 2462265-2465502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027786.1 Tetragenococcus koreensis strain KCTC 3924 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2462265 32 100.0 37 ................................ CGGTTTCAATTTGCGAATGATGGCAGTGGAAACTTTC 2462334 32 100.0 33 ................................ AAAACAAATTGGCCTTCTGACGTTTTGAAAAAG 2462399 32 100.0 34 ................................ TGGTAGCGAAATTTATACTGCGTTACGAGGTTAT 2462465 32 100.0 37 ................................ AGATATGCCCATGTTGAATTTAAAATATCCGCCGTGC 2462534 32 100.0 34 ................................ CTTTATTGAAGAATTTGTTCGTACACAAATTAAT 2462600 32 100.0 35 ................................ TAAAAAGTCCTTTATTGCTAAAACCATAATGACTT 2462667 32 100.0 35 ................................ TGGTAGCGAAATTTATACTGCGTTACGAGGTTATC 2462734 32 100.0 35 ................................ CCATTATCGCTAACAGTGAGCAGCAAGCCATGCGT 2462801 32 100.0 35 ................................ GATACGTTAAAAGCTCGAATTGATGCCGGAGAAAA 2462868 32 100.0 35 ................................ AAGGAAGTAGTAAGCACCCTATTCGGTTTATTTAC 2462935 32 100.0 36 ................................ GTTGGTTATTTATAATACCAATAGAAAAGGTCCGAA 2463003 32 100.0 34 ................................ TTTAATAATAGCAATTGGAAAAATTCTATAGCGC 2463069 32 100.0 36 ................................ CGCTTTGACGTAAAACAAGCCGACCAAAACGCTGGC 2463137 32 96.9 35 ...A............................ AGCACTTTTTTCTAAAGCTTTTAGTATATTTCCAT 2463204 32 100.0 35 ................................ CTTTGTTATCTGCCATGAGTGTTTCTCTCCTTTGT 2463271 32 100.0 35 ................................ TTTACTACTCTTTTTGTGATAAAGAGCGGTGGACG 2463338 32 100.0 35 ................................ AAGAGCTGTTCGTACTTTCGGGTCGCCCGAATCTT 2463405 32 100.0 34 ................................ TATTTAACGACTCTTTTGGCGAACCTGTCATTTG 2463471 32 100.0 35 ................................ TTATGCAGGGAAGAAAACAAGCTCTTTCAGATATA 2463538 32 100.0 36 ................................ AATTTATAAGTTAGCCCATGCTACACTCAAACAAAC 2463606 32 100.0 35 ................................ TGTTATATAAAAATAATACAAACCTAAACTACCAA 2463673 32 100.0 35 ................................ AAGATGTCGAGCCGAAAAATCCCGTAAAAGGCCAA 2463740 32 100.0 35 ................................ AAGATGTCGAGCCGAAAAATCCCGTAAAAGGCCAA 2463807 32 100.0 34 ................................ ACTAATAGATGACGAACTTTTTCTGCCTAATTTT 2463873 32 100.0 34 ................................ CGTGTTGTCGCTTAAGTCATTTACACTGTTGGAG 2463939 32 100.0 35 ................................ AAGATGTCGAGCCGAAAAATCCCGTAAAAGGCCAA 2464006 32 100.0 35 ................................ TTTACTACTCTTTTTGTGATAAAGAGCGGTGGACG 2464073 32 100.0 34 ................................ TGTCGAATTAATTGAATCTCATAAATCAAAAGCG 2464139 32 100.0 34 ................................ GATTCGGAAAAGGAAGCACAATTTTATATCCGAT 2464205 32 100.0 33 ................................ AGAAAACATAAACAATGGCTTCGGTGAAGACCA 2464270 32 100.0 35 ................................ AAGCCAGTCAGATGACGCCCAAACGTCTTTAAACT 2464337 32 100.0 35 ................................ TTGCACGCCATTGCCGTTTGCCCCTAAGACCAAAT 2464404 32 96.9 34 ...A............................ TTTATAACTATTGTAGATTAATTTTATATTCTTC 2464470 32 100.0 34 ................................ TTTTGCCATATTTAAACATCTCCTATATATTGTT 2464536 32 100.0 34 ................................ ACTCTTTACAATGACTAGTCGCCCCACAATAGGT 2464602 32 100.0 33 ................................ GCTATCCCTTTACGAACCTGGCAAGATTGGGAG 2464667 32 100.0 34 ................................ GAAAATGTTCGCTTGCAAGAAATAAAACCTTATA 2464733 32 100.0 36 ................................ AAATCGTATGTTTAAATAGTTTTCTCTTGGGTCAAT 2464801 32 100.0 34 ................................ TATGGTAGGCACAGGAATAATGGGAATTATTACT 2464867 32 100.0 35 ................................ AACATTTTCTGTGCCTTATTTTTTGCTTGATTCGA 2464934 32 100.0 35 ................................ ATCGGATGTATAAACCACATAAACTAATGGTAGAT 2465001 32 100.0 35 ................................ TAAAAAACTCTTGAAATAGGAGTCACGGTAAGGGG 2465068 32 100.0 36 ................................ TTAGCATCCTCATAAAACTGGAGCCAAGCTCGTGTT 2465136 32 100.0 35 ................................ ATCCAAGCGTCCTAACGCCATACCTTGCCGTTTGA 2465203 32 100.0 36 ................................ AAATCGTATGTTTAAATAGTTTTCTCTTGGGTCAAT 2465271 32 100.0 34 ................................ TATGGTAGGCACAGGAATAATGGGAATTATTACT 2465337 32 100.0 35 ................................ AACATTTTCTGTGCCTTATTTTTTGCTTGATTCGA 2465404 32 100.0 35 ................................ AATATCATTTACACGTTGTTGGATTTGTTCTTTAA 2465471 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ===================================== ================== 49 32 99.8 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : ATACGCATGAAACTGATAACCTTTTAAAAATCAAAGATAATTACAAAAAAATAATCATCACAGGTAGATATTATGAGGTAGAACAAGTAGAAGGTATACCAATTATTTATATTGTGGATTGGTTATTAGAAGAGTGATACCAAGGCAAATTGAAAGTAAAGAAACTTTTATCTTGCGTTCAGTATGGGCGGACCGTGGTAAGTATTTGCAATGACGGAAAAATTGAAGAAAGTTTGGTTTGGTTATTTCGATTTTATGCTTTATTTATTAGGAAAAAACTGGCAGAATAGAATTAGATAAATAGGAAATAATAATAATTATGTCTCTGAAGGAAATGATTTGTTATTATAATATGTAATTTGGCGCGAACCGAGGTCACACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAAATTACTCGCTTTTTCCGATTTATTAGGTGATTTTCTAAAATGAAAGTAGTACAAAGCCGCGTATTTTCCGC # Right flank : TAAACTAGATAATCCTAGTGACAGTAGGTCCAATATGGTCACTCTTTTCATAAAAGTAAATGTAAAATTTATTGAGGTTCCCTAACTAATGAATAAAAAAACCGTACTTTTTGTAACCAGATTGATGAGCGCTAACGACAAAGGTAGTTTCCTATGGATTCTATCAGAGTCTGGTGGGAAGAACCTTTTTATATTATAACATTACCAGATAATTCAAAATCATAGAATAAAGACAGACAGTAAAACGCCAATTGGTTCTCTGTTTAGTAGGGTGAGGTTTATGTTCCTGTTTTTTCGGATAAAGTTTTCCGATTCCTTTATCCATGATTGGATTCTCGTAGAAAGAATTCCTGATCTATTATCCATCTTTTTATTTTCGGATAAGGGAATGCCAAACTTTTATTCGTTATCAGCTATTTAAGAGCGTTTAACCGCTATTTTTCCTATTTTCGGATAAAGTTTTTCGATTCCTTTATCCATGATTGGATTCTCGTAGAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2474903-2475803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027786.1 Tetragenococcus koreensis strain KCTC 3924 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2474903 32 100.0 35 ................................ ATCCATTGATCTTTATGCTATGTCATCTGTGGGTT 2474970 32 100.0 34 ................................ GATCTCTTTCATCCGTTTATCTATCTCAGATTTT 2475036 32 100.0 36 ................................ GATAACACCTTTACTTGTGGGGTTAACCCACTTTCC 2475104 32 100.0 34 ................................ TCTGTCTTCCATCACGTTATTCAAAGCTCCTTGT 2475170 32 100.0 34 ................................ ACCAGTTCAGCGTGCTGTCCCTCAACCTTAAATT 2475236 32 100.0 35 ................................ ATAAATTTGTTGGCCATATTATGATTCATGTCTAT 2475303 32 100.0 36 ................................ GATATAGACAGTAAATGGAATCAGTGCGATTCTGCG 2475371 32 100.0 35 ................................ AGTTTCTGTGCTTTCAGGGATTTTATCTAAACCAC 2475438 32 100.0 35 ................................ CCGACGAAAGGGGATCAATAATGACACGAGCAGAA 2475505 32 100.0 36 ................................ TGTGTTTAAAATTTTGAAATTGGAATGTGTCACATC 2475573 32 100.0 35 ................................ CCTTTGAAATTGGGATCATTAGCTAAAATCGTTTC 2475640 32 100.0 34 ................................ ATTCCATTTGAAGATTAACGTTCCTGTAGGACTT 2475706 32 100.0 34 ................................ ACTCGTAAACCTGCATTGCGCAAGCCAATTTTAG 2475772 32 96.9 0 .....................A.......... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.8 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : CTATTCGAGACGATTTACCAAGTTATCCACCTTTTATGGCGTAAGGAGAGCAAGCCCATGATGATTTTAGTCACTTATGATGTAAATACAGAGACGAAACAAGGAAGAAAACGTCTGAGACATGTTGCAAACTTGTGTGTTGATTATGGACAACGAGTGCAAAATTCTGTTTTTGAATGTTCGGTTGTTCCAGCAGAATTTGTTGAATTAAAAGGAAAATTAGCTGATATTATTAATCCGGAGCTTGACAGTATTCGGTTTTATTTGTTAGGAAAGAATTGGCAAAATAGAGTAGAACAAATGGGAAATAATGATAGCTATGATCCGGATAAAGATGTTTTGCTATTATAATATATAGTTTTGCGCGAGCCGAGGTCGCACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAATTACTCATTTTTTCCGATTTATTAGGTGATTTTCTAAACCGAAAGTAGTACAAAGCCGTGTATTTTCCGCG # Right flank : TAACATATTGTATGATAATCAAATATGTGTTGTTTTAGACATTAGCGTTTAATTATCGAACTAATCAGTTTTTCTTAAAAATAAAACATAAGTGTAAAATTTATTAAGGTTCACTAACGGATGGACAAAAAACGCACTTTTGCAGCTAGTTTGACAGACACTAATGCCAGAGATAGTTATTTATGGGGTCCAACAAGCTTTAGCGGAAAGAAAAAAATTATGACTGAGGAGAAAATGAACGAAATGCTCTCTATTCTTGACTTATCAGGGATTGAATTGGGAATTTATTACCTACCTTTTCGAACATAGGAAACCAACTGGCAGCACATCAAACGAAGTTTTACTTCTCTTGTTATGATTTTGATCTATCTGGCACAAATGCGATAAAAATAAATCTCCTCTTTTGCGTCTATTGAACATTCCTAGTATAATAACTATGTTTTTGACAGGAATATTCAGAGGTTTAAACAGAACGTACGAGATAGGAGAATATACATAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //