Array 1 198115-199371 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDG01000003.1 Klebsiella pneumoniae strain EuSCAPE_LU013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 198115 28 89.3 33 ...........ATG.............. CACCTGGCATATGCACGGTTTTCAGGAATTTTA 198176 28 89.3 33 ...........ATG.............. CTTCTTCCCCATAGAGGTGATGTTAAGCATTCC 198237 28 89.3 33 ...........ATG.............. TAGCGTGATCAATAGCATTGTCCAGGTGGGCGT 198298 28 89.3 33 ...........ATG.............. TGCCTGAAAAGTTTCGCCCACGCGGTCTGGATC 198359 28 89.3 33 ...........ATG.............. CGAAACCCAGATACCGGTAAGCCAGATTCTGGC 198420 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198481 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198542 28 100.0 33 ............................ TGATTGAAAAGCTGGCTGTGAACAAACAACGCG 198603 28 100.0 33 ............................ CCCAAAAATTTTGCAGATGTGGAAAGACATTAA 198664 28 100.0 33 ............................ CAAATTCGTCCGGGTCAGCCAGGACCATCAGCG 198725 28 100.0 33 ............................ CGGAAAGCAGCGGTGAGAAGGCGCAACATGCAG 198786 28 100.0 33 ............................ CGGCTTTTATATCGGGCCACTTTTTAGTGGAGG 198847 28 100.0 33 ............................ TTTAGCGCCGTTGACGCACTGGAAGCCATTCAG 198908 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 198969 28 100.0 33 ............................ CTTGCCGCGCATCGGCAGTTATCCTGCCACCAC 199030 28 89.3 33 ..............T.......G.G... TCGCATTCCGCCTGTTTGTTAGCCTGAAATGGC G [199047] 199092 28 100.0 33 ............................ CGGAGTGCGCTCGCATACTCACCCTCGGCAGAT 199153 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA C [199162] 199215 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 199284 27 85.7 33 ......A...T.T....-.......... TTGTGAGGGGTCTACCAGCATTGGCGTACTGGA 199344 28 67.9 0 ........T..A..T......C.TAGCA | ========== ====== ====== ====== ============================ ========================================= ================== 21 28 94.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAAATGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCTGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAAAATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 181898-185157 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDG01000005.1 Klebsiella pneumoniae strain EuSCAPE_LU013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181898 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 181960 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 182021 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 182082 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 182143 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 182204 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 182265 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 182326 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 182387 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 182448 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 182509 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 182570 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 182631 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 182692 29 100.0 32 ............................. GTAACAGGTCAACTCTTTATCGCTAACGGCTC 182753 29 100.0 32 ............................. CTTTTCATTTTCTCATGACCGCCACCATTTCG 182814 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 182875 29 100.0 32 ............................. CGCACGGTGCATTCACGCCCGCGCGCCTGTTT 182936 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 182997 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 183058 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 183119 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 183180 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 183241 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 183302 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 183363 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 183424 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 183485 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 183546 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 183607 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 183668 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 183729 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 183790 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 183851 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 183912 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 183973 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 184034 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 184095 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 184156 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 184217 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 184278 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 184339 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 184400 29 96.6 32 .....A....................... GAATATAAAACCAGATTCCATATAGCCCTGTG 184461 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 184522 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 184583 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 184644 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 184705 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 184766 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 184827 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 184888 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 184949 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 185010 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 185071 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 185129 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //