Array 1 11374-15247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUW010000009.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21768 FAM21768-i1-1_scf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 11374 28 100.0 33 ............................ TTTACCAGCTTGGCTGCCAAATCGTTTGCCCAG 11435 28 100.0 33 ............................ CGGCATTTTGGAATTGAAAAATGATTACGTCTA 11496 28 100.0 33 ............................ TAATACCAGGGTTTTAGATGAGATTGTAGAGAA 11557 28 100.0 33 ............................ TGACCCAGTGAAAGTTGCGGTAGTGCCGTCTGG 11618 28 100.0 34 ............................ CTATCTCTAAATTCTATTCCTAAGTCGGTTAGGG 11680 28 100.0 33 ............................ TTATTGTCGCTTTGAGTGGTAACTCAACTAGCG 11741 28 100.0 33 ............................ TTGGCCACCTGTTGCAAAGTGGACATGACTGAG 11802 28 100.0 33 ............................ TCAGCGTGTAACTAGCGCCTACAATGCCCGGGC 11863 28 100.0 33 ............................ TCAGCGCATCGAGCTTGCGCTCTACGATCTTCA 11924 28 100.0 33 ............................ TGCTACTTGATCGGCAAGGATCTGTGGATCCCA 11985 28 100.0 33 ............................ CGAATTCATTCATCAAGTAGTTGTTTGATAGAA 12046 28 100.0 33 ............................ TAAGTTCTTGCAGGACCACATGGTGGTAGCCGA 12107 28 100.0 33 ............................ AACCTCATACTTGGTCAAGTCAGTCCGTTCATA 12168 28 100.0 33 ............................ CGCACTGAAAAAGCAACAGCAAGAGCAAGCCAA 12229 28 100.0 33 ............................ CAAATAACTATCTGATTCCTTGAGAGATTTAAG 12290 28 100.0 33 ............................ TCTTCAATCAAGCCTTCAGCATCGAATGAGTAG 12351 28 100.0 33 ............................ TGTAGTCACCGCTCCCGTCACTAGCAGTACCAT 12412 28 100.0 33 ............................ TCATTTTTTCGTCAATTCCAGTGATGCCCTTGG 12473 28 100.0 33 ............................ CTGGTTCTTGATCGGCAACCCGATTAGCGATTA 12534 28 100.0 33 ............................ AAGGTAGCATGCAACTAGAGGAATTGGAAGTTG 12595 28 100.0 33 ............................ TTTTCTCGTCTTTCTTAGCCAGTTCCCCAGTCA 12656 28 100.0 33 ............................ TGTAGTCGGCGTAAACGCTGAAGGTGTCGTGCA 12717 28 100.0 33 ............................ CTATAAGCTGTGCGCGCATCTTGACAGGCTTGA 12778 28 100.0 33 ............................ TGTTCATCGGCAAAGCCTTCAAGTCCATTACAA 12839 28 100.0 33 ............................ TTTAGTAATTGATGTGTCCAGCTACCAGCCAGA 12900 28 100.0 33 ............................ CTAACAGCTGTGCGCCGTTTGGTGGGATCACAA 12961 28 100.0 33 ............................ GCTTAGACCAGGTGGCCCAAAATTCCTTCTCTG 13022 28 100.0 33 ............................ CCATCGCTAGGATAGATGGCTGTGCCGCCGCCA 13083 28 100.0 33 ............................ TGGAAATTGGACTGATTCCGGAGTTTACCAATT 13144 28 100.0 33 ............................ TTGCGGCGGCTTGAGTTGGTTATTCGCGATTTG 13205 28 100.0 33 ............................ TTTTTTGTGCTTGATCCGGAACACAACTTTAAA 13266 28 100.0 33 ............................ TTCAAAGACCAGTGGGACAACGAATTGAATGAG 13327 28 100.0 33 ............................ TTTGGCAAGGTTTACGGCGATACATACGTTCAA 13388 28 100.0 33 ............................ TCAGCTGGAAGACCTGGGCGTTACAAATTGCCG 13449 28 100.0 33 ............................ TGTTCTTCATAATAGCTTTGTTCAAACCGATTA 13510 28 100.0 33 ............................ TATGTCCAACCCGTACCATTGCCACCTTTGCCG 13571 28 100.0 32 ............................ TTTCCATTTTGTGCTCCTTTTTATATAAAAAA 13631 28 100.0 33 ............................ CCATCGTAGTAGATGTCACTGAAGATGTCTGCA 13692 28 100.0 33 ............................ TAACATATTCCAAGAAATAGGGTTAAAACATCT 13753 28 100.0 33 ............................ TCTTGGCTCTCCATTTTCCGTTTCGCTTTTCGA 13814 28 100.0 33 ............................ CCAGCTTGAGCTTTTAAATAAACAGCTGGGAAC 13875 28 100.0 33 ............................ TTTGCTTGGTCAGCCCTTCGTTAAGCCGTGAGC 13936 28 100.0 33 ............................ TCGAACCGCTGCCACCTCCCGCTTGGCTTGCGT 13997 28 100.0 35 ............................ TAGATGGCATTAGCGTGATAATCGCCTGCCCGTGT 14060 28 100.0 34 ............................ TCATTTGTATATGTGTAAAGCGTGTTTTGTCCTA 14122 28 100.0 33 ............................ TACACGCAGGACCGGGGGGAAGCACTCAAAAAC 14183 28 100.0 33 ............................ TGTTGTTTGCAAGCGAATTTGTCTTGCTTTCAA 14244 28 96.4 33 ......................G..... CGGTATTTCCGTAACTCGCCATGTATACCTCCT 14305 28 100.0 33 ............................ TTTCTGTCAAAATTGCGCTTGCCCTTGAAGTTA 14366 28 100.0 33 ............................ TTTAATTGCTAGTGCTACCGACATGCAAGACTA 14427 28 100.0 33 ............................ TCATAGTGACGGCCAAAGACATAGCCGAAAACA 14488 28 100.0 33 ............................ TATAACGTATCGAGTAAGGCCAACTAGCCAAGT 14549 28 100.0 33 ............................ GTGAAATTAGGCGCTGGCCGCCTTTTGCCGTAA 14610 28 100.0 33 ............................ CATGATCAAATAAGCAGCAGCAGCAAACACTTA 14671 28 100.0 34 ............................ TATTTTCACGGAATTTTTTAGATGTAGTTTTTAA 14733 28 100.0 33 ............................ TCTTCATCACTGGCCATCAAGACCAGGGACTCA 14794 28 100.0 33 ............................ TAGGTGACCTGTTCGCCCTCGTGATTTTTGTAG 14855 28 100.0 33 ............................ CCCTTGCTGTCGTAATCCATAAAGTCACGGCGG 14916 28 100.0 33 ............................ TCAGTCCCGTGGCAATCAAGTCCAGTCCTACGA 14977 28 100.0 33 ............................ CGCCATGCACCTCGCCAACTCACAGCAAGCAGT 15038 28 100.0 33 ............................ CGTGATTATTGGTGAACGGTCAAACGGGAAAAC 15099 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 15160 28 85.7 31 ............T.T.......CA.... GTTCTTTATGCTATTGTGTTTTTCGTACTGT 15219 28 78.6 0 ...........AT.T.C....A.....A | T [15225] ========== ====== ====== ====== ============================ =================================== ================== 64 28 99.4 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGAGGTTTTGGGAGAACTAACTGACTTTGTTAGGGATGTGCCAATTGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : ATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAAATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAAGAGTATAGTGCAAAACACGGCCAAAAGCTATATGGGTACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGACGCCAGAGTCTGGATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTATCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCACGGCAATAAGCCTGGCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24323-26014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUW010000009.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21768 FAM21768-i1-1_scf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 24323 36 100.0 30 .................................... CGCTAGACTTTCTCTCTACAACGGCAGTAA 24389 36 100.0 30 .................................... TAAAGCAGGCAAAATCATTAAGTCAACAGT 24455 36 100.0 30 .................................... CACCGCAAGGCCGTTGAAGCCGTTAGGGTA 24521 36 100.0 30 .................................... TAGCAGCAATTGATGAACTGAACAGCTACT 24587 36 100.0 31 .................................... GAAGGCCGTTGTCGGCTTGCGAGTAGCCTTA 24654 36 100.0 30 .................................... AGAGCAATGCTACGGAACGGCCTTGTCATA 24720 36 100.0 30 .................................... TTCAGAGAAGGCTAGGAAATGGAGAGATCA 24786 36 100.0 30 .................................... TCAGAGCAAGAAGCAGAAAGACGAGTTTGA 24852 36 100.0 30 .................................... CCGTCAACTACAGGGGGATGATCTGGATTA 24918 36 100.0 30 .................................... CTGGTGGCCGAATGCTTCGTGCGGTAATTG 24984 36 100.0 30 .................................... TTAAGCCGGATTTGGCAATCGGGGATTTTG 25050 36 100.0 30 .................................... GGAGAACCTGGCGCTTGTTCAGCGGATCGC 25116 36 100.0 30 .................................... AAAAGAACGTATTGAATTGCGCAACTTGTC 25182 36 100.0 30 .................................... ATCGGTTACGACCTTAATGACGGTCTTAAT 25248 36 100.0 30 .................................... CGCATCCAAATTAACGACACCAATTTTTGA 25314 36 100.0 31 .................................... ACGAGCAGGCGTGGGGAGCTGCTGCAAGCTA 25381 36 100.0 30 .................................... CTAGAAGAGGCGTGGTAAGCCAAGCTAAGC 25447 36 100.0 30 .................................... CGCCGATGATGATACCGACGGCCATATCCA 25513 36 100.0 30 .................................... ATGGGCAACCGGCTTGGTCGCAAAAGCGAT 25579 36 100.0 30 .................................... TCAAAGTTGCCGGTAGCAAACAAGGTTTTC 25645 36 100.0 30 .................................... ACTGGTCATGTTCTGGTTGGCGATCCAGCC 25711 36 100.0 30 .................................... AATTGCAAAGAGCTTATGGCAACCGCTTAC 25777 36 100.0 30 .................................... GCAGTTGAGTTTCATCGACGACCCAAAGGC 25843 36 97.2 30 ....................T............... ACTGGTCTGGTTCAGAGTGACCGTTGCAGT 25909 36 91.7 33 .................................TAA AGCAGGCCTACGATCACATGCAATGGATGCCTA 25978 36 72.2 0 .........T....A........G..A...GTGGTT | A [26001] ========== ====== ====== ====== ==================================== ================================= ================== 26 36 98.5 30 GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Left flank : TATCAATATATGATGAAGGCTATAACCAACTTGATTCAGAAAAATACATCATGTATTTTGGTAACCCTCTTACTCAGATTAATCCTTTTGGATCGTTTGAAACTGACTTAAGAACATATATTGCCAAAAATTTGTGTCCTTATCAAATAGATGAGATAGAACAGAAGTGGGCAAAATTACAGGAGTCTCTCCAAAAGGTATTGTTTACGTTTAATTTTCCAACAACGATTAGACAAGAATTTGGTGTAAAAAATATTTTGAGAGATTTCCAAGTAGGTATTGATGGATACAAATGTGATTCAGCGTATGATAAAATAAGTTTGATGATACGATTAGGCCGAATGCTTCACCCAGAAAAGATCATGGTGTTTTGTGATTTAACTTCATATTTGAAAGCTTCAGAGCTTGAGCAGCTTGAAGAATTCTGTCGTAACGTGACAGCAAAGGTCATCTTAATCAATTGATATGCTATTGGTTCTACTAGATTATTAAAAAAGTCA # Right flank : TTTAAATTACGTATTGTTTGGCCCTCAACAGGGCCTTTTTTCTGTTGAACACAACAACTTAAAAAAACGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTACAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATCGCCTTAAACACCGGGATGCGGCAAGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGTTCCAGCCTCAAGGCGGCCCGCCTGGCTGAAGCTCAAATGTTAATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //