Array 1 78689-79516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQZ01000022.1 Haemophilus influenzae strain 841_HINF 232_223200_3566063_17+,66_,29+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78689 36 83.3 30 ..AA..A.AT.T........................ TCATCTCTAACCAAGTCCACGCTATACAGC 78755 36 100.0 30 .................................... TGATTGCCAACGAGCATTATATTGCTGGAA 78821 36 100.0 30 .................................... GGGGTGCGTGGCTAAGAGATACGGTATTGC 78887 36 100.0 30 .................................... ACGTGTTGCTCAGTATTGGTTGGAGGCTTG 78953 36 100.0 30 .................................... GCCCTTTCCCTTGAATTTCAGTACTTGCTT 79019 36 100.0 30 .................................... AACTTGTTTATGCTTACGCAATGTGGATTA 79085 36 100.0 30 .................................... AAAAATTATCGCTAACTGACTTGTCACAAA 79151 36 100.0 30 .................................... CGAGTGTATATGCTATCTCTGTGTTTTTGA 79217 36 100.0 30 .................................... CCGCTAAAGCTGCTTAATACGAGGACAACA 79283 36 100.0 30 .................................... AGAAGGTGCTGAAACTATTGAAGAATTAAC 79349 36 100.0 30 .................................... ATTCGCTGCTGTGACATCAGCAAATACAGC 79415 36 100.0 30 .................................... TTTCGCCATCTTTTAACGCATCTTCCAACT 79481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GCCTTACTATTGGTGAAGTGAACGGTGATGAATTCTGCGTGAATTTAATTCCTGAAACCTTACATAGAACTCTAATCGGCAAACGCCAAATTGGCGATTTAGTAAATATTGAAATTGATCCACAAACTCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACCATAAGGAGGAAATATGTTTAAAGATGAAGTTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATGTTTAATGTGTTTTTTCTATTTCCACTTTTAATGGTTTTTGTACTGATTGGCGTTATTAATGGTGTAATATGGAACGTACTTTTAGGTATTGCCTTTACTTGCCTCGTCTTTCTTATCTTATTTAGGATATTAATCCATTTTTTATATAAAAAATGGGAGAAAGAGCATCAGAAAAAAATGCAAGAAGAGAATGAAGTTAAATACATTATTATTAAATAGTAAACTTATACTGTATT # Right flank : TAGGGACGGCAAAAAGCCCCATGCCGTAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCAGTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGATCCCTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCATCTCGCCCTTTAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGATAACCATCTTTAAGTAAAAATTGACGGAATTGGTTTGCTGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCAAATAAAACGATCATACGCATAAAGACTTCCTCACTCATATTGGTATTCCTGTAGTGCATCGATCTCTGGTAACTGCAATAATGTTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 151618-152450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQZ01000012.1 Haemophilus influenzae strain 841_HINF 106_212493_3337898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 151618 32 100.0 37 ................................ TTGTTTTAAATTACGCCCAGCTGTACCGGAACGTGCT 151687 32 100.0 34 ................................ TTTAAGTTTGAATTGGAAAAAGCCAAAGAAAAAC 151753 32 100.0 35 ................................ TTTAAACGCAAGGTGCAACATATTTTCCGCCGGCA 151820 32 100.0 33 ................................ TTAAAATGTTTGGTATCAATTTTAGACCCACAA 151885 32 100.0 35 ................................ CTGAAAATGTTTTTCAGGCATTTGTTCGATTTCTT 151952 32 100.0 36 ................................ TCCATATCTACACTATGACAGTCATAGATATAAAAC 152020 32 100.0 34 ................................ TCTAATGCTAGTTTTGTTGTTGGTTGAGGTGCTA 152086 32 100.0 33 ................................ TCTGTCAGCAATGGATAAATATGGTAATCCTTT 152151 32 100.0 34 ................................ CGAGCGGGAATGACCGCACAATTCGTAAAAGGTC 152217 32 100.0 35 ................................ TCAAAGTTCTGAATAAAGTATAAAGTGAAATTGCT 152284 32 100.0 35 ................................ TTCGTAATACCCATATTCTTTAATAAACCCAGAAC 152351 32 100.0 36 ................................ TCGTTGATCTCCGCAAGCCGTCAAGATACGACCGAA 152419 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGATGAGATAAGTCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGAGCACAATATTCAGTATTTGAATGTGATGTCACACCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACTTACGACCCCACGTGTGACAGTCTGCGTTTTTACCACTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACACTGATTTTTCTTGCTTTTTTAAGTAGGGA # Right flank : CATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTCCAGGCGGTTTTACGTTGCAATAAAACTTAATAAATTTAAATAGTATAATATTTGCCGCCCTCTATCTCTCAAGCCAATTCATGCCCAACAACATTCCCCCTTGTATTTCCCCCTTATTCGCTCTAGACTATTCGCCATTTTTAGCTTTCATTATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCTGATGAGCTGGTTGCTCGTTATCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGATGAAGGTGATCTGTTGATTTTTAACAATACGCGTGTAATCCCAGCTCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGTACATCATTTCTTAGCGCATATTCGCTCATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //