Array 1 768730-767907 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVK01000004.1 Lactobacillus crispatus strain JCM 5810 JCM5810_Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 768729 29 96.6 32 ............................G ACATTTTGATTTTTAGTTCGTGGTCCGTTATA 768668 29 96.6 32 ............................G TCAGCGTCTCCTTCTTCCATCAACTGATCAGA 768607 29 100.0 32 ............................. GTCTTTACATAACTTTGCAATATCTGCATCAG 768546 29 100.0 32 ............................. ACTTCCAAAACCAAATTTAATAATTGTGGATG 768485 29 96.6 32 ............................C TTTAATTTTAAAACCTTCTTCATGGTCTAGTC 768424 29 100.0 32 ............................. AGCATTGGTGCAGCAGGTTTATGGCAATTTTA 768363 29 96.6 32 ............................C AAGTGGTTTATATCCAGCTTCTTTAATCACCT 768302 29 96.6 32 ............................C AAGAAAACGGTTCAAGAAGTCTACGACATCTG 768241 29 96.6 32 ............C................ AACCCATCGATGCAAGGTGATTGGGATTTAGA 768180 29 100.0 32 ............................. TACAATATAAGAAGTTTAATTAAATTAAGATG 768119 29 96.6 32 ............C................ ATGGGTGAAATCATCAAAAAAGGAGCTTAGAA 768058 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 767997 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 767936 29 82.8 0 ..G..........A...........AA.A | C [767911] ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 794860-792876 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVK01000004.1 Lactobacillus crispatus strain JCM 5810 JCM5810_Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 794859 29 96.6 32 ............................C AGTACTATGGCAAGAACCAATCAGCTCTTAGA 794798 29 96.6 32 ............................C TTGCTGCTGTTGCTCAATGGGCATTTAATTCA 794737 29 100.0 32 ............................. ACCCGCACCCTTACCAGCACCAGCGACCATTT 794676 29 100.0 32 ............................. ATGCTGATTTAGCTGATGTTGATAAAGCTATT 794615 29 100.0 32 ............................. GACTACAAAAGAACAAGGGTTTAGTGATTTTT 794554 29 100.0 32 ............................. TTTACGTGGATGGTGTAATGAAGATCCTTTTA 794493 29 100.0 32 ............................. ATATGGTTTTCTATTCAAAAAGATAATGTAAG 794432 29 100.0 32 ............................. AGAGTTAAGTTCCTAGAACAAAACGCAATGTT 794371 29 96.6 32 ............................C TTTGGCAATATAAAAAGACTTGATACCTGCGT 794310 29 100.0 32 ............................. TAAATGATGTTAAAAGACAACAACAGCATTGG 794249 29 96.6 32 ............................C TATCACACTCCTAGTAGTTTGCTTCGACCGCA 794188 29 100.0 32 ............................. CAACTAAACGGCTTAGCATTCATTATTAATAT 794127 29 100.0 33 ............................. GTTAAACCATTTCAGCTTATTAAAGATCATGTG 794065 29 100.0 32 ............................. ACTTAGACAAAGCTCTTGAGACCAAACTTGAA 794004 29 96.6 32 ............................C GATTAGCCGGTATGAAAATGGGTTGTCTTTTC 793943 29 100.0 32 ............................. AGGTAAACCCTTTCCTTGTCTGTGTCAGTGTC 793882 29 100.0 32 ............................. GACAAACCGCCGTAGTGTCTTGCTGAACGGTC 793821 29 96.6 32 ............................C AATTGACATGGCAAAAGAGCTTTGCATGATGT 793760 29 96.6 32 ............................C CGCTTGTTTATGCAAGTGCATCTGTTTTTAGG 793699 29 100.0 32 ............................. GCTGAATTTACAGCGGTTGAATAGAATCCAGA 793638 29 100.0 32 ............................. GATTAAAGAGCAGTTGGAGGACTAATGAAGTT 793577 29 100.0 32 ............................. ATGCTAGAAGCGATAAAGGCAGAAAAGCACGG 793516 29 100.0 32 ............................. AAGTTGGGGACCTCTAGGAGATGTTGTAGGAG 793455 29 96.6 32 ............................C AAAATACGCTAAAATGTATTAAAATGCTACAA 793394 29 100.0 32 ............................. ATAAAAGTATAAGAAATAAGCGTTAAAACGAA 793333 29 100.0 32 ............................. TGTGAACTTAAGGACTGAATTTGAGACTTATC 793272 29 96.6 32 ............................C AAAATACGCTAAAATGTATTAAAATGCTACAA 793211 29 100.0 32 ............................. ATAAAAGTATAAGAAATAAGCGTTAAAACGAA 793150 29 96.6 32 ............................C AATATTGCTGCAATAAATACTCATCTGCTCTT 793089 29 100.0 33 ............................. GTTGATTATCAGTCAAACGATCGATTGGAGCAT 793027 29 96.6 32 ............................C GAACAAATATTACTTACCTGATGAGTTTGTCT 792966 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 792905 29 82.8 0 ...........AC....T......T.A.. | A [792884] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGTGCTGGATTTTTAGGTTGTATAGATAGGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATAGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGTGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 798226-797586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVK01000004.1 Lactobacillus crispatus strain JCM 5810 JCM5810_Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 798225 29 100.0 32 ............................. AGTGCATGGTAAAAACGGAAAACCTGATGTAA 798164 29 100.0 32 ............................. CGGATCAATGACTAGATCATGATTATCACTCA 798103 29 100.0 32 ............................. ATGAAAATTTATATTGGAACACAAAATCCAGG 798042 29 96.6 32 ............................C GTCAAGTGGAATCTTATGGTCAACTGTAACCA 797981 29 96.6 32 ............................C GTTGTTAGCAATATCTTTATAGTTGTTTTTTA 797920 29 100.0 32 ............................. AATTCCAGAGATATCTTTCCATAAATCTTTAC 797859 29 96.6 32 ............................C CGATGCCGGACGACATGTCTTTCTAGCAGTCG 797798 29 100.0 32 ............................. ATGCTGGTCGGATCGCTCGATTTATGCAAGGT 797737 29 100.0 32 ............................. TTTGACCCGTCATTTGGGTGTACTTAGATAGG 797676 29 93.1 32 .............G..............C AGTAGCTGTCATTGTTAAAAATCAATATCAAA 797615 29 75.9 0 ...........AC..........A.ATAG | C [797590] ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAGGCAGAAATGCTTCTTTTTTTTATTTGGAGTGGCTTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAAGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //