Array 1 354866-355558 **** Predicted by CRISPRDetect 2.4 *** >NC_006510.1 Geobacillus kaustophilus HTA426, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 354866 30 96.7 38 .............................T CTCAATTAGCTCTTGAATTTTACAACACTACAAAAGAC 354934 30 100.0 38 .............................. CTTGCACGCGACAAAAGGAAGCCCAACGCCGATCATTC 355002 30 100.0 38 .............................. TTTCTAATGATTCCATTCCCTTTCGCATTTAAGAAAGT 355070 30 100.0 38 .............................. ATTTCTTTGCAGCAAAGGTCTGCCGGAGTGGGAGGAAA 355138 30 100.0 36 .............................. TCAACGGCCGAAGCACAAATCGAATTGCAAGCTGAC 355204 30 100.0 34 .............................. CACATTCTTGTGACATTTCTTCTTTGATCCACTC 355268 30 100.0 34 .............................. GCTCGAGATTTTCGATATGGTCAATCAAGTTCAT 355332 30 100.0 36 .............................. ACCTTTAGCTCCTTCGCTGTGTCTCGGAAATTTGTC 355398 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 355465 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 355530 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAGAGGAGGAAGCAAAACCGCGACACGAGGTGAGCCAAATGGAAACGAAGGAAGCGAAACGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGACTGGAAAAAGGAATCCAACAAGGAATCGAACAGGGGATAAAGCAAGGGATGAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACTGACCGGACTGCCGGTTGAGAAGATCGAACGGGTGAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCGAGCCTCACATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGATCGACGACAATGTTTTTTGCGCAAAAATCCTACAGCCATCACGGCTGAACCATATTGACAGAATTTTTGGAATGTGGTATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACGGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGACGCAATCAAATCACGGATGTGCCTGGGGTGCAGGTCGGTCATGTGACGATTCGTAAAGATGTCGATGAAC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1984093-1983729 **** Predicted by CRISPRDetect 2.4 *** >NC_006510.1 Geobacillus kaustophilus HTA426, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1984092 30 100.0 35 .............................. AAAAAATACGCTGGCGTCTTCCGCGTAACGAACGA 1984027 30 100.0 37 .............................. CGGTTCCGCCGTTTCAGCCGGTTCAATCGTTTCAGCC 1983960 30 100.0 38 .............................. AAGATTGCAAACATGCTATCTCCTCCTTTGTTTTATCG 1983892 30 100.0 37 .............................. TCTGCGACATTATATCGGAGAAGCCCGAAAGCGCCTC 1983825 30 100.0 36 .............................. TTGGATAACGCCATGGAAGCGGACCTCCACAACGGA 1983759 30 83.3 0 ................C........C.CTA | C [1983732] ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AGAGTGACCACATCCTTTGCATTGGGTCACACGGTGAAGGACTCGATGGTCAGGATTCGGTGCTTGGCGGAGCGTCGTTCCTTGGTGCCCTGGCTGTCCTCCCGGCCGTTTCTCCGACGGTTGGCGAGAAGGAGATTTCGCCCCAAACCGGTCAGAGGACGGCGGTAAATGACTATTCGTACTGTTTTTTTTCGTACGGGCTTCTAATTCTGCAATACGTGCTTTCAATTGCTGGTTTTCTTGTCTTAACTGTTTATTTTCGTTGATGAGTTTTTCGATGGTCTGTGCTTGACGTTCGATGTTTGCCACCATGCTTTCGAGTGTGAAGACCGCTTCTTGGAAGCCAAAAGCAACATTTGCCATTGTGTTCACCTCCCATGTCTATGATGGTAATTAGTATAGACAAGGAAGGTACGAACAAACCGGCTCTCGTAAATTTTTTCTATGTACGGGCTGAATAGTTACGTTCAATTCTACTGCCAATTGTTGCGATACTTTTA # Right flank : TCTCCCCTTTCGTTAGCTTTGGAAGCCAGCACTACTAAGACTTTTCCATCAATGGGGTTGGGACGACCCGAGGCGGCGCTCAGGGAGACGAAAGACTGGTTTCGTCGTGGAACTGAGGAGTTCCCGTTTTAAGCAAAGGGAAGCGCGAGTAGTTCGCCGCCTATTTCCTCATTAAGCATTCGCACTTCATCCCATCTTTGTTTCTCCTAATGTTGATGAAAAAATATTGTGAACCGCTTTCACTTGTTTTATAATAAAGCTAAACCGGTTTATGAAAACGCTTTTGAACTAAATCGATTTAGTCTGAAAGAGGGATCCCAGTTGAAAAAAGTAACGATGGCCGATGTCGCGAAATTGGCCAACGTTTCGAAAAGCACGGTCTCGCAATACTTGAACAAACGCTATGAATATATGAGCGAGGAAACAAGAAAGCGCATCGCTCAAGCGATTGAGGAACTTGGCTATCAGCCGAACGTCATCGCCCGCAGCTTAAAGCAAAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3279716-3279216 **** Predicted by CRISPRDetect 2.4 *** >NC_006510.1 Geobacillus kaustophilus HTA426, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3279715 30 100.0 36 .............................. TCTTTCCAAAAGTGCGGCCCGAACCGCTCGGCTCGT 3279649 30 100.0 38 .............................. TCATTTCCTGCGGCCCGCCAGACGTCGGAAGGGTGTGA 3279581 30 100.0 36 .............................. ACCAACATCGCGGAGGTTGTTCCCGACTGTAGATAA 3279515 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 3279450 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 3279381 30 100.0 39 .............................. GCTGCATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 3279312 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 3279245 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCTGATATGGACGCATTGCCGATTCAAGAGGAAAACACGTTTGAGTTTGCCTCAAAAAACCCAGGCGTGATGCATGCGTGCGGACATGACGGCCATACGGCGATGCTTCTCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //