Array 1 67425-76153 **** Predicted by CRISPRDetect 2.4 *** >NC_012030.1 Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 67425 31 100.0 34 ............................... ACTGCGACTACCCGATCGAGCGCGGCGCAGTGCT 67490 31 100.0 36 ............................... TCGCTGTTTTCCTTCGGGCTCGACAAGGAGGTCGTC 67557 31 100.0 36 ............................... TGGAGCTCATCGGCCAGTTCGTCGGAGACTGAAATG 67624 31 100.0 36 ............................... TCATCGAACCACCGCCTCAAAGAAGGCGCGACGGCC 67691 31 100.0 36 ............................... GAGAGAAATGACTAGAGAGGTATGAATCAGCGTGTG 67758 31 100.0 35 ............................... GGGACGGTCTACGTCGGCAGCGACGATAACAGCCT 67824 31 100.0 37 ............................... CAGGTGACGCCCGAGGACGTTACAGAGACGCCGATAG 67892 31 100.0 36 ............................... ACCTGTTCGGGGATAATCGAAAGCACTTCGATTCTC 67959 31 100.0 36 ............................... TGGTATCTCTTCATCGGTCGTCACCAGCGTAGATCT 68026 31 100.0 36 ............................... GATTAACTGATTCGGCTCCGATCCGCTGCCTGTTCA 68093 31 100.0 35 ............................... TCGGTAAGCCCGCTCCGCTCTACTTTTCGTCGTCA 68159 31 100.0 37 ............................... GCGACGTGAGGGCGTTCTCGATCACCGACACGGCGAA 68227 31 100.0 35 ............................... AAGCCGCCACCGAGGACATCGTCGACGCTCGTTCG 68293 31 100.0 35 ............................... TCTCCTTCGTGATCGCAACGATCACAGGTGTAGTC 68359 31 100.0 36 ............................... TCGTCGCCTTCGCCACCCTCGCCGCGAGGGCTGGGC 68426 31 100.0 35 ............................... AGCTCGATCTCGACCGGCACGTGGTCGGGAGACTC 68492 31 100.0 35 ............................... AGTAGGGTCGCCACACCCGCGAAAGCAACGAGCCC 68558 31 100.0 34 ............................... AAAAACTTATGGGCCAACGATCCGTTAGTTGCTC 68623 31 100.0 34 ............................... CACACCCCCACCCCACACACACGGACCGTTATTC 68688 31 100.0 33 ............................... ACGAGCGCGGCGGCTGGAACGAGTCGGGTCATA 68752 31 100.0 38 ............................... CCTTCCTACGGTGCTGAAACCATGAAATCACTGAAAGA 68821 31 100.0 36 ............................... CACCAGCGAGGAGCCTATTAGCCCAAAAGAGGGGCC 68888 31 100.0 35 ............................... TACTGCCGTCTGGTCGCTGGTTGCCAAACCATACT 68954 31 100.0 36 ............................... CACGCGCTCTTTTGGCCGACCGATAACCTGCCGTAG 69021 31 100.0 36 ............................... CCGGGCGAACCGCTGTATCCCGGTGAGAATACGATT 69088 31 100.0 36 ............................... CATGGATCCGTCCTCAAAGCCATCACCAACTACCAC 69155 31 100.0 36 ............................... CCTATCCTGTTCGAAGAACGTCCGCTGAAGGTCGAG 69222 31 100.0 36 ............................... GGCGGGCGGCAGGCAATGGCGTCGGTTACGCGACGA 69289 31 100.0 36 ............................... GTGGTTGTGGATTCGGTCGCCACTCTCGGTCTCGAT 69356 31 100.0 36 ............................... CTCATCGGGGAGCGATGAGAATTGTGAGTCGTCGAG 69423 31 100.0 35 ............................... TCGGGGTTGATGAGCATCGCGATGTCGTCGGGCCA 69489 31 100.0 37 ............................... CGTCCGTCATCGCTTGCTGCTGACGGGCCTTGTGGGA 69557 31 100.0 37 ............................... ACAGGCCGATCGTGCGGACGTTGTCACGAAGCCGGGT 69625 31 100.0 37 ............................... GCGGCCACTGACGGCGGCGCAGCGACCGACGAGCCCA 69693 31 100.0 35 ............................... TTCTCGATGGCGTCTTCCTTGAGGTCGTACTTGAT 69759 31 100.0 37 ............................... CGTTCACTGAGACGTATTCTGTGGGGGCCTACAGCGT 69827 31 100.0 36 ............................... TCTTGACAGGGCATACAGACCCATCACCACGAGTGA 69894 31 100.0 37 ............................... GCTCCAACAGCCCCGGCCGGACGACCGAATCCCACCA 69962 31 100.0 37 ............................... CGTCCTTGGGAAGCGGGTTGAATGGGAGATCGCGATC 70030 31 100.0 35 ............................... GCGATCTCCGCGCCGGGCTCGGCGTGGTTGATACT 70096 31 100.0 36 ............................... GTTCGCGTAGTTGTCCTCGACGATCCAGCGGTCGTC 70163 31 100.0 35 ............................... CGAGTCTTCGGGTTGCCCGACGAGTCCGACGGGAC 70229 31 100.0 35 ............................... AACTGGCCGACGAATGGGAGGGCGAACTGCCCGCC 70295 31 100.0 36 ............................... ATTAACGTTGATACGGACAAAATCGTGAGTGATACT 70362 31 100.0 34 ............................... CGTCTACCGCCATTCAGACGGGACGGGCGAACCT 70427 31 100.0 35 ............................... TACTTATAGGTTGTTATAGAGGATTATAACTCATT 70493 31 100.0 35 ............................... CGTAGGCGTCGATCATCCGAAAATCGCCTCCGGCG 70559 31 100.0 34 ............................... CCAACCGCTTGGGTTGGGCGTCGCCGCTGTCGTC 70624 31 100.0 35 ............................... AAGAAGTTCTCGCCGTCGTCCTGCCACAGTGAACA 70690 31 100.0 34 ............................... CCGGTCCCTCGGCGGTCGAGCAGCTGCAAGCCGA 70755 31 100.0 35 ............................... TCAAACGCGAGGATGAGTCGACGTCGGAGTTTTTC 70821 31 100.0 35 ............................... TGGCGAACTCAAGTCACTCCGGCGAAACGGATTCT 70887 31 100.0 35 ............................... AGTCCGTTCCGGATCTCGATCGTTGCCGTTCCGTG 70953 31 100.0 35 ............................... GAGGTCACCGTCAACGGGACCAACGGCTCGGACGT 71019 31 100.0 34 ............................... TCAGCCCAAGACGACGAGGACGGCGAGAGAGACC 71084 31 100.0 35 ............................... CTCGATCCCCAGCGCCGACGATCTCGGAATCATTG 71150 31 100.0 36 ............................... TACCAATGCTCGTTTTGGCGATCGCACTCGGAGCCG 71217 31 100.0 36 ............................... TGATTTCGCTGAGAGTGTCGTCAAACCGACTTAAAT 71284 31 100.0 35 ............................... GTCGTCGGAATGGGCAACGCGCCGATGAACAACCA 71350 31 100.0 35 ............................... GACGAATCGAGGTGTGACTGCAGCGGGATGTCGAC 71416 31 100.0 36 ............................... GCCGGGCGCGACGTCGATCAGCACTCGGCCGATTGT 71483 31 100.0 36 ............................... CGCCTCGTGATTGAGGCATTCTCCCGCAAGGGCGAG 71550 31 100.0 35 ............................... TCAGTCGTGGTCGTTTGCTGACCATCCTCACTCGT 71616 31 100.0 36 ............................... GCCGTCCTCGTCTCGCGGAAACAGCTCTGGGAACTC 71683 31 100.0 37 ............................... GACGAACTCGAGGAACTCCGTCGAGGACGTGGTAGAC 71751 31 100.0 36 ............................... CCCGCACCTCCGCGTCCGCCGCGAGAACGTCGAAAA 71818 31 100.0 33 ............................... GACGGGGATCGTGATCGGCGAGGGGTTCCGGAA 71882 31 100.0 35 ............................... GTCGACGTCGTGGAGGCGGATCCGGGTCGGTTCCG 71948 31 100.0 36 ............................... GTTGCCCAGTGTGTTCCGAGTTGCACATCTTGATGT 72015 31 100.0 35 ............................... ACTGCGATATCGCCCACATTATACGACTCGTCAAG 72081 31 100.0 35 ............................... AGGGGGCGTTTTCGTGATTGCCGGGCAGACAGGCT 72147 31 100.0 35 ............................... GATCGCCCGATCTCGTGGAACGGCGCGATCACCCA 72213 31 100.0 35 ............................... TCGCGGATCGACCCATCGACGTTCCCGTTTTCGTC 72279 31 100.0 34 ............................... TATCGGCCTCGGTGGCGAGATCCCGCAGTTCGTC 72344 31 100.0 35 ............................... CACTGAGCTATCAGGTTTTGCATTTGGGTATCAGT 72410 31 100.0 36 ............................... GTCAGTCAACTCGCGAGCAACCTCGTGGTTCCATTC 72477 31 100.0 34 ............................... GTCGAGTCTTGGCCTGCCGAGCCGATCCGCACCT 72542 31 100.0 36 ............................... AGCGTTCTCTCTGCTCGAACTAAGACTAATTGGGAT 72609 31 100.0 34 ............................... ACCGAGGACGAGGTTGCGGAACTGGCACGTAGTA 72674 31 100.0 36 ............................... CTGTGGAACCTTAAACGAAGTCTCGAACGCACGCTC 72741 31 100.0 35 ............................... TTTAGCGGTTAGCTGGGTAAGTGCCAAAAACAACA 72807 31 100.0 37 ............................... CTTGTGCACGATCCTGCTGGACGTCGGGGTTGGTGAA 72875 31 100.0 36 ............................... GAGGAATTTGGACGGTGAAATTGCTGAATACAGAAT 72942 31 100.0 36 ............................... ACGATCAACAACTCGGCAGATCCGACGAACGCGGAA 73009 31 100.0 37 ............................... CGCCGTCACTGTTCTCGACCATCGTCTCGCCGAGCTG 73077 31 100.0 36 ............................... GGCCTGTACCCCGCGTTCTAGGTCTTTTAGCTTGGC 73144 31 100.0 35 ............................... CGCGTGTGTTGATCCCGTCGCTGAACAGAGTGACT 73210 31 100.0 34 ............................... CATATGTTGATAATCGAGGACGGAAAGGGGGACA 73275 31 100.0 35 ............................... CGGAACGCCGTCGACGCCACTTCGGCCCCTTGGCC 73341 31 100.0 36 ............................... GGTGTCGACCAGTTTGACGTTGCTGTAACTGAGATC 73408 31 100.0 37 ............................... GTGGCGAGTGCCTTAGACGACACCATGCCGTCTGCCC 73476 31 100.0 35 ............................... TCCGTCTCATCAGCCGGAACGTAGAAGTACGGCTC 73542 31 100.0 36 ............................... TTGCTGTGCGGTGCGTTGCTGTACTGTTGTGTTACT 73609 31 100.0 36 ............................... TGGCGAGTGCCTTAGACGACACCATGCCGTCTGCCC 73676 31 100.0 32 ............................... GCGACGGTCGAGAAGAGCGATTCCTAGATAGT 73739 31 100.0 35 ............................... TCTGGGTTGATACCTTCAGTAGTAACCCTTCAGTA 73805 31 100.0 35 ............................... TCGATGTCGTTCTCGACCGGCTGGACGGCGTCGAT 73871 31 100.0 35 ............................... GACTCCGAGGCCCCGACCGCGTCGGCCCACGCTTG 73937 31 100.0 36 ............................... CTCACCGCGAGGCTCGTACACACCCTCGTCTGAGTT 74004 31 100.0 35 ............................... GGCGCTCGGATCGTCGGCAGAACCAACATGTCCTC 74070 31 100.0 34 ............................... ACGCCGGCAGCTGCGCGGCGTCACCCGAGTCGTC 74135 31 100.0 34 ............................... GCATTCCCGAGGAAAAGCGGTCGGTTCAACTCAA 74200 31 100.0 37 ............................... GCGGCCCGACCAACGCCCGAACCTTCGTCGAAGACGC 74268 31 100.0 35 ............................... GCGACGCCGGCGCCCTCAAGTTCCCACGGATACGG 74334 31 100.0 34 ............................... TATCTTCGTCTTCGCGACGCTTCCGAACGACTCG 74399 31 100.0 34 ............................... CCCCACGATTGAGGCACTCTCCCGCAAGGGCGAC 74464 31 100.0 36 ............................... GCGGAGTCCGACCGCGCCCAGGCCGCCGGCGAGGTC 74531 31 100.0 35 ............................... AACGCGAAGCCTGAGGGCGACGATACGTGGCGGAA 74597 31 100.0 35 ............................... GAGTACACGTTCGTCGACGCGACGGACAACACGCC 74663 31 100.0 33 ............................... TAGGCTGTTCCCGTTTGAGTCGGTGAAGTCCTT 74727 31 100.0 36 ............................... GCCGTCTATCCAGTAGGTCCCTCCGAGCGCCTCGAT 74794 31 100.0 35 ............................... TCTGAATCGGCGTTGTCGCCAGCCCACGGATGATA 74860 31 100.0 35 ............................... CCTCCTCGTGTCGCTATCGCTGGCTCAAACCGGGG 74926 31 100.0 35 ............................... TCGCGGCCGACCAGCGGGGACTACGACGACCAGAT 74992 31 100.0 35 ............................... GATGGCTGGGAATCGGCTGGCAGAGCGAGATACGA 75058 31 100.0 36 ............................... ACGAGATTGTCCACCCGTTCGGCGCGTTTACCTGTG 75125 31 100.0 36 ............................... TGGCGCAAGACAGGGTCACAGTCGCTTTTTCGAACG 75192 31 100.0 34 ............................... CCCCACGATTGAGGCACTCTCCCGCGATGGCGAC 75257 31 100.0 36 ............................... GTGGATCGCACCGCACACCTCCCGGTCGATCCGGAC 75324 31 100.0 34 ............................... CGGGATCGCGGACGTCATCACCGTCGACGAAGGC 75389 31 100.0 35 ............................... GGCGGTTCGTTCACTGCCGTCGTAACGTACGACAA 75455 31 100.0 34 ............................... GGTTCGACTTCGGCAGGGACAGGGCTTCACGGGC 75520 31 100.0 36 ............................... CATTATCGACCCGGTTCCCTCGACCACGATCTTCCC 75587 31 100.0 36 ............................... CACGAGCGCGTGGTCGTGATCATGCTCGACGAGATC 75654 31 100.0 33 ............................... TTGAGTGGCTCGTCGTTTTCGGATTCGAACCGT 75718 31 100.0 34 ............................... TCGGCAACTCCTCGATCTCGTCGGAATCCGAGAC 75783 31 100.0 35 ............................... GATCGTCGGTGTTGTCGACTGCGCTGAGGTGTTCG 75849 31 100.0 36 ............................... TCGGCTTCTGCTTCGATTTGTTCAGTCATAAATGGT 75916 31 100.0 36 ............................... TCGGCTTCTGCTTCGATTTGTTCAGTCATAAATGGT 75983 31 100.0 35 ............................... GCCGGCAGGCCGAGCGTCGCGAGCGTGACGATCCC 76049 31 100.0 43 ............................... ACGAACAGACACGCAAGCTCAACATCCACATCGACGGGCTGTC 76123 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================== ================== 132 31 100.0 35 GCTTCAAACCCACGAGGGGTTCGGCTGAAAG # Left flank : TGGCATAGGCGTGGAACGCAGTGGTTCCACGCTTCGCTACCGAGTGATAGAGGCCGTCTGTGTCGTCTTCGTCACCGTAGTAGGGCCGCAGGTGGAGGTCTGCGCAGACCTCCACCTGTTCGGGGAGCAATTCATCGAGATCCTTTCGCAGGAGCGTGTTAGCGACTCGTTCGAGCCGTTCCGGCTCGAACTTCGTCCGAAGATGGTAGAGGACCGTGTTCCCAGCGGGTGAGTTCTGGCTCGACGCACAGAGCGTAGAGACAGAGGTCCCGTCGGCGCAAGCGCCGACGAGGACCTCATAGATGTCTTCAGCAGTGATTTCAGCGTTATTGGCTAACGAGAGCGAAACTTCCTCGTCAAGGCGGTTGACGAGAAAGTTAAGAAGCTGGTCCTCGTGGATCTCACCGTCTGCTTGTTTGGTTTTAGACACACCTTCAGCAAGCAGACGTTCTAACTAAGCGGCTTTGTGAAGTACTGATTTTCTGAATGAACCTGCATTT # Right flank : GATGTGCCAATATAGGCCACACAAGGCTCATATACGTGGTCTATGATTTAGAACTTTCGTCGACCTCCAATTCTGGCCAAACCCTAGGGGGTCGACGGAAAACTACGTAAATCGACTCCCGGGGTCGTCGCCAGCACCTAAGACAGTGTGTTGAACCGCAGCTGAGACCTCCGCTTCGAAAATATAGATCGAGTCCTCATCGATCAGCTCCGACTTGATGTCCTGTTTGATTCCTACGAGCTGCCCCTCTGTGATGTCCCCATAAAACACGGACTGCTGGAGATGTTCCAGCCGCTTCCGGAGGAGTTTTCGGTAGATGTGGGTTCGTTCGGCGGGAACATCGTATGTCACAAGAACGAACATCTTACCACCACCGTTCGGTCGGCCGGTACGGCTCGCCGGTCAGTATGTGCTTCTTCAAACTGTACACATCCGTTTGCACGAGTGTTTTGTAGCTCACGTTTCGCTTTAGTCGGGGATGCTCGACTGTTTTATCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCCACGAGGGGTTCGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 333645-339403 **** Predicted by CRISPRDetect 2.4 *** >NC_012030.1 Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 333645 37 100.0 36 ..................................... TTACCCTCAAGGTACTATGTGCTGTGCTGCACTGTT 333718 37 100.0 37 ..................................... GACATCCACGGTGTTAACCCCCGGTGTTGTACCTGTG 333792 37 100.0 36 ..................................... AGAACCGCGCGTCGGGGACGTCGAAACAGGCGAACG 333865 37 100.0 35 ..................................... AAAGTCGCTGAGGTCGCCCTCGACGGCTTCGAGGT 333937 37 100.0 35 ..................................... ATCCACAGATCCGGACCCTCAAAGGGATACCCCCC 334009 37 100.0 33 ..................................... AATTGTTCGAACTCGACCGCGGTGTTCAAGCGC 334079 37 100.0 36 ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 334152 37 100.0 35 ..................................... CAAGAAAGGGTCACAGTCGTGTTTTAGCACAGTCG 334224 37 100.0 36 ..................................... CTGAAGGCCGGGCGATACGAGTGCGGACACTGTCAG 334297 37 100.0 31 ..................................... CGGGACGAAGACCATCCCACCGATCTCGGAG 334365 37 100.0 35 ..................................... CGTCCGATGGACTCCGTGACGGGAGTGGGAGTGTC 334437 37 100.0 36 ..................................... CGTGTCGACCTCTCGAACGTCGAGCTCGGAGATATT 334510 37 100.0 36 ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 334583 37 100.0 35 ..................................... ATATTGTCGATGTATTGCGCCGAATCGGTTGGGAT 334655 37 100.0 35 ..................................... CTGCTTGAAGTGCCGAACCACTTCTAAAACAATCC 334727 37 100.0 32 ..................................... CATGAGGGTGAGACAGTGGGGGCCAACCTCAC 334796 37 100.0 34 ..................................... AGCGTGGTTCCGAAGTCACCGAGCTCGTCCAAGT 334867 37 100.0 36 ..................................... ATCAGTTTTGGATACCTATAGGAATAGGTTAGTTAG 334940 37 100.0 36 ..................................... GCAGCTACAGGGTGGGTGGTGACAAGCCAAAAAAAA 335013 37 100.0 33 ..................................... CAATCTTCGGGAGTGCCGAATGGGGTTATCCAG 335083 37 100.0 35 ..................................... CTAACACAGGGGGCTGCGATGTTGGTGGTTTTGGT 335155 37 100.0 35 ..................................... GCCAAAGGGGATCGTCTACGCGGAACACGAACCCG 335227 37 100.0 34 ..................................... GGGCAGCGTGACCCCCGTCTCGCCGCTAAACGAC 335298 37 100.0 36 ..................................... AAGCAACCCGACACGTTGACGAAGAGTAAGTAGCGG 335371 37 100.0 34 ..................................... TTGCAGACACAGATTGTCTCACCATTGAAGAGAT 335442 37 100.0 36 ..................................... TTACCCTCAAGGTACTATGTGCTGTGCTGCACTGTT 335515 37 100.0 39 ..................................... TTCCGTCGGGGGTTTCCTCTCCGGGGTGTTCGATACCTG 335591 37 100.0 37 ..................................... GACATCCACGGTGTTAACCCCCGGTGTTGTACCTGTG 335665 37 100.0 36 ..................................... AGAACCGCGCGTCGGGGACGTCGAAACAGGCGAACG 335738 37 100.0 35 ..................................... AAAGTCGCTGAGGTCGCCCTCGACGGCTTCGAGGT 335810 37 100.0 35 ..................................... ATCCACAGATCCGGACCCTCAAAGGGATACCCCCC 335882 37 100.0 33 ..................................... AATTGTTCGAACTCGACCGCGGTGTTCAAGCGC 335952 37 100.0 36 ..................................... CAGATCGGAACAGAACGGTAAGTAGCGGTTCGCTGT 336025 37 100.0 35 ..................................... CAAGAAAGGGTCACAGTCGTGTTTTAGCACAGTCG 336097 37 100.0 36 ..................................... CTGAAGGCCGGGCGATACGAGTGCGGACACTGTCAG 336170 37 100.0 35 ..................................... AGCCCGTCACCATCAAAATGCCTGTTGATACTAAT 336242 37 100.0 36 ..................................... TTCATCGTCGTCGACCACTCGTCGCCAAGAACGCAC 336315 37 100.0 34 ..................................... CGAACAACGGCTACCTTCACATTCACATTGCGGT 336386 37 100.0 35 ..................................... AGCGATTCAACGAGTTTGTAGAGTCCGAGCGTCAT 336458 37 100.0 35 ..................................... CACTGTAGGCGGCCACTCCCCCACTTTGATCGCCG 336530 37 100.0 38 ..................................... GTGTTGTAGCCGGAGAGAATCGAATACTGTTCGATGAA 336605 37 100.0 34 ..................................... TACTGTTTGTCCGCGTAATCCGGATCGAAGCGGT 336676 37 100.0 36 ..................................... CGCTGCTCATCGGCTACGAACCCGAAGTACCGCGAT 336749 37 100.0 37 ..................................... ATATCGCACAGGTCACCGGATACAAGAAGGATTCACG 336823 37 100.0 33 ..................................... GAAGCAGGGGCTTGCCCCTGACCCGACCGGCGG 336893 37 100.0 36 ..................................... TGTCCGTTTTGGACGGGCGAGCCAGCATACTGTGAT 336966 37 100.0 35 ..................................... ACCTTTTGAGGTCCAGCGAGTAGAATATTCTTTGG 337038 37 100.0 35 ..................................... CAATATTCACCGACCAGGATGTACACGAACTCCGC 337110 37 100.0 37 ..................................... TCGGTCCTGTGTCATCCATCGGCTGCGGTCAGCGTCT 337184 37 100.0 37 ..................................... TGGTCTGGTTGTGGTTCGAGACAGTCGCGGTCAGTGT 337258 37 100.0 36 ..................................... ATTTCGTCGGCCTCGTAGCCGTAGGCGCTCATCACG 337331 37 100.0 36 ..................................... GAGGTACTCGACCTCAGATACGTCAGCGCTGTTGAC 337404 37 100.0 39 ..................................... CTGGGATGACGAGGTTCCGCGCTGCGAGGATCGCGTTGT 337480 37 100.0 34 ..................................... TGATCTCTAACTCTGGCGAGATCAACCCGTGTTC 337551 37 100.0 34 ..................................... TAGTACTCTGTCCCGCCGTCGTAGGACGTCAGTC 337622 37 100.0 34 ..................................... GTTCTTTCGAATACGATACAAGAGTAGCGGGCGG 337693 37 100.0 34 ..................................... TAGTACTCTGTCCCGCCGTCGTAGGACGTCAGTC 337764 37 100.0 37 ..................................... ACGTGGACGTCGGCGTCTGGGATACCTATGGCAGTGC 337838 37 100.0 36 ..................................... TGTTCTCGTATAGGCTGATTGCCCTGTTCTCATTAA 337911 37 100.0 36 ..................................... TCCAAGGGACCTTCCGAGCCCCAGATCGAGAGACTG 337984 37 100.0 34 ..................................... GCGGACGTATCCGCACCAGTGTCCCATGCTTGTC 338055 37 100.0 36 ..................................... ACCTGGAGTTCGCTTGTTACAGGGGATAACTCTTGG 338128 37 100.0 35 ..................................... CATCCCCGAGAGCGTGAGCGACGCGCTGCCGACCG 338200 37 100.0 36 ..................................... ACATAAGTGTGTGTGTCATTACAGCCAGTGGTGCTG 338273 37 100.0 36 ..................................... ATTCCGTCAAACGGGAAGACAAATACCAAGAGAGTG 338346 37 100.0 35 ..................................... GGGATCTCGTCGCCGCGGTCACTGTCGAGTATGAC 338418 37 100.0 38 ..................................... CACGACATAATCAATGACGACTGAACGCGAACGCAGAA 338493 37 100.0 36 ..................................... GCCATGCACCGCCACATCGAACTCGGCGGTCATGGC 338566 37 100.0 36 ..................................... GGACGCCCGAGCCGCTGTGGGACGACGACCGCGGAC 338639 37 100.0 36 ..................................... CGGAATACAGCGGAGCTAGTCCAAACGCTCGGTGAA 338712 37 100.0 38 ..................................... CACGACATAATCAATGACGACTGAACGCGAACGCAGAA 338787 37 100.0 36 ..................................... GCCATGCACCGCCACATCGAACTCGGCGGTCATGGC 338860 37 100.0 36 ..................................... GGACGCCCGAGCCGCTGTGGGACGACGACCGCGGAC 338933 37 100.0 36 ..................................... CGGAATACAGCGGAGCTAGTCCAAACGCTCGGTGAA 339006 37 100.0 36 ..................................... GATCGATTCGAGAGCGTCGAGGCGGTCCGGCGGGCC 339079 36 89.2 34 ......G...-..............T......A.... AAGCAGACCGCCGACCGCGGAGCCAGTCAAGTTT G [339087] 339150 37 75.7 36 ......G...C..A....T.T.CA....A......T. CCACTCCCGCTGGTCAGTTCGTTAACCGCGCGTTCG 339223 37 83.8 35 .........GC.......T...CG....A........ CACGAGGTGAAGGTGTGCGAGCCCGGCCGCCGGTT 339295 37 81.1 35 .........AC.......T...CG.T..A........ GTTGTGACCCGTCGGCGGTAGCAAGCTGCTGAGTT 339367 37 81.1 0 ........GGC...........AT..A...C...... | ========== ====== ====== ====== ===================================== ======================================= ================== 80 37 98.9 35 GTCGAGACACTCAGAAAACCCAGCACGGGATTGAAAC # Left flank : TTGAGTACACTGTGACTCGGCGTAAGGCAGTGCGACAGCAGGCGATTCTCTTACGGAAAGCAATCACTGGCGAGTTGGATGAATATCATGCGCTAACTTTTTCAAAATGACCATGCGCTTGGCAATAGCCTACGATGTGAGTGAGGATTCGAACCGCAGGCAAGTATATCGAACGCTCCAGAGGTATGGGGCATGGCGGCAGTACAGTGTCTTCGAGGTCGACGTGACTAAGACAGATCGCGTTGAGCTTGAAGATGAACTCGAATCTCACATCGAGCCATCGGACGGTGATCGAATTCGTATTTATCGGCTCTGTCAGTCCTGCCAAGACAATACAACCGATCTCGGGTCCGATCCCCCCGGCGAACAATCGAACGTTCTCTGAACAGGGTTACGTCGACCCTTATTAAGTCTCTGTACAGCCCCAGTCGACGTAGCGGGGGTTAGATTTTGAGCACTGAGAAAGGCTTTTGACCCCTATAACCGTATATTCACCCCCT # Right flank : CAAAGTAGGGGTTTGCTCCCGACCAGACCGGCGGAGTTGAGACGAATTGATGTCGGGCCGTAATCGAGTTATACGATAATACGATTAGATTCCACAGACAATCCCAGCTGATCGCTCTAGTAGGTTTCTGTCTCAACATCTAGCCGTTCGAAATCCTTCAGATTACGGGTCAGTACAGGCTCGTCAACTACGTCAGCTGTTGCAGCAATGATCACGTCACCGTCATCGACGGTATTCCCTTCATTTACGAGTTGTCCCGACAGTCGACCGGCCTTCCGCATAACTGCGGTATCGGCTGGGTGAACGGGTTTTGAGGAAAGCACAGTCTCGACTTTCTCACGTTCTGCATCCGACTGGTTCGACCGCGCAATCCCGTAAAAGAGTTCAAACAGTGTCATCGAGGACAGCCGTTGCTGGATGAGGTTCTCTTCGAGCTCACGGGCTTTCGAGATCGCTCCCTCATCGCTATTCATCAGGTCGATCAGAAAAGACGTATCTAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACACTCAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //