Array 1 93214-94501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 93214 30 100.0 37 .............................. GCGGACTGGATCGACGTGATTTTCCGGATCTGCGATG 93281 30 100.0 37 .............................. TACAGCGTCGGCAATGGTCTCTGTGTTCACCGTCATA 93348 30 100.0 40 .............................. TGAAGATGTTCGCCTCAATGTAACTTCTGAAGCACGGATA 93418 30 100.0 40 .............................. TGCTGAATCCTGAGTTTCAGGAACGCTTGAAGGCGTTTAT 93488 30 100.0 37 .............................. AGCGGAGAAGGGCGAGCTGGCAGGTCACGTCCTTGAG 93555 30 100.0 38 .............................. CGGGCGGGGCCACGGCCGCTTGGGCCTCGTGGCGTGAG 93623 30 100.0 36 .............................. CAAGATGCGTGCTTCACTTGTAACGTTCAGTTTAAC 93689 30 100.0 41 .............................. TATCCTTATCTTTTCGTTATCATTGTGTGTTTCTCTCTCTT 93760 30 100.0 37 .............................. CACACAAAAGGTCACTCGGAAGGTTTTTGGCGGTCGA 93827 30 100.0 38 .............................. GGGTGCTTTGTTGGGGTTCCCGGAGCGGGGAAGACGAC 93895 30 100.0 40 .............................. CCGGGAAAAAGCTAATCGATAATGTTGTCAAAATTGAAGA 93965 30 100.0 37 .............................. CCAGTTGATCGGCCTCTTTGAGGACCTTGCGATAGAG 94032 30 100.0 39 .............................. GCAGATCTGCTCATCACTTACTCCATCCCGTTTCAACTG 94101 30 100.0 36 .............................. ATGGGCGGGGCGTACACCCGCCCACGGGGGGGCGGC 94167 30 96.7 37 .............................G CGTGTTGTCCCGCGGGCACTGTCAACAGCCCGGTTCA 94234 30 100.0 208 .............................. GAATTAAAAGCGAGTGGCGAGTAGCGAGTTGCGAGTAGTATTCCTGGAGCACGTCAAACGGAAGAGTACACCGCCTGTTAGTCGTGTGTCATCACCTAGCTTGGAACTGAAAAGAGAAAACAATCGCGTTTGCGGAAACAATCGGCGGTCTACTGAAAAACCAATTGTCCACCTTCACCACTCGCTATTCGCCATTCGCTATTCGCCA 94472 30 80.0 0 AAACA...G..................... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 17 30 98.6 49 GTCTTAATCGAACCAAGTTGGGATTGAAAC # Left flank : ACGCGGCAAGAGCCTTTTGCCCGCTGGAGTCGTCGATGTTGTCGGCCAGTTCCACAAGGGCGACCTGGTCTCCCTCTGTGATTGTGACGGATGCGAATTCGCCCGAGGGTTGACCAACTACTCGGCCGAGGACATCCGCCGGATCAGGGGCCTGCGGACCCGACAGATTGCCCAGGTCCTTGGCTGGCTTCCCTACGAGGAGATCATCCACCGGGATAACCTGTTGGTGACCCGCTCCGCTTGAAGTGGGGAGCCGGGGCGGCCATGCCTACCCAGGGGGGCTTGCCGTGGCCACATGCTGGGGAATGTGTCTCAAGGGTAGCATCCCCACCAGCTGGTTATTCGATGCCATTCTTGGAGCGGGCTTGACAGATTTTTGGGGCTCTTGTACGCTTAGTTGCAGTCGATCTCCAGGGATTTTCGCACGACCGGCGATCGACTGCAAAACAGGGGGTGGAGGGAGGGTGGAAAGCCCGGAAAATATCGGCTTTCCGGGGAGG # Right flank : CGAATAAAGGGGCGAATGGCGAATAGTGAATAGCGAATGGTAAGCGTCGCGGCCGGGAAAGAATAACGTCGGGCAGAGATTCATGGCAGGCGGGCGCTCGGTCTTTCTGGGCCAACCTGCCGTTTTAACGCGATTCGAACTCGTCTTCCAAGTTCACGGTAGGGGCCATTCATGAAATTCCCCCAGATTGTCGGAGGGACCTGCTTGTCAGGTCCGCTTAGCCGCCTGGATCATCCATCCCTTCTCGTCGGGCACGACAAGCGTGCCCCTCCGAAAAAAGTTCGGAGGGACCCACCTGTTGGGTCGGCGATTTGAGGTTCGATGATCGATCGGTGTTTTACCGCGGACTAAAGTCCCGCGTGGAAAGCGGGGCTGAAGCCCCGCACTCCATGGAGTGCGGCGATTCATCGCCGCTTTTCGGTGAAGGCTTCAGCCTTCATCCACCTTGGCAATTTCAGATGTTTTGCCGGGAGCACGAGAAGCGTTTGCGAACGATTTGT # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-1.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGAACCAAGTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2847666-2852959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2847666 36 100.0 30 .................................... TGAGAGCGTCAAGTTGAACGTTACAAGCGA 2847732 36 100.0 29 .................................... CACTTTCCCATAAATAGTACAAGATTGTT 2847797 36 100.0 30 .................................... GAGGGATGTCTCTGGAAAGGCCTCGACCAA 2847863 36 100.0 30 .................................... TACTCCGAATTGTGCTACTGCGGGCGCAAA 2847929 36 100.0 30 .................................... GAGGGATGTCTCTGGAAAGGCCTCGACCAA 2847995 36 100.0 30 .................................... TTCGCCGCTGCACTCGTGGCATAGGTACGC 2848061 36 100.0 30 .................................... GAGGGATGTCTCTGGAAAGGCCTCGACCAA 2848127 36 100.0 30 .................................... TACTCCGAATTGTGCTACTGCGGGCGCAAA 2848193 36 100.0 30 .................................... ATCTCCCATTCGTTGAAGGATGCCCCGAAT 2848259 36 100.0 30 .................................... TTCGCCGCTGCACTCGTGGCATAGGTACGC 2848325 36 100.0 30 .................................... CACGGCTCTGAACTCGCTGCGGCCATTGCG 2848391 36 100.0 29 .................................... TGGGCTTCCTGAGCTTGTCGCGCCGCTTC 2848456 36 100.0 30 .................................... ACGCGGCGTACTCCGCCCGCGTCAGCTGGC 2848522 36 100.0 29 .................................... TCGCTAATCTACGACCGGGCGCCGGTGAG 2848587 36 100.0 29 .................................... GTACCGCGGGAGTTGCTCTGGTCGCATCG 2848652 36 100.0 30 .................................... TGGCCGGATGCTCCCGTACGACGAATCAGT 2848718 36 100.0 29 .................................... TCAATGACTTTCGCCTGTTCATCCGAAAG 2848783 36 100.0 29 .................................... TCAATGACTTTCGCCTGTTCATCCGAAAG 2848848 36 100.0 30 .................................... ACACGCGATGTGCGGCGTCGGTCTTTTGTT 2848914 36 100.0 30 .................................... TCTATCGTTCTTGGAATGGGATAGGCATCC 2848980 36 100.0 30 .................................... TGTGAGCCCGACGTTCCAGGATTGACTGCA 2849046 36 100.0 29 .................................... GTGTCCCGGGAAGTCCTGGAGGGCATGAT 2849111 36 100.0 29 .................................... CCTTCGTCGATCCCGTTCTCATCGCGCGT 2849176 36 100.0 29 .................................... CTTTACTGTCGTCAATCGCTGTGTTTTTA 2849241 36 100.0 30 .................................... CCTGTGCCGTCGCGAGTGCGCCTGCCCTAC 2849307 36 100.0 30 .................................... ATTATCTTGCGTGTGTTAGCGCCGAATACC 2849373 36 100.0 30 .................................... CGCATGATGCGTTTGCGTGCCTACCAGAAA 2849439 36 100.0 30 .................................... CGAAACGTGATCCACTACTTTCGAGCGATG 2849505 36 100.0 31 .................................... GCTTTGAGTTTGTAGTTAACCGGTTCTGCCA 2849572 36 100.0 29 .................................... TGGCTATCGGGATCGAGACACAGGACGTT 2849637 36 100.0 30 .................................... TATTTCGCGCTCTGGCTGGCAAAGCACAAG 2849703 36 100.0 30 .................................... GGCTGAGGCGAGATGATCGAAACTGGGGCA 2849769 36 100.0 29 .................................... AGCCCGCGATTCTTGGAAGAGGCCGAAGA 2849834 36 100.0 29 .................................... AGCCCGCGATTCTTGGAAGAGGCCGAAGA 2849899 36 100.0 30 .................................... TATACTTTTCCCCCAGATGACGTAGGTCTT 2849965 36 100.0 29 .................................... TGAAAAGGGGGACGCAGGGCGGGAGAAAA 2850030 36 100.0 29 .................................... AACGTGAACGTCTGGGGGATAGAGGAACA 2850095 36 100.0 29 .................................... GTGTCCCGGGAAGTCCTGGAGGGCATGAT 2850160 36 100.0 30 .................................... TTGCCGCTTTTTTCAAGGATAAACCTTGAC 2850226 36 100.0 30 .................................... ATGGATTGACGTGACCGCTTCCGACAGTGC 2850292 36 100.0 27 .................................... GCGAACTGCTGGCATTCACTGTCTGGA 2850355 36 100.0 30 .................................... ATCGCGTGATCGGAACGTCTAATAATTTGA 2850421 36 100.0 30 .................................... ATGGCAGCACTCATCCAGGAAATGCAGCGC 2850487 36 100.0 30 .................................... GAATCGTGGTGCGAACAAGATTTCCCGGTG 2850553 36 100.0 30 .................................... GTGAACCGGAATAGGGCGGCACCCCAGGGT 2850619 36 100.0 29 .................................... AGGTGCCCGGTTCGGTGACGGCCGGGGGG 2850684 36 100.0 30 .................................... AAGCCGCCGTGCAGAGATTGCTCTTCGATC 2850750 36 100.0 29 .................................... TGTGCCGGTCACCGGTTCGCAGCCGACGA 2850815 36 100.0 30 .................................... CCGCGATCCAGGGATCTCAAAATGGGAATC 2850881 36 100.0 30 .................................... CGCGTGCCATTCGATTTGCGACAACGGATT 2850947 36 100.0 29 .................................... TACTCGTTCCACGCCGGACTGGACGTTGT 2851012 36 100.0 31 .................................... TCTGCACCCGGGCCGTGCTCAATCTGGCGGC 2851079 36 100.0 30 .................................... GCGCCGCCATGGAAGGACACGCTTTTCAAC 2851145 36 100.0 30 .................................... GCTCCCCTCTGTCGAGCTGCCACAGGCTGT 2851211 36 100.0 30 .................................... AAACCATCCGCAGCGCTCGCACCAGACAAT 2851277 36 100.0 30 .................................... CCTGCGGCTGTCCTTGTCCCTGCCCAGGCT 2851343 36 100.0 30 .................................... GCCGCTTGATGTTGGCCTTGATTGCGGCTT 2851409 36 100.0 30 .................................... CCATCAACACGGGCAAGTTCGTGGAAGTGC 2851475 36 100.0 30 .................................... AAGGCCGATTGGGATGTTGATGAGGCCCAT 2851541 36 100.0 30 .................................... AACACTCTGGGGACACAGTGACGAGACCGT 2851607 36 100.0 29 .................................... CGGTCGCATGGGCCTCCGTGGTCAGTGTC 2851672 36 100.0 31 .................................... CGAGCCCCAGCGCCGAATCCTACGACGTACT 2851739 36 100.0 29 .................................... GGGAGCACTGGACTTCGATTCGCTGTTCG 2851804 36 100.0 30 .................................... GAGGGACGATGCCCTCATCGACGTTATCGT 2851870 36 100.0 30 .................................... ACTCGTCGATTTTGTCGAGCCACGCCGCAG 2851936 36 100.0 29 .................................... AAAATACTTGTTCTTAGGAACGTCTACTC 2852001 36 100.0 29 .................................... GGCGTTTTCCTGTATCCCCCTGAAGTTTA 2852066 36 100.0 30 .................................... GAAGGGGGGAGTGAACAGGCCGGTCTGGCA 2852132 36 100.0 29 .................................... TCAGGATACTCCAGCGCTTCAGAGATCTG 2852197 36 100.0 30 .................................... CAAGGGTGAGGTCAAGGGTGAGGTCAACCC 2852263 36 100.0 30 .................................... ATCTTTTCGCCGTCACCTGCCGCGGAGAAA 2852329 36 100.0 30 .................................... AGCTGATTCTGGTGGAGGGGACGGAAATCT 2852395 36 100.0 30 .................................... AGGGGATGGGTGATGGGGAACTCCCGGGGC 2852461 36 100.0 30 .................................... CGATCTCCCCGTTTAACGGCTTCCCATGAG 2852527 36 100.0 30 .................................... AATGCCCGTGTTCAGCGCCCGCGCAACCGC 2852593 36 100.0 30 .................................... CCCGCACCTACAAGGGGAAGCACGTCTTTG 2852659 36 100.0 30 .................................... CACGGAAGGACTGACCTTTCTACTCTTTCG 2852725 36 100.0 31 .................................... TAATCCTGCGAGAAGAATTGCTCACAAAGCA 2852792 36 100.0 30 .................................... CCTTGCGAAATGACACGACTCGCCCTCTTA 2852858 36 100.0 30 .................................... TTGGCCTTTTTGGAGGAGTGGCGAAATTTT 2852924 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 81 36 100.0 30 GCTGTGGTTTGCGGGGAATCGTCGCTCGGATACACT # Left flank : ACTCCTGAAGAAGATAAGGAATTGGAGCGTATCCTCGCGAAAGCGGATCCGCTTGAGCGACGAATAGATGTTATTAACAAGATGCTCTGGGAAGGCTTAACACAAGAGGAGGCCGAGGCCGAGGTTGCCGAAGAGGAGCGAGAAGAGGAAGAAGGTGGGGACGCGGTGCTTTTCGTATGAGTGATCCAGCAAGCTGAAACTGAACTTCTCTGTTCGTGTTGCCCTCCACGAAGGCCGCCTGTGCCCCCCGTGCACAGGCGGTTCTTTTTTTCGCCCCATGAGCCTGGCGACTTCCTGGCTGCCCCCAAGGGTGGACATTGGAAGATAAAAGCACACCCCCTGATCGAGCTATTGACTCCGGTCTGCCTGTTTCTGGTATTAGTCGTGTAATCGCACAACTATAGGTGGAAAAGCATGGCGACCATTACTCTCGATAAACAACTGGATAGTGAACAAGTGCTCGATACACTCGCGCGCGTCATTACGAGAACGCATTCTAC # Right flank : TACCTGCGACCAACTTCGTTAAAAGAACACAACTTGCGACACGCCCATGCTCAAAAAAGCATGAGCTGCCGAGGTGCTTTTTCATTCTCCTGGCGAATTTTTCCCACATAGTTTTCCATTTTTCCAAATTGCCGGTCAGTAACGGGTAACAGCCGAACAGCGCCTTTCGGCGGTAGGTTCGCTCGGATCTCCTGCCGATAGGGATGCATTGCCTCTTCACTTGGAAATGGCCTGGCGTACACAGAGTACTGTAACTGACAAAACCCCATTTCCAGCAAACGTTTGCGGAAACGTGTGTACTCCCTCCTCGCCTTCCGGTCGTCCATGGGCAGATCAAACAAAACAAAAAGCCACATGATCTTGTAACCTGACGGGAGATCACCGCGAGGCATGGCAGCTCCAATCGGGCAACAGCAAGTCACGGCGTTTTTTTAAGAACACGTCCGCAAGCGAGGCGGCAATTCGACTGAGTACATCAAACAGCGTTCGTCTTTCACCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGGTTTGCGGGGAATCGTCGCTCGGATACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 2886597-2889607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2886597 30 96.7 38 .............................G GGGTTGTTTTTTTCTTGTGCGCTAGAATCGCACTCTAG 2886665 30 96.7 36 .............................G CAAGGGCGTCGCGTGCTTTCGCGATCTCGGCATCAT 2886731 30 96.7 38 .............................G TGGATGATACATATGCGCCAATGCGCAGAACGCCCACA 2886799 30 93.3 36 .......C.....................G CAAGGCAATGATGAATGTGGCGCAGGGATTGGCCAG 2886865 30 100.0 36 .............................. TTGTTGATGTAGTCATACGCATCGATAGAAAATCGT 2886931 30 100.0 37 .............................. CAAGATGCCGGAGACCTCTATAAGCAACTCATGCGCA 2886998 30 100.0 36 .............................. ACCTTCTCCAACCGCTCCAACTCATATGGAGAAAGC 2887064 30 100.0 40 .............................. GTAGTGGTTCTTAATTACATGCCTGAGGATTCGGCATTCG 2887134 30 100.0 37 .............................. GTTACAGAATCACTGTAATAATAACCTCCCGGACCCG 2887201 30 100.0 36 .............................. TAAGACGAGAAAGAGGTACTGAATAGGTACAATCCG 2887267 30 100.0 36 .............................. TGACTATTCCCTTGAATGTTTCGGTACGTTTACTGA 2887333 30 100.0 36 .............................. TTGTTAAAGTCTGAGCATCTTGCGGTATTTGACTGT 2887399 30 100.0 37 .............................. GGTTTAAAGTATCGATCGAACAAGAGCTCGTCAAAAT 2887466 30 100.0 41 .............................. TACGAGACGCGGCGGCAGCTTGCTTTCAAGTTAATGAAAGC 2887537 30 100.0 41 .............................. AATAACAAATAGGGAAGCAAAGAAGCCCAATTAAAAGATGA 2887608 30 100.0 37 .............................. TTCGCACGTGTGTTAGGGCTTTGCATTTAGCGACTCC 2887675 30 100.0 38 .............................. AAAAAGCTATCCTCTCAAAAGAAAAGCGATCAGTCAAA 2887743 30 100.0 36 .............................. ATACAACAAATTTAAAATCAGGATCTTAATTCAATA 2887809 30 100.0 38 .............................. GCTTTCGCAGCAGCTGTCTTCGACTCCTGCTCAGTCGA 2887877 30 100.0 39 .............................. GTGTCATTTGGACTTCTAGCATGCGTAATCTCTCACTTA 2887946 30 100.0 39 .............................. GTAGATGCGAATGGGATGCCTTCTCTCTTGATTCCTCCT 2888015 30 100.0 39 .............................. TGGCTTGTCTATTGTCGACGGGTGTTTCGTCCTCGCGCA 2888084 30 100.0 39 .............................. TCAGCCACTTGTAAACCTCCTCTTGTGACGGCGGAGGAA 2888153 30 100.0 37 .............................. CTGGCGCAGAAGGTGCTGAGGAGGTATGGAATAAAAA 2888220 30 100.0 38 .............................. AGGGCGCGAACATGCTCGGCGTCGAAGTGACGATTAAT 2888288 30 100.0 38 .............................. TAACGGACACTGTCAATGCCATAGTGCATAATGATGGC 2888356 30 100.0 37 .............................. TTCAATACTTTACAGCATATCTCGCATCACGTCATAC 2888423 30 100.0 38 .............................. TGGTTGATGGCGAGGGCTTCCACGGCCAGCGCAGCAGG 2888491 30 100.0 38 .............................. GGTTGATGTGATTCATGGAGGCACACAAAATGAGCAAG 2888559 30 100.0 35 .............................. GAATGATCGGTGCTGGGATAGGGGCGGGCGTCGGA 2888624 30 100.0 36 .............................. TTCCAATTGCGACATCGCGGGCGACCAAGTTTCCGC 2888690 30 100.0 41 .............................. GTAAGGATATCATCGCTGATGTCTGCGCCCATTTGCTTGAA 2888761 30 100.0 38 .............................. GCAGCTTTTTCAATATCGACGGAATGATCTCATATGCC 2888829 30 100.0 37 .............................. GAAACTCAGCGCTCAACAGAACATGGACGTCGGGCGG 2888896 30 100.0 41 .............................. TTCGATTCTGATCAGGCTTGCCGAAGCAGGTTGGGAAATGT 2888967 30 100.0 37 .............................. GAAACTCAGCGCTCAACAGAACATGGACGTCGGGCGG 2889034 30 100.0 40 .............................. GCACTTCATGGCCATAGATTCTTAAATTCCGATATGGCAT 2889104 30 100.0 37 .............................. AATGAACCTTTCATTTTTCACCTCCTTTAAAAGGAAA 2889171 30 100.0 37 .............................. CGCAGTCCCACCTATCCATCCTGAGGATGTCCTTGAC 2889238 30 100.0 34 .............................. TGGTATTCCAATGTCACGTTTGCCAACTTTATGA 2889302 30 100.0 37 .............................. CTGAACCAGGACGCTTCAGAAGGCAAAACCGCTAACT 2889369 30 100.0 40 .............................. CAATTTGATACTCTCGTGTCCATAAATAGACACCAAAACC 2889439 30 100.0 42 .............................. AGACTTCTTCTAACGGCATCGTTTCCGAAGTCGATGCCGCCA 2889511 30 100.0 37 .............................. CTATATCTGGACCGAAAGCCTCGACAGATCCCATGGC 2889578 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 45 30 99.6 38 GTCTTAATCGCACCAAGTTGGGATTGAAAC # Left flank : TCTGGTTCGTCCCCTCGTTTCCTGGGCTAACGTGGTCCAGTTGGGTTTCAGCAAGAATCGGCTGGTCAATACAGTTCACGGGGCTCTGGAGGTGTATGACCTGCCGGACCTGGTTCGCGTGCTGGGAGAAAGGGTGTCGATGGAGGACCCCCGCGATGCCCTGGGCGCGCCCTGGCCAGGACAGCTCTGAACCGCGGAGCGAGCGGCAGCGAGTATCCAGGCCTCGGCTTCCACGGAGGATGCAGAACAACACCTCCGATTGGGGGGATAGTGTCGGCCTGAGTTGACGGATTCCCTTGCCACGATTTACCGTCTGACGGGGGCACCACCACTTGGGTTGCATTTAGACCAACCATATAATGGGGCTTGACAGGATGGATTTTGATTTGTACGCTTAGTTGCAGTCGATCTCCAGGGATTTTCGCATTACCGGCGATCGACTGCAAAATGGGGTTGGGGAGAGGGCGAAAAGCCCGGAAAAAAGCGGCGTTTGGGGGAGG # Right flank : CCGTTTAAGAGCGAGTGGCGAGTAGCGAGTAGTGTTAGGACTTATCCGAAAGCCCAACAATTGGCTCGAATGCCAGCGCGGAGCTTTGGTTTTGGATGGGCTCTGAATTCCCCAGAGGACGCCTACCGGCTGAGAGATCGCCCGCCTCAACAAACTTTTCCGGGTCGGAGCTTAAGAAACACTCGACAGGACGAGCCACCGGTAGGGGCGTTTATCAATCGCTCCAAACCGCACTCACCAACTCCAAACAACGTCTCAATAGCGGCAATTCATGAATTGCCCCTACCAGTTCCCCACCCCTGTTGCAAGCTGTACACATTAGCGCGACGCCCTCGACGACGTCCGTTAAACGTCGGAGGGGCACGCTTGTCGTGCCCGCCAAAACGGAGACGAAATCGATAATCCGTCCTCGAGGAAACGGACCTGACAAGCAGGTCCCTCCATACCCGCCAACACGAAGGCCAGATTGATAATCCAGCCTGGGAAGACACGGACCTGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGCACCAAGTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 4 4630708-4633419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 4630708 30 100.0 38 .............................. TTAAATCGCCCTTTTCAAAGGTTCCAATCTTACAATCA 4630776 30 100.0 40 .............................. AAGACATCAACACATGAATGTCAGGAGGATACAAAAATAA 4630846 30 100.0 36 .............................. AGGTTTATTGTCAAGCGTGAAGGTTTATTTTTTTCC 4630912 30 100.0 40 .............................. GCTTCTTTTTGCGATTCTTTCATGCTCTCGCTGGAATCAT 4630982 30 100.0 40 .............................. CTCTCATCTGCGCGCTCCTTATGCTAGATGCCAAGTTCAC 4631052 30 100.0 41 .............................. TTTGGATGATCGAATCCGGTTTCCTGTTTCCTGTCTGCCAG 4631123 30 100.0 37 .............................. GGCCTTCACACAACTGTTTGGTAGGCATCGCAACAAC 4631190 30 100.0 36 .............................. GAGGAATAATCCCCTTTAAAGAAGGATGCTGCATCC 4631256 30 100.0 38 .............................. TTTTTTTTGCGCTCATCACGTGTCTCTTTCGCACTGTT 4631324 30 100.0 39 .............................. CGGAGCATGAGCAAATAGCCGACCCTTCCAACGTTGACA 4631393 30 100.0 40 .............................. GGAAGTGAGCCACTACCTGGTCGAGGACTTGGTTCTCGAC 4631463 30 100.0 42 .............................. TTGTAATAGCGAAAAAGCCCCCGTCTTCGCCTCCAAAACCAC 4631535 30 100.0 36 .............................. CGTGTTGCGGATATGCTAGCATTCCTGAATATGCCC 4631601 30 100.0 41 .............................. AGTTGCATTTTCACGCTCCACACGTGCGTGAAAATATCCAA 4631672 30 100.0 36 .............................. CGGGATACAGTGTGGACGGCACCGTCCGGGCACCGG 4631738 30 100.0 38 .............................. GGATTATTTGGCGCCAACTGTTTGGCGCCAAATTTTTC 4631806 30 100.0 35 .............................. ACACGAACGACATGCGAGTTGATTCGTAGCAACGT 4631871 30 100.0 37 .............................. GCAAACTGCTGAACTGGCTAGTTGTCCCTGAGCTTGA 4631938 30 100.0 39 .............................. TTGCTCTAGCTAACCACCAACACGCTGTACCTTGTACGT 4632007 30 100.0 36 .............................. AACCATCCGTCCTGTAAATTTCTCCATCAAGCTTTT 4632073 30 100.0 36 .............................. CATAGCGCTCTGTGTGATGAGCTTATAAAAAAAGTT 4632139 30 96.7 37 ....C......................... AACGATTGTTCGATATTGTGAGCAACGTCCAGGTGTG 4632206 30 100.0 37 .............................. AGTCGCCAGGCTGAACAAGGAAAAGGTGGAAGCGACT 4632273 30 100.0 40 .............................. CTCAAACTGCGATGCGCCGTCACGCAGCTTCGCGACAGCA 4632343 30 100.0 37 .............................. GCAACGTTTGGGCTGCCGCGATCCCGCCCTGAGCTGC 4632410 30 100.0 39 .............................. ATAGATTCAGCTCCTCGCACGCGAACTCGATGAGCGGCT 4632479 30 100.0 40 .............................. TTACAAGCGCCTCCCAGTCCTCGTCGTCCTTGACGAGGAA 4632549 30 100.0 37 .............................. TTAAAATAGTAATAACGGGGTTTTTTGTTTCCCACAC 4632616 30 100.0 36 .............................. CGGGGCGGCTGCGCGGGCCGGCCGCGGCCTCCGGCT 4632682 30 100.0 36 .............................. ACCGCCGACAGTACCGAATGTGGCTTCCTGGACACC 4632748 30 100.0 36 .............................. TGTTAGAAAGTTCAGTTGGCTTCCCACCGTGCTTGA 4632814 30 100.0 36 .............................. CTGCCACGGAAGCCAAGCCAAGTACATCTTCTCTGG 4632880 30 100.0 39 .............................. TTTTAAGCACGAGCACAAGCTGGGGACTGGGTGCTTGAA 4632949 30 100.0 35 .............................. CTGGAAAAGTGTATTACCACCAATGGCCTTTCCAG 4633014 30 100.0 37 .............................. TAACTGAGAAACTATCATGATAGATAAGCAACAAGAA 4633081 30 100.0 41 .............................. AGGGCCTGGCCGGGTTGGGCCTATCGCGGCCGAAGCCGCCA 4633152 30 100.0 208 .............................. GAGTTAAAAGCGAGTGGCGAGTAGCGAGTCGCGAGTAGTATTCCTGGTGTGCGTCGAACGGAGATGCGCAGCGCTCGTTAGTCGTGAGCCGTCAGATAGCTTGGAACTGAAAACAGAAAACAATCGCGTTTGCGGAGACAATCGGCGGTCTACTGAAAAACCGATTGTCCACTTTCACCACTCGCCATTCGCCATTCGCTACTCGCCA 4633390 30 80.0 0 AAACA...A..................... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 38 30 99.4 43 GTCTTAATCGAACCAAGTTGGGATTGAAAC # Left flank : GCTGGGAAGGGGAGTTCCTCCTGAGCGGCCCGCCCGAATTAATCCGCGTAGCCTACGAAGCCGGATTGGGTGAACGTAACGCCCAGGGCTTTGGGATGCTTGCCTGCCGGCAAAAAGCATTCTAAAAGCCCCCAGACCCCAGCAATTCGCCCCTTGGCGCTGCCATTCAGTAAGCGTCTCCTCCCTGACGTGGCGACACGCCGGAGTGAGCCCCTCGGCCGAAATACCGATCTGATGGTCGGGCGTACCGTTTACCGGGTACCAGCCGGCGGGTGGGCCGGACTCGGCCCCTTTTCCCCTCACACGAGGGGTGAGCCTCACCAGCCCTTTTGTTCGATGTACCGCATACCATCCACTTGTGGGGGTTGACAGGGTTTGTGTCGGTTTGTACGCTTAGTTGCAGTCGATCTCCTGGGAATTTCGCACGACCGGCGATCGACTGCAAAACAGGGGGTGGAGGGAGGGTGGAAAGCCCGGAAAACATCGGCTTTCCGGGGAGG # Right flank : CGAATAAAGGGGCGAATGGCGAATGGTGAATAGCGAATGGTAAGCATCGCGGCCGGGGACGCATAACGTCGATCAGAAGTTCATGCCCGGTGGGCGCCCGTTCTTTCTCGTCCACACTGCCGTTCCAACCCGATTCGAACTAGCCTTCCAAGTTGACGGTACGGGCAATTCATGAATTGCCCCTACTAGTGACCAGCTTCTGTGTTCGCGGCGAGACACCGCAAGCGCTAAGCTGGTGAAGGCTAAAGCCTTCACCAAAAAGCGGCGATGAATCGCCGCACTCCATGGAGTGCGGGGCTTTAGCCCCGCTTTCCGCGCGGGACTTCAGTCCCCCGGCAAAGGCAATGGATGATCCAACGTTAGTCGGCGGACCCGACAAGCGGGTCCCTCCGAGAGACCGTTCGGTGAGGCACGCTTGTCGTGCCCGGGGAATAACAATGGATAATCCAACATCATGAAGCGCACGTGACAGGCACGTCCCTCCGAGACACGGACCTGAC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGAACCAAGTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 4726677-4731827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 4726677 30 100.0 42 .............................. ATTACGTTTCCGTGCACGTTCCTTCCGAAGTGTGGAGGGCTT 4726749 30 100.0 37 .............................. CTGCGCATAAGAATCACACAACACGTTGGCATTGTTT 4726816 30 100.0 39 .............................. CTCTTCTTCTACGTGGCGATGCGCTCACGCTGATGTTCA 4726885 30 100.0 41 .............................. GAAACCGAACGCGGCTGGGAACGGAAAACATGAGACGCGAA 4726956 30 100.0 42 .............................. GAATACTGCACGGCCAGCGTGTGCAAATATGGGGGTCTGAAA 4727028 30 100.0 37 .............................. AGCTTATTTTCTTTCCTGATTATCTCTTTTTCGCTTA 4727095 30 100.0 37 .............................. TAACGTACGGCATCCCTCCTACACGATAGGCCGTGCA 4727162 30 100.0 37 .............................. CACAAATTATCTACAAACAAGAACAGCAACCGGAAGA 4727229 30 100.0 39 .............................. TGACCTTACATCACTAGTGTGGAAGTATCTCAAAGAGGA 4727298 30 100.0 37 .............................. GCGGGCGGGTCGTCGTCGGCCGGGGCGGCGGTTGGCA 4727365 30 100.0 36 .............................. CTTTGCGTTTTGATGAGCATTCTGGATGAAGTTACG 4727431 30 100.0 36 .............................. TGGATTTCGTGTACAGGACCTCTTCTCCCTTCCTGA 4727497 30 100.0 38 .............................. CCGAATCGGCGCTTCACGCGGGTGGAGCTTTGGCCACG 4727565 30 100.0 40 .............................. TGAGGTGATCTCCACCTTACACGGGTAGATGGTTCGCGCA 4727635 30 100.0 40 .............................. AAGTAGACTTCTCACATCTCGTTCCGGAGATTCTTGATCA 4727705 30 100.0 38 .............................. TCAGGATTTGCAATAACGTTGACGTGTTCATTGGAGAC 4727773 30 100.0 41 .............................. TCATTACAAATTGGATTGTTTTCATCAATATAAATATCCGA 4727844 30 100.0 39 .............................. AAGCCCTCATCGGATTTGCCCTCAAGGTGCCCTGCGAAC 4727913 30 100.0 37 .............................. GAGACTCAACCAATTGTTCTGTTGGTTGCGTTTCGAG 4727980 30 100.0 37 .............................. TTAGTACGCGGCTAGCCGGAAGCGTCTATGTCGCTCC 4728047 30 100.0 39 .............................. GTCGATATCCATGGGCCGGATGTAAGCTGGGCTCAGTAC 4728116 30 100.0 40 .............................. AGAAGTCCTGATACTCCCACTCATGCACGGGCTGTTGGAA 4728186 30 100.0 38 .............................. TACGGCGTCCGCTACAGCTCCGTAGTCAACGCTAGCTG 4728254 30 100.0 37 .............................. CGTTCGTTCAGGCTGCTGCCGCTCATCGAGCGGTGGG 4728321 30 100.0 37 .............................. TTCACCATTTCGTACTGGTCGCTCTTGTGGACCAGCT 4728388 30 100.0 39 .............................. GTCATTGTCAACGATGCGCACCGTATGGTCGAGCCATTC 4728457 30 100.0 37 .............................. GTCTGTCCGCGTCGGTTCCAGGGAGGGCAAATTCCGG 4728524 30 100.0 37 .............................. CAAATCGTTTGTCGCACAACTGAACGCTGCTATAATC 4728591 30 100.0 40 .............................. GCAAGCTGGACTTATGAAGCCCAGCGGGGCACCGGCCCTG 4728661 30 100.0 38 .............................. AGCGCAGCGTGTGATTGGACGCGTCGCCTGTCTTGGGT 4728729 30 100.0 36 .............................. CAAGCTTCAAAAGATGTTTGTTCCAGCTAATCCAAA 4728795 30 100.0 37 .............................. GTCCTCTTTCCCCGCAAAGGCGGGGAAGAAAGGAGAA 4728862 30 100.0 36 .............................. CGAAGAATGGTTCCCGGCCTGTAGGCATCTTCCCTG 4728928 30 100.0 36 .............................. CAAGCTTCAAAAGATGTTTGTTCCAGCTAATCCAAA 4728994 30 100.0 37 .............................. CCTTCTCTTCTTAAGCTTGTACGGCATTTGCACACAC 4729061 30 96.7 40 ..................C........... GGGTATGGGATTTCAACATTCGCGATTGGGTTATTTTCTC 4729131 30 100.0 38 .............................. CTGCTTACATTTACATCCTGGTTGAGTTGGTGTTCGTT 4729199 30 100.0 36 .............................. TGTCTCTTCTAATCGGTTTATCTCAACCATCACATC 4729265 30 100.0 35 .............................. CTAACTGAAGAATCCGCACAAAAGGATCAGAGGCT 4729330 30 100.0 38 .............................. CAGCGTGGGTTCCGGGCGGTGCAACACGAGCGATTTTG 4729398 30 100.0 39 .............................. TAGAGAATGCTCTGGGCATCATCACCACCCAGCTCGTTC 4729467 30 100.0 36 .............................. TCTGTCGAGAAGATATTTTGCTTTACCAACAGCCAT 4729533 30 100.0 36 .............................. AATCATTACGAGGTACGACTCGTATCGTTGGCATCG 4729599 30 100.0 36 .............................. CATCTTTGATCGAACCGGGAAAGGCTACACTCTGGA 4729665 30 100.0 37 .............................. GGTTCAGGCTGGTTCAGGAAGTTTTTCTTATCTGAGC 4729732 30 100.0 38 .............................. TGATGGCGATATACGGTCTTCCATTGTAGATTTGCATT 4729800 30 100.0 36 .............................. GAAGGTATGAAATCACGATAGAACGATCAAGATGCA 4729866 30 100.0 36 .............................. CATTTATCGACCGCTTGGTTGGGGCCGATGGGTTCG 4729932 30 100.0 38 .............................. GGTGGTCTAACTGATCGTCTTCGCGGATGGCTTTTATT 4730000 30 100.0 36 .............................. CTGTTGTTGGCGGGTAGCAGTAAAGCACATATACTT 4730066 30 100.0 36 .............................. CACAGCCCAACGCAAGCCGCGTGCCCTACGCAAAGG 4730132 30 100.0 40 .............................. GCGACTAACAGCTGAGTAAGTAGTGACTAAGTTGCGACTA 4730202 30 100.0 40 .............................. TGGCATCTGATTGGGTGTGGTTGTTAGTCGCAAGTTGTGA 4730272 30 100.0 41 .............................. CGGTCTGTCGAAGATTCCATCCGCCAGCTCGTTGAATCAGA 4730343 30 100.0 38 .............................. TCGCGGAAGGTGACGATAAGCTGCACAGTGCCATGAAG 4730411 30 100.0 39 .............................. CTGCTTCAGGTTTCGCAGAATAACCCTAAGGTACGCCTA 4730480 30 100.0 41 .............................. CTTTTCTAAGCTGCTCTTTTAACTCTTTGAGTTCATCCTTG 4730551 30 100.0 35 .............................. CGAAATTATGTTGATGTAAATGCTTTTTGTAGGTT 4730616 30 100.0 37 .............................. GCAATATCCAAGAGCCACAGCGAGATTGGCGATCGCT 4730683 30 100.0 36 .............................. TACAAAATCGATGCCGAAGTCGCACGCCTATCGCGG 4730749 30 100.0 36 .............................. GTGTCTTCGCAGAGGGGACAGACCACCGTGGGCTGT 4730815 30 100.0 38 .............................. GAGAGTTGGCGTGACGAAGAGTTACAGCGAGAGGAAGA 4730883 30 100.0 38 .............................. TATCGGGGAGTGTAACAATACACAGCGACGCGCTGGAT 4730951 30 100.0 37 .............................. AGGACAAGAACAATGGGGCGCAGAACGGTCACCTATC 4731018 30 100.0 38 .............................. CGCTTCGCCATACACCAGATTTCCGCGATCTGAGAATA 4731086 30 100.0 41 .............................. GGTTCGCAACCGGGGCGCGCGTTTTGGCCGGGTGGTGGTCA 4731157 30 100.0 35 .............................. ACAGAATGGCGTGACTATGTCAAGCGAAAGCTAGG 4731222 30 100.0 35 .............................. ATTAAGTGCTTGTTTGGGCGTGACCAGGAACTACC 4731287 30 100.0 38 .............................. GCGGTCAAGTTAAGCAGCACGTCTCCGAAGAGATAGAC 4731355 30 100.0 38 .............................. GAAGCGTGACCAGCCGCGGCATGGCGGGTGTGCCACCA 4731423 30 100.0 39 .............................. GATAGAACATCGCTGTCAAGTCATGCTGCTTGATTAAAA 4731492 30 100.0 38 .............................. TGCTAGGTAGTAGATGAAGAGAGTGGCTTCACGATCTG 4731560 30 100.0 208 .............................. AATTCAAGAGCGAGTGGCGAGTAGCGAGTTGCGAGTAGTGTTCCTGGTGCGCGTCGAACGGAGATGCGCAGCGCTTGTTAGTCGTGGGCCGTCAGATAGCTTGGAACTGAAAAGAGAAAACAATCGCGTTTGCGGAAACAATCGGCGGTGCTACTGAAAAACGGATTATCCACCTCACCACTCGCCACTCGCCATTCGCTATTCGCCA 4731798 30 83.3 0 AAACA......................... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================ ================== 74 30 99.7 40 GTCTTAATCGAACCAAGTTGGGATTGAAAC # Left flank : TGCTCGTCATGGACTTCCGCGACGCCCCCTATTCGGGGAAGGATGTGGCCCAGGCACTGGCCAAAGCGGGCATCATCGCCAATTTCAACATGGTGCCTGGCGACCCACGCAAGCCATTTATCACCAGCGGCGTCCGGCTGGGGACCCCGGCCCTCACCACCCGGGGGATGAAGGAGCCCGAAATGGACCGCATCGCTGGGTGGATCGACACGGTCTGCCGGAACCTGGAGCAGATCGAGGAGGTGGCGCCGCGGGTTCGGGCGGAGATTGCCGAGCTGTGCCGCCAGTTTCCGCCGCCGGGGATCCTCATCTGAGCTGGCCACCCCCCTTTATCTGGTCATTTTTGTATGCCACTATTGTGGGGCTTGACAGGGCTGGTTTCCTTTCGTACGCTTAGTTGCAGTCGATCTCCAGGGATTTTCGCATGACCGGCGATCGACTGCAAAACAGGGGGTGGGAGGGGGGCGGAAACCCCGGAAAATATCGGCTTTCCGGGGAGG # Right flank : CTCCCGCCGGGCGAGCAGCGAACAGCGAGTGGCTGTTGATGGCGGGTGGAACACCGAGGTTGCGACGAACTCTCAATATCGTCCGTGCATCGAGACTGGAATGAAAAAGAACAATAATCCGGCTCGCCGGAAACGACGGGCGCTGGCACTGAAAAACTGACACGTAAAGGTCGCCATTCGCTATTTGCCTAGGAGAATCGAATCACGTCGGAATCGAAAGTTCGCCCGGGACGACCCCGACCTTCCGTTAAGCTGGTCCTTTAAGCGAGTGAGCAAGAGCCCCACCACGCTGTCACAAAGTATCCACACTCGTTTCTGAGAAGCTACTTACCCGCTCTATGTGCTGCCTGGTTACCGGATCGATACGCACATGACCAGCTTTCCTCAAAGTGGTCCTGTAAGATCAATCTGGGCGATGATCATGAGTGGTCAGAGGCAGGAGGGCCGCCCGCAGACAGTCCATGGGAGGCAGATTCCTTTCTTGATGACACCTCACGCCT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGAACCAAGTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 6 4751085-4753276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018477.1 Thermogutta terrifontis strain R1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4751085 30 96.7 38 .............................G AGTTTGAAAACGTCGAACTGCGTCTTGATCGCTCTGTT 4751153 30 100.0 37 .............................. CTTCCAGAACTTTGATCATTGTATCCACTGGCATGTT 4751220 30 100.0 37 .............................. GGGACTGTGAGTCTCAAGATTTTCGCCTCCGACGTTA 4751287 30 100.0 36 .............................. CTTGAATCGCTTGCAGGCGGTCGAGCGTGTCGGGCT 4751353 30 100.0 37 .............................. GTGGGTCTCACAGCTTGGCATTCGGCATCGCCAACGC 4751420 30 100.0 37 .............................. GCTTAAAAGCGGATGTCCCCTGCGCTTTTAATTTCTA 4751487 30 100.0 38 .............................. TTATCTTATTGTCCCGCATGTACTCCACTACATTGGGA 4751555 30 100.0 38 .............................. ATCAGATAGAACTGATTGGTGGTGACGGAACAGACATG 4751623 30 100.0 37 .............................. CTCAGGAAGGCACTCTAATTCGGGAGGGGCTTCAGTG 4751690 30 100.0 36 .............................. GGGTCTCATTGCTGATGTAAACACGTTCAAGTCCTT 4751756 30 100.0 40 .............................. TCAAAAATGTTTTCGTCACAGCTCACGTACGGATTTTCGT 4751826 30 100.0 39 .............................. CGCGCTCACACGTTCGCAAAAATATGATAAGCATACGCC 4751895 30 100.0 36 .............................. GTGCGAAGTCTTTTGTTGTCTCAACCGTCCACCTGC 4751961 30 100.0 38 .............................. GAGCATACTTTACTTTCTCTCGGACTGATTCCCAGATC 4752029 30 100.0 38 .............................. TCTTCAACAAGGATGTTGAAGGGGAGAGCGACGCGGAT 4752097 30 100.0 39 .............................. TGGCGTTTAGGACTGAACCGCGGGGGGGTCCTAACGCCA 4752166 30 100.0 38 .............................. TCAATCAGTTTAGCGAGGCACTCAGCGTGACCCAGCGT 4752234 30 100.0 35 .............................. GTGATCGACGTCATAATCGGCAGGCGGTGAGAATG 4752299 30 100.0 36 .............................. TTGTGCGACGGCAATCTTTATTAACAAGTTTCACTC 4752365 30 100.0 40 .............................. CGCCATCACGGGGACCGCGTGTGGTTGTGCGTCTCAGAGA 4752435 30 100.0 35 .............................. GCGAGCATTGCGTATCGATTCTGCTACCGTGAACG 4752500 30 100.0 40 .............................. AGGATAGGTTATCCAGTTTGCAATGTCATTTAAAGTAAGA 4752570 30 100.0 36 .............................. CCTTTGAAGGCAATTGGAAGCAAATAACAAAAATCA 4752636 30 100.0 38 .............................. CGCATGACGCTCTGGAGCGGCAATTTGCATCGCTCTTT 4752704 30 100.0 37 .............................. TTAGGTGGTCCTTGATTGCGTACGCGTCCGATACAAC 4752771 30 100.0 40 .............................. AACAAATTAATACTTTCTATGTTGTATGATATACTGAAAC 4752841 30 100.0 37 .............................. CGTGATCCAGCACTGTTTTAATCACCTCGCCGAGACC 4752908 30 100.0 40 .............................. GTAATTCTTTGGTATCAAGGCGATACCAAACCTCAGGTTC 4752978 30 96.7 35 .............................T CGCATAGGGTGATTCAATTATGTCTCCGATCTTGT 4753043 30 96.7 40 .............................T TGTCGGTGTTTTTAAGCACCAATTTAAACTTGTCCGCCAG 4753113 30 96.7 37 .............................T CGTAGTCACTGGCCGAGTCTTCCCGGCCCCGTGACGG 4753180 30 96.7 37 .............................T GCCGGTGACGGTGTTTTCACTCACACAGGTGCGCTCT 4753247 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 99.5 38 GTCTTAATCGAACCAAGTTGGGATTGAAAC # Left flank : GCCTGCTTCGTCGCATCGTGTGCCATCGAGCAACATCCGCTCCCTCGGCTTCTGTTCCTTTCTGCATGCATCACGCTTTCCCGGACGACTCGGCATCCTGAAAGCATCGAGCATTTTCAAAAACTGCGACATGGTCGATGTGGCCAGGTCGGGCCCACCGTTTCGGTCGGCATCAGTTCGGTAAACCGAGTTCTGCCTCGGCTCTGCTGAACACGACTTCATCCACATGTCGCCGCACAATTCGGAACACCAACACCCCCTGCGCGGAGATTGCCGAGCTGTGCCGCCAGTTTCCGCCGCCGGGGATCCTCATCTGAGTTCGTCACCCCCATTTAGACGCGCTCCCCCCTACCACATTGCGGGGCTTGACAGGACTGGCTTTCTTTCATACGCTTAGTTGCAGTCGATCTCCAGGGATTTTCGCACGACCGGCGATCGACTGCAAAACAGGGGGTGGGAGGAGGGCGGAAAGCCCGGAAAATAGCGGCTTTTGCGGGTGG # Right flank : CTCTGTGGACATTTGGTACCAAGCCGTCTTAGCCAGGAGGGACCGGCGATCAAACCTTAAACGGCGGACCTGACAAGCACGTCCCTCCGACGTCTCCGGAGGGGCACGCTTGTCGTGCCCGGCGAAGCGGCATGGGCTATCAATCGGTGTTCATTGGACCCGACAAGCGGGTCCCTCCATATGCGGTAGGGGCAATTCGTGAATTGCCCCTACCCGCCGATCGTCCCTATGTTCGTGGGAAAACACGGCAAACGGCAAGGTGGTGAAGGCTAAAGCCTTCACCGAAAAGCGGCGATAAATCGCCGCACTCCATGGAGTGCGGGGCTTTAGCCCCGCTATCGGCGCGGGACTTCAGTCCCCGCCGAAGGCAATGGGTGATCCAACGGTGAATGACGGACCTGACGAGCAGGTCCCTCCGAGAGATGCCGCGGAGGGGCACGCTTGTCGTGCCCGGTGAAGCGGCATGGGCCATCAATCGGTCTTCATTGGACCCGACAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGAACCAAGTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA //