Array 1 2719-2159 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000564.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2718 30 100.0 34 .............................. TCGAAACCCATCGGGTTGCCGTGGTCGTGTTCGC 2654 30 100.0 33 .............................. CCGCACCGAGGCGGAGCAGGAGGCGTACGCGCT 2591 30 100.0 34 .............................. CCGCCGACGACGCGGCCGCTCTCCGCCAGAAGAT 2527 30 96.7 38 ........................G..... CCGAGGGCGGCCGGCGCGGACTTCCACCGCGCCTACGC 2459 30 100.0 41 .............................. GCGAGGAACTCACCGCCGCACTGGACCGGGTCAAGCGTCGC 2388 30 100.0 36 .............................. CTGGTGGTTGTCATCGGAATGGTCCTCTCGGATCGG 2322 30 100.0 37 .............................. GCAGAGCAGCGTCCCTACACGGCGCGGGTCGGAGGTT 2255 30 100.0 37 .............................. GAGCTGTATCCGAGTCTCGACTACGCGATGGCTGCTG 2188 30 96.7 0 ..................G........... | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 99.3 36 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Left flank : TGATCATTCGCGTTGGCACTGGAGGGCTGCTTGGAGGCTTCTGGCGCAGCCTCCTTGAGGATGTTCAGGAGTGTGCGCGCCGCACGCTGGTTGATAAAGGGCGGCTCGGCTGGAAGAAGGATGAGAAATGTCTCGTCACCACCCGTGCGTGGATGAGGGCTCTCCTCACCGATAGGTGTGGCCGGCCATGTCGACGAGAGCGGCGAGGCCTCCTGGTTCATCGGGAGGCACGAGTGGTCACGGTCGGATCGCGGACGGTTCGGGAAAGGAATTTCCCCCTCTTCTGGCCCCTTCACCGGTTTCGCCCCGTCCTGACCGCGAAGTGCCGTTGCCAGACTGCAATGGGACACAGGTCCCTTGCGCGAGAGGAGTGGCTACAGGGATCAGTTCCCGCGTTGAATGTCATGGCCGGAGCCTCAGAGCCGACTTCCCGGCTAGCTTCCCCGCAATCTTCGCTGCCGCTACTGGCGCAGCCAGATGCGCTGCGCGCCGGAACTGCT # Right flank : ACGGCCCGGTCGGGTGCCGCGACGGCCCTACCTGCCAAGATGAGATGAGACAGATGTTATGTTCCATCTAGGCTAGCGTGGGCGGGGTTGGGAGAGGTTGATCGTGGCGATGGTGGTGACGGCCGGGCGGGGTCTGGTCGATGATGGTCGGGTGAGCGAGTCCGAGTCCGCGCGGCCTGATCCGGAGGTCGAGCCGAAGGCGAAGCGGCGGACGTTCACGGCGGAGTACAAGGCGCGGATTCTGGCGGAGTATGACGCGGCCGGGCATGGTGAGAAGGGTGCGATTCTTCGCCGGGAGCGGTTGTATTCTGCGCATCTGGTGGAATGGCGTCGGGCGCGGGATCAGGGTGCGGCGGAGGCTTTGTCGAGGCCGCGGGGCCGGCCGGCGTCCGATCCACGGGACAAGGAGATCGAGCAGCTGCGGGCCCGGCTGGCCCGGCAGGAGAAGGAGCTTGAGGCGTCCCGGCGCGTGATTGATATTATGGGAAAAGCCAACGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 206-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000336.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 205 37 100.0 38 ..................................... ACGGAGGCGAGGAGGGTGAGCGCGGCCACGCGCGGGAA 130 37 100.0 38 ..................................... TCCAGTCTGCTCACCGAAGAGCAGCTCAAGCTCGCCGC 55 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 CCCGCTAGCCCCAGCCCGATCATGAGGGCATAGAAAC # Left flank : TGATGCTTATGATTTGTTACGACATCACCGACGATGCTCGCCGCGAGGACGTGGCCGCCCTACTGTCCGGCTACGGACCGCGCGTGCAACTGTCGGTCTTCGAGTGCGAGGTACCCGGTGCTGATGGGGCCCGCGAGTTGCGAGCTGCTCTCCGTCAACGGATCGACCCGCTGGTCGATCAAGTGCGGATCTACCCGATGACCCAGGCCACCTTCAGCGAGCGGTACCTCCTCGGCGCCCGCACCGTCGAGGAGCGCGCCGACTACTGGATCGTCCGTTGACGTGTCTACGTACCGGGGTGGGGTATGCTGTTGGTGGCACATGACCTGTGTGGCGCGCCGCATTCGATCACGGTCCGTGCGACACGTGAAAGTGCTGCTAGAGGAGCATATCGATCATCACTAAGGCATCGTCCATCGGACGCGTGGTCGACTATCGTGCGAGGTTCGTTCCCGATACCCCCAACCCCGCAGGTCGCCGCCATCGTGGTGCCGGTTGCC # Right flank : CACCTTGGCGGGACCCGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCTAGCCCCAGCCCGATCATGAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 43532-43988 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000558.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43532 29 100.0 32 ............................. GCGTCGGCGCAGTTGGCGGTGGCGTGATGAGT 43593 29 100.0 32 ............................. CCGAGCCGGCTTGGTGTTGCGTTTCGTTTCGT 43654 29 100.0 32 ............................. CCTCCACCAGGTCCACGCGCCGACCGTCGTCC 43715 29 100.0 32 ............................. TACAGGGCGCCTTCGCATGTGTCGTCATGCCG 43776 29 96.6 32 ..T.......................... GGCGGAGGCCGGCACTCGGGCGCCGGCTCGGG 43837 29 100.0 32 ............................. TGCCCGGCCGTCATCGCCTGCATCAGGCCACC 43898 29 100.0 33 ............................. ATCGACATCCCGCGCCCGCGGCGGGTACGTCGT 43960 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : TCGCTTCGTCGGGAAGTCGCTGGCGGAGCGGGTGGAGAATCTCAACCGACTCCTTCGGGGGTGGGCGGCGTACTTCGCCGCGGGGAACTCCTCCCGGGTGTTCTCGTCATTGGACAGCTACGTCCATCTGCGGCTTGCCATCTTCGCCAGCAACAAGCACGGCCGGTCCGGTCGGGGATGGTCCGGGCGTCACAACGCCGTCTGGCTTTCCCGGCTAGGTGTGTTCCGTCTCTCCGGAAGGACCCGGCGGGTGACCGCGCATGCCTCGCGGTGAACGGTGTCGGAGAGCCGTGTGTGGGAGAACCACATGCACGGATCGAAAGGGGGCCGCTGGCGAAGCCGACACTCGTGGCAGCACGGCGTTCACACGCCGCCGGGCGGCAAAAGTGCCCGACGGGAGCCCCGCGGGCCCCGTCCCGGCCACGAGCAAAGGACCAGCCAGCGGCCTACCTCACTCTCAGTGATCCGAGAGCTACCGATTATGACGACTGGCAGTGGTA # Right flank : GTCCTCCCGCGTGGGCGAGATGTACTGAGGTGAGCCATACGGTGTGGTCCTCCCTACTCCCGTGGATTCCGCTGGTAATGCGATCGACAGCGCGAGAGATTGGACTTGACTCGTGATGGACGGCGCCTGGTGTCGTGGTCCGTCCTCAGGGTGATGGGGTGATGCTGGGGACCAGGGGCGCGACCTTCCTCGCATGGGTCCGCATGCACTTCATGTGATGTGTCGGCGGGTCGAGTCTCGAAGGGTGTCCCGAGTGGTTCGGGTATTCCCGATCACGGCCGGGCGGCGGCGTTTCCGCGGGCGGTGGTCGCGCGGCCTGCGGGTGGCGGGGGCGCTGGTTCGGAGTCGGCTGGCCGGTCGGCGGCGCGTGGCCGTGGGAGTAGACAGCCTGGTGGGGCTGGTCAGCGGGTGTTGCTGACTCTTGATCAGGTGCTGGTGGAGTTGGGTGGGCCGGAGGGGCCGTTGCCGCGGTCGACGTGGCAGGACTGGCAGCGTAAGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1321-1888 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000560.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1321 30 100.0 40 .............................. CGCCGGTCGCCGACCTCCTGGGCGACCAGGACGGTGACGG 1391 30 100.0 37 .............................. GACAGCCCTTTACCCTCATCCTCGCGCACGAGGGTGA 1458 30 100.0 39 .............................. AGGGTGAGGGCGTAGCAGTGGTCGCAACCGGCGGAGATC 1527 30 100.0 36 .............................. CCAGGCAATGTCGAGGTGCATGGTGCCGCCACCGGG 1593 30 100.0 37 .............................. CGGGGGGCTGGGACGCCCTCGACCAGGTGCGAAAGAT 1660 30 100.0 36 .............................. TCCTGATGGCGGGGGACTGGTCGGCGGCCCGGTTGC 1726 30 100.0 34 .............................. GCGGCAGTGTCGCCAGGAAGGCCGGATCGCACAG 1790 30 100.0 39 .............................. CGCGACTGGCGCGCGCGCGCGGCGCCCCGGCCGCCGGCT 1859 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 100.0 37 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Left flank : TTTCCCATAATATCGATCACGAGCCGGGACTTCTCCAGCTCCTTCCCCAGCCGCTCTTTCTCCGCGCGCAACTCCGCAAGTTCCTTGTCGCGCGGATCCGCCGCCGGCCGGCCACGCTTGCTCACCAGCGCCGCCGCCGCACCCCTGTTCGCCGCACGACGCCACTCCGTCAGATGCGCCGCATACAGCCGCTCCCGACGCAGAATCGCGCCCTTCTCACCCGGCCCGGTCGCCGCATCATATTCCGCGAGAACCCGGACCTTATACTCCGCGGCGAACGTCCGCCGCTTCGCCCTCGGCTCGACCTCCGGATCCGGCGTCACCTCAGGATCATCCACCCGACCATCATCAGCCAGACCCCGCCCGGCCGTCAGCACCGCTACCACGATCATTTCCTCCCAACCCGCCCAACCTACCCTACAAGGGGCATACCCCCTGTCTCATCCAATCTTGGCAGGTAGGGCCAGCGCCCGCCGTCGGGCCCGCTGCCGGCACGCCGG # Right flank : CCCCAACCTTAAGGCGCAGGTCAGGGGTGGTTTGGGTGGGGGTGAAATCGGCGATCTTGCGGAGGTTCGGCGGTAGTGTAACTGTGCAGGTCAGGGCCATGATCGAGAGCTGGCGGTGGGGTCCTGGTTGCTGTGTATGGCGAGCCGCTCGCTCTCGATCAGCCTGGGGGCAGGTGTGGTGGATGCTGATGTTGTAGTGGGTGAGGCCGAGCTCGTTGTGTAGTCGGGGCGATGGGCAACGGAGGGCTTGCTCTCGAACGCGCTGCGTTGCACCCGGCGCAGGATCCTGTGGTGGGTGTAGAGCGCGTTCGGGGGGCGTTCTGCGGTGCCGTAGGCGAGGATAGCGGGGATACGGAAGTGCTGTCGAATTTTGCTTCCTCGTTTTGGTGTCAGAGACGGTTCTGGCTGCCGTACTCGATGTGCTCGAAGCCGCGGTTTCGGTAGTCGCCTTGGAGAGCGTGGTGGCGGCTCGTGCAACAAGTGGGCGGTCTGATGGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 23608-20411 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000560.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 23607 30 100.0 36 .............................. TGGGACTGGCTCCTGTCAGGGAGTGGGCCCGCCGCG 23541 30 100.0 34 .............................. TGCTCCACGGCTCGTAGTACGCCGGGTCCAGCTC 23477 30 100.0 34 .............................. GTCCACGTCACGCGCCACGACGGCGCTCGCGGTG 23413 30 100.0 34 .............................. AGGTTGCCGGGCGCGTCCGTGATCGCGGCGCCTC 23349 30 100.0 34 .............................. GCAGCGCAGGAACAGGGCCTCCCCGTCGCGCCAC 23285 30 100.0 40 .............................. CGTTGGTGCTCGTCTGGGCCGCCATCACGGACCTTGCCGC 23215 30 100.0 34 .............................. ATCACCTCGCCCTCCGGCTCTGGGTCCGGCTCTG 23151 30 100.0 36 .............................. CCGGCCCACCGCGGCGCGTGACGCGCGTCACGCCGC 23085 30 100.0 36 .............................. AGCTGCTCCAGGAGTCCGGATCGAAGCAGGGCGTCA 23019 30 100.0 35 .............................. TGAGCAGAGGTCAGGCGCTGTCGTCCGCGCCTGTC 22954 30 100.0 34 .............................. ATCGGCAAACCCAGCTCATCCACGGGGGAATCCG 22890 30 100.0 35 .............................. TCCCGCTGCTATTCGCCGCGAGGGTCGTACCTCCG 22825 30 100.0 37 .............................. CGAATCCCTGGGCCAGCAGTGCATCGACGACCTCCGC 22758 30 100.0 35 .............................. CCCGGCTCGAGGTCCCGGGGCCGTCAGCGGCGGAT 22693 30 100.0 37 .............................. CGATGTCTACCGGCACGTGGGCGTACAGCCCCGGCAC 22626 30 100.0 34 .............................. AACAGGGTGCTGTTCGTCCCGACCGCCATCTTGA 22562 30 100.0 37 .............................. CTATCGGCGTTGGCGGTGGTGCCGGCCTGGGAAACAG 22495 30 100.0 38 .............................. ATCTCCCGGACGCGTGCGTCCACGAGCGACACCTGGTC 22427 30 96.7 34 ...............C.............. TGCCGCCAGATCCGCCCCGGTCCGCTCAACGGGG 22363 30 100.0 34 .............................. TGGCCATCAGCCGGGCACGCGCCACCCTGCGGGA 22299 30 100.0 34 .............................. GGGTTCATCGAGACGTCAAGCCACCGCTCGACGA 22235 30 100.0 36 .............................. GCGCGCAGGCTCGCCGCGATGTCGTCCATCCGCCGG 22169 30 96.7 37 .....................A........ TGATGTGGCTGGCGTCGTACGGGTCCTCCACGGTGCG 22102 30 100.0 33 .............................. CCCGAGTGCCGGGAGCTGGAGAGCCGGGCGCGG 22039 30 100.0 37 .............................. CCTTCGTCAGAGCGCGGCGGGTGACCTCCCGGTCCAG 21972 30 100.0 35 .............................. TGGCGCACCCTGTGCATCGGGAACTTCCGTTCATC 21907 30 100.0 43 .............................. GGCGGCACGTCGGGTGCCTCGACCGGGTCGGCCTTGTCCTCAT 21834 30 100.0 38 .............................. CTGTAGTCCCGCGGGGGGATAGTCTCCCCTGTCGCCCG 21766 30 100.0 43 .............................. TAGCTGATCAGCCCCCGCGCGCTCAGGCCCTTGAGGCGGCGGC 21693 30 100.0 37 .............................. ATGAACAACACCACCCGCGATCAGGTGGTGCCTACCC 21626 30 100.0 37 .............................. GCCCACGGTCACGCAGCGCCACGACGCTGGGCTGCCA 21559 30 100.0 38 .............................. AGGACGGGCGCGGGCGGCGTGTCCGTGCGGGTCATGGG 21491 30 100.0 34 .............................. GTCGCCCACCGTCCGCCACCGACCTGGTGGCGAA 21427 30 100.0 34 .............................. CCGTCCTCGACGACCTGACCGTGCCGGCTCACCA 21363 30 96.7 32 ...........................G.. ATCGGGTCGGGTACCGAGCCGGCCGACTCGTG 21301 30 100.0 38 .............................. AAGTCGAAGGCGAAGGCGTCCTGTTCCGCGAAGTAGGA 21233 30 100.0 34 .............................. CCCGGCACCCCCCGAGCCGGGCGACACACCACAT 21169 30 100.0 36 .............................. CGCGCGCAGGAACACCGAGAGCATGTGCTCGAGCGA 21103 30 100.0 37 .............................. GACAGCAGCCCACACCACCGCCCCCGGAGGATGACGT 21036 30 100.0 34 .............................. TCGCCGATGTACTCCTCCCCCGGCGTCAGTTGAA 20972 30 100.0 34 .............................. TCAGGGCGATGCACAGGCCGGTGCACAGATCCAG 20908 30 100.0 40 .............................. ACGTGGAGCACGTCGATGCCGGGGTCGATGTACCAGGCGC 20838 30 100.0 34 .............................. CACTCTCGTGGCCGACCGCCGTGGCACCATTGAC 20774 30 96.7 37 .....C........................ TTGTTCACCTGCGTCTTGGGGTGCAGGACGACGCCGT 20707 30 90.0 34 C.........GC.................. GCGTGGACCTCTCGGGACATCAGCACCGTGTCGA 20643 30 96.7 41 ......A....................... CGGAGCGCCTGTTCGGGAGCGATGAGTGGCGCGGGTCGCTG 20572 30 96.7 36 .............................T GTGACCAGGCTGGCGGTCGACTCACCCGGCGTCGCG 20506 30 93.3 36 .................AT........... CCCTGCCGGTACCACCAGTGGCCGGTCTCGAGGTTC 20440 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 49 30 99.3 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : CGTCTACCACCGCACGCTCCGACGGAAGGTCTCCTACAAGGAACTGATCCACCTGGAAGCACTCAAACTCGTCCGACTCTGTCTGGAAGGCACCAGCTACACGCCTTTCCGGCCCTGGTGGTGAGCGATGTTCGTCATCCTCGTCTACGACACCGCCGCGGAACGCAACCCGAACGTCCTACGCACCTGCCGCAAGTACCTGCACTGGACCCAGCGCAGCGTCTTCGAGGGCGAACTGTCCGCCGCCCAGTACCGTTCGCTCATGGCGACCCTGCGCGACCAGCTCGACCTCACCTACGACAGCATCCGCGTCTACCGCACCCGCTCCCCCGCACTGGTCGAGACCGAGTGGCTCGGCATCCCCCTCGGCAACCAGGACTCCATCCTCTGACCACTCGATCAAGCCCCTGACCTGCACAGTTGCATTACCGCCAGACCTCCGCAAGATCGCCGTTTTCACCCCCGCCCACACCACCCCTGACCTGCGTCTTAAGGTTGGG # Right flank : CGCGACGATCACAGCGCGCCGCGTCGGCTTTGTGCCGCCAATCTTCCCCGAAGAAATATTTCAATGCGTCCATTTCTTATGCCCACACACTTTACATGTCGCCGCGACATTAGCCCGCCAAGTCAAATTAATATACGGCGCTCGGAAAGTAGCCCTCATGGTGAGGAAACGCGCGGAGTCGCCGCCACGACGGCGCGCAGCCATGCCTCCTTTCGGTCGAGCCTGGCAAATCCAGGCCCTAGCGGGTCGCCCTTACATTCGTACGTCAGACGGCACTCCATTGGCCCCAGTTTCGCAACCCATTCAAACCCCGAGGAAAGCGATAGTGTCCGCTTGTCGAAGCGGAAGTGACGGTCATGTAGGCGGACCTCCGCTCCGGACGAGGTAAGGCGACGCCAGCGCCGCCGAGGGATCCAACAGATCCGGGCCTGCGCTATTCCGCGCGTCCACTTCACACCGTTCGGGATCTTTAGGTTACTCCATTCGACATCCCGACTATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1525-242 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000330.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1524 30 96.7 34 ...........................G.. GCCGGATCCTCGGGTTCGCGGTGGCGACCAGGCG 1460 30 96.7 40 ...........................G.. ACGCCCGGCGCGCGCTGCTCGACCACCCCGGACCCGATAC 1390 29 93.3 38 .........................-.G.. ATAGGCGTCATACAGGCTGACCGCGCACGGGACGCCCG 1323 30 96.7 33 ...........................G.. CCCGTACCGGCTGTGCCCCGGCGCCACCGCCGG 1260 30 100.0 37 .............................. TTGCCTCCATCGCGTCGGCCCTCGACCTGTCACCGAC 1193 30 100.0 39 .............................. ACGCGGCGCTCCGTGACGCCCACCAGCGGGAGGTCGCCG 1124 30 100.0 40 .............................. CGGCGACCACCCGGGACCTGAGCCTGATCTGGCCGCTGTT 1054 30 100.0 35 .............................. ACCGACGCGATCGCGGTGCGCGTCACGGGTCCGGC 989 30 100.0 36 .............................. GCGCGGCCGGCGGTGGCCCGTCCCCCGGGTGGGGGT 923 30 100.0 34 .............................. CCGCCCGTCCGGAAACGGAGGTGCCCGGTAATGC 859 30 100.0 34 .............................. AGGACAGCATGATGCACCAGTACATGCCCAAGGG 795 30 100.0 34 .............................. CCCTCGGCTACGCGGCGACCGGATGGCAGAGCAT 731 30 100.0 35 .............................. GTACGCGCGCACGTGGCCGCGGCCTGGGAGGCGAG 666 30 100.0 39 .............................. CTGGCCCCTACCGCCCTCGGCATCCTGGGAGATCTCATG 597 30 100.0 34 .............................. TTGGCGGGGGGTGTGCCATCGCCGGCGGGCGGGT 533 30 100.0 34 .............................. TCCGCCGGGCAGCGGCTGACTCTCCGGAAACGGC 469 30 100.0 36 .............................. CGCAGCGGAGCGGGGAGAGCCGGACGGCATCCACTA 403 30 100.0 37 .............................. TCGGACTGTTCGAAGGGCAGGTTCTTGACGCGCTGGT 336 30 100.0 35 .............................. CTGATGGCCACGCCTACCGTGCCGCTACTCGTCAC 271 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.2 36 GTTGCGATCCCTCCAGGGATGATCAGCAAC # Left flank : GCGGGCTGTCTTGACGGCGGCCAGGACCGCGTCGAACCGATAGTTGTTGATCAATGTCTCCATGGGGTCGTCCTCCGACGGCGCCGGGGTGGTGGTCCGGCGTTGCGGCTGGTCATCGGCGCGCGTCGTGACGGTGATGTCCAGCCGTCGTAGGTCGCGAAAGACCAGTCGCGTCACGTGCCGCGTCGAGGTTCCGCCCTGGTTGATGGCGAACAGCGGCGGCATCTCGCCGAGAAGGCGGTCGACGATTCCGTGAGCGACGCGTTGCGGGTCGTCGGTCACCACCACGAGGTCCAGATCAGACCAGCAATCCAGATCGGGGGCGGGACCGGCCGCCGACCCATGAACGTGAACGTCTCGCACTCGTGGATCTCGACGGGCCAGATCATCTAGCGCAGGTAGAAGTTGCGCCTGCCAGCCGGCGGGCGGAAGGGGAACCTCGTGCACGGTTGCGTCCTCCTCGCTGGCGACCGTCTCGCTGTCGGATGTCTCCTCGAGCG # Right flank : CCCCAACCTTAAATCGCAGGTCACAGGCGATGTTAGGCAGCTCGAAAACGCCGATCTTGCAGAGGTCCGGCGGTGATGCATCTGTCCAGGTCAGAATGTTGATCGACTGGCGTATGTACGTCAATCCGGGGCGGGAGGCCGGTGCTGGGGAGCGGTTCGGCGGAACTGTAGACGATGCCCAGCGACCCCCTACCTGCCAAGCTAGGGCGAGACGGTGTGTATCTGGTATCCAATGACTAGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 1011-683 **** Predicted by CRISPRDetect 2.4 *** >NZ_OESX01000470.1 Frankia canadensis isolate FRACA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1010 37 100.0 35 ..................................... ACGAGCGGCTCGAGCCAGACCTTGCCGGCGATCGT 938 37 100.0 34 ..................................... ACCTTGGCGGGACCCGACAGCTCGGGCAACTGTG 867 37 100.0 39 ..................................... CTATTCGTTGAGCTGCTGGGCCTTCCGGAGCTCGGCCTT 791 37 94.6 35 ...........................T...G..... CGTGGAGCCACATGTAGAAATCGACGATCAGATTA 719 37 86.5 0 G......A...A...G...............G..... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 96.2 36 CCCGCTAGCCCCAGCCCGATCATGAGGGCATAGAAAC # Left flank : | # Right flank : GAGGAGGGCTGTTGGCTGTCTTTCTTGGGATTGTCTTCGTTCCGTCGGTCGGCGTTGCCCTTGGTGAGTGGGTGGGCCGGCGGGAGAAGGTTTGGAGTCGGGTGGGGTGTGGTTCTGGCGGGTGGGGAGTTGCGGGAGGCTCAGGGGGCCTTGGTGTGGAGGAACGTGGTGATGGTGGAGTAGGCGAGCTGTTCGGTGAGGGTGAGAGGTGTGCGGTGGGGGCCGGTGACCAGGTTGACCTCGGAGTCTTCGGGGCCGATCTGGGCCTCGAAGACGTGGTAGAGGAGGTGGAACCTGTTGTCGTCGGCGGGGTGGAGTCTTATCCAGAGGGGGGAGGCGCGGCGCAGTTCGTCGCCGGTGGCGGCGTGGAGGGTGAGCGTGGCGTTCTTGCTGAAGACGATGGGCAGGCCGAAGGCGCCGATGCGGGTCTCGACGGGCGGCGGCGCATCGTTCCTGAGGGCGGGGAGCACGGCGGCGCCGTATTCGCGTGTCACCCATCG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCTAGCCCCAGCCCGATCATGAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //