Array 1 559577-557574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025066.1 Halalkaliarchaeum desulfuricum strain AArc-Sl chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 559576 37 100.0 38 ..................................... AGCGTCGAGGAGTTCGGGGAGACACTGAACACGATCGA 559501 37 100.0 36 ..................................... AGAACACAGCCCGAGCACTGCACAACATCCACTGAT 559428 37 100.0 37 ..................................... ACGGATCGGTCTCGGTCCGAGCCGGGGAGCGAGTCGG 559354 37 100.0 36 ..................................... GCCGCTGATGCTCCCGCAGATCGAGGACAACAAAGA 559281 37 100.0 37 ..................................... CCTCTTGCAGCGTCCCTCGAATCCGGTTCTCAGCCGG 559207 37 100.0 36 ..................................... AACGGAAGGAACAGACCCCTGAACGGGGTTGATTGG 559134 37 100.0 35 ..................................... ACGAACTTTCGCTCGAGCACACAAACGACCCCGAA 559062 37 100.0 37 ..................................... GCTGTTCGTCGGGCCGCACGACCTCCGCCGCAGCTGG 558988 37 100.0 35 ..................................... AGCAGCCGCGCGGAAGGCACGTACCTCTGCGGGGT 558916 37 100.0 36 ..................................... ATCGTCGTCTTTGTCTCGGATAAATCCCTTGTTTTG 558843 37 100.0 36 ..................................... ATCACGGCGGCCTCGAACGCGCGGTGATGCGGACCA 558770 37 100.0 36 ..................................... TCGACGTCCGCGTCCGGCGAGAGTCGATCCCGCATA 558697 37 100.0 34 ..................................... AGTACATCGCTATTTTCCACGGGTCCGACTTGTC 558626 37 100.0 32 ..................................... CTGCGCGCTCGCTCCTGGTCTTCGTCAGTCGT 558557 37 100.0 35 ..................................... CCGCGTTTGTGTCGAGTCGTACCGTCTTAGCTAAA 558485 37 100.0 35 ..................................... CCGGCTGCTGTTGCCCGAACGAGCCGGAGGCTCGT 558413 37 100.0 34 ..................................... GTCTTTGGTGGATACGTCGGACTCTCGGTATTGA 558342 37 100.0 37 ..................................... CGATCGGCTCGACGACGACCGTCGGATCCGACGTCCC 558268 37 100.0 36 ..................................... TATCGGAGTGACGTCGTCGGCTCCGGGGAGAGTCGG 558195 37 100.0 34 ..................................... CGATAAGTCGAGTCTCCCGTTTGATCCGGGACGT 558124 37 100.0 36 ..................................... CAAAGGATCGCTCCGAGATCGTCGTCGGGTTCGTGG 558051 37 100.0 36 ..................................... ACCAGCCGCCGCCAGTGGACGCGGCAACGGCATCTT 557978 37 100.0 36 ..................................... AGCGTGTCCCGATCGAGTGGGGTGAGGTTATCCCCG 557905 37 100.0 37 ..................................... ACTAACTCCTTGAGAAACAGGCCGTTAGGGTGTGAAG 557831 37 100.0 36 ..................................... ACGTCGAGGTCGAGGTCGGCGTCTCCTCACTCGAGG 557758 37 100.0 38 ..................................... GCGGCGAGGGGTTGGACGTTCACGTCGAGAGTTCGAAC 557683 37 100.0 36 ..................................... CGTACGTCGCGACCTCCGGACCGACCAGGGAGTCGA 557610 37 94.6 0 ........G...........T................ | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.8 36 GTCGCAGCAGGGAGAAAACCCAGCACGGGATTGAAAC # Left flank : GACCTGATCGTCAACTTCGGCGGCGGCGCGCGGGAGGTGCTGCTCCCGTTCATGATCGCGGCGGTACTTTACGCTCCCAGTATCGACGGTGCCTTCCAATACACTGACGTCGATCAGGAGGTCCGGACGGTATCAATTCCACATCTCACGGCCCAGATCCCACGGAGTGCCGTTGCCACCTTCGACTTGATCGCAGAGTTCAACGAGGAAATCGCACTCCCTGAATTAGCGCGTGAAAGTGATCAGAGTAAGAGCACTGTCAGTCGCCACGTGGATGATTTGGCCGGCGTGGAAGTCGTTGATACTCGGTTCGAGAACAACACGAAGTACGTTTGTCTGTCTCAGACTGGTCGTCTGCTTCGCCGATCGGAATAGCATCAGGGAAGGACGACTTCGTGGACCTTTTTGAATGGGCGGTATAGCCCCCGTCCACGAACGAGTCATCGAAATCCACTACTGGAACAAGATTTATTGCCTCTCTAGACGGATTTTGACCCCCT # Right flank : GTGACGGCGTCGACCACCCCTTCGCAGCCTCCTCAATTGGACCGGAAAACCACTCCAAATTGCAGACTTCCAGGCTTGAAAAGTAGCCTCATTCTGTCGATTTCGAGGTGCAGGAGGAAGTGGTATGGGTTGGGGCGGATTTGAACCGCCGGCCTCCTCCATGTCAAGGAGGTGTCATAACCAGACTAGACCACCAACCCGGTCAGTCTGCGTTCGTCGCATTCACCCGTTACCCGGGTACGTAATTGAAGCTTTCGACTCGGTGCTCCGACGCCACCGTCGCCGCTGTCCATCCCGCTTGTGGCGGGCGATATCCCGGTAGGTGAACTACCCCTGCCTACTCAGCCGCTAACGCGGCTTCCTTGAGGCAGGCGCTTCCTGTTTCAACGACGCGACTTGCAGACACTGAAACAGAGTCCACAGCGGTCGCAGTCTTCACAGGCGTTGCTTCGGAGTGAACCACTCCTAGTTTCGACAATCCACGTGACTTCACGTTCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCAGGGAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 570101-572605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025066.1 Halalkaliarchaeum desulfuricum strain AArc-Sl chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 570101 37 100.0 37 ..................................... AGTGATGGATACCTATATGTTGGGGATGCTTTAGGGA 570175 37 100.0 37 ..................................... GGATCCGATCGTCGTCTCTGAGTCGATCAATCATTGT 570249 37 100.0 36 ..................................... GGCTCGACAGCTTCGATCACTCGCATCCCTCCCGAC 570322 37 100.0 37 ..................................... ATCGTTGAGGTCTTCGTCATCCGGGTCGTACTGGTGA 570396 37 100.0 36 ..................................... GGTGCTTGCGGCCGGCGCGTTCGCGGCCACCATCGC 570469 37 100.0 37 ..................................... AATGTGTGGGTTCCCGCTCTCCTGAAACTCGAGAACT 570543 37 100.0 36 ..................................... TATGCGATTTGGTGTGCTGTCTCAAAAATCGCTGGT 570616 37 100.0 35 ..................................... TCGCCGTCCGACGCATCTTCGGTGTGGTCACTGTC 570688 37 100.0 35 ..................................... TCGACCGCGTCCTCGAGGAGTCGATCGAGGTCTCT 570760 37 100.0 35 ..................................... AGCGAGTCGTCGATCGCGTCCGAGTCGATACTCGC 570832 37 100.0 33 ..................................... AAGAGCCGCGAGAGCGATCGCGAGGATCGCGAC 570902 37 100.0 39 ..................................... ATCTCGAGCTCGACCGAGTCCGTTGTTACGTCCTCGTCG 570978 37 100.0 35 ..................................... AGCTCTCTTTGCCTCCGGAGACCATCTCCCGTCTC 571050 37 100.0 36 ..................................... GTCGCAATCCTGACGTCGGTACTTCCACACTCGGGA 571123 37 100.0 35 ..................................... CCGATGGCTCAATTCCTAAAACAGTCGATCCGAAG 571195 37 100.0 35 ..................................... GATCGAGGATGTCCAAGTGACCGGACTCGGCAGCG 571267 37 100.0 35 ..................................... AATTTGACCTCCTCTCCGTCGATATCGACCGGGAC 571339 37 100.0 36 ..................................... AAAGCGAGCGTCTCCGGACCATCTCCCCGTCTCGGA 571412 37 100.0 35 ..................................... TGATCGAGGAAGTTCGAGTACACAGGCGCCCGACT 571484 37 100.0 34 ..................................... CGCGACTTCGACGCCGAGATGGAGGCCGCCGAAC 571555 37 100.0 35 ..................................... AGAGTAGCGGAAAATATTGCCGTTTGTCCACGCTG 571627 37 100.0 35 ..................................... ATCTCGATGAGTGCAAACGAATCGACGATCGACCG 571699 37 100.0 34 ..................................... ACCTGGAGATCGTCGACGGCGAGGCGTTCGAGCC 571770 37 100.0 37 ..................................... GTTTACACGGGGACTTATACTTACGGGGTCGCGACAC 571844 37 100.0 32 ..................................... TCTTCGATGTACTGCTCGTACACGTTAACCGT 571913 37 100.0 36 ..................................... CGATCATCGAGCCGTTCAATGATACGGCACCGTCAG 571986 37 100.0 36 ..................................... ATCGGCGTCCGGCGGTTCGCGTTTTTCGGGCGAACG 572059 37 100.0 34 ..................................... GCTTTGTCCTCGAGACTGGGCAGTTCACGATCGT 572130 37 100.0 37 ..................................... ACGTATCACGAGCGGATCTATTCGGAGCTGTGGGGCG 572204 37 100.0 35 ..................................... CTCCAGCCGGTCGCTTTCCGAGCTGTAAAACCGGA 572276 37 100.0 37 ..................................... AGCATGAGGCTATCACGCCGCGCGAAGATACAGAAGA 572350 37 100.0 36 ..................................... TGCTGACCTGATCGCCACGGAAGGCAACACCGGCCC 572423 37 100.0 35 ..................................... CGAGAGTGAACGATCTGCGCGTCGAGATCGCTGTC 572495 37 100.0 37 ..................................... CGATCGCGATCGGCCTCGGATGGGTTGAACCGGTCGT 572569 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 100.0 36 GTCGCAGGAGTCAGAAAACCCGAACCGGGATTGAAAC # Left flank : CCACTTCGAGTACGAGGTCAGTCGGCGGAAGGCGGTCCGGCAGCAAGCGATCCTGCTACGGAAAGCGATCACAGGTGAACTCACCGAGTATCACGCGCTCTCGTTCGATCGATGACCATGCGCCTAGCAATCGCTTACGATGTGAGTGACGATGCGAACCGCCGGCAGGTGTATCGAACCCTCCAGCGGTACGGGGCCTGGAAACAGTACAGCGTTTTCGAACTGGAAGTGAACAAAACCGAGCGCGTTGAACTGGAGGACGAACTCGAAGGGCATATCGATCCCGACGATGGGGATCGGATTCGAATCTATCGGCTGTGTGAGTCCTGTTTGGACGATGTCTCCGAACTCGGGGCCGAGACGCCAGACGAACAGTCGAACGTGGTGTGATCTTCGTCGACCTTTATGAAGTCTCTGTACGGCCCCAGTCGACGAACAAGAGGCTAATAATCACGGTGGGAGCAAGATTTATTGCCTCTCTCGGCGGATTTCGACCCCCT # Right flank : CAGATCTCCGACGAGAGCGCCCGGCGCGAGGGCGAGGTGCAGAAGTCAAAAAAAACCAGACAACACCTATTTGTGAGTAGTCGGCGATAAATGCAGTATGCGTTCTCGATTCGAAACCGCGTTCAGCCGAGCGAAGTACGCAGCGATCGGGGCGGCCGTCGGGGCGGCGCTGGGAGGCATCGTGGGCCGGAACGCGGCCAGCACCGGCGGCGCCGTCGGCGGTCTGGTCGGCGCGACGCTCGGCGAGGCCCGCGTCACGGCCGGCAGCGCCCTCTCTGGACTCCGAGAGAAAGCTACGGACCAGTCGTCCACCGCCGACTGACGCGTTTCGGCCGGCGACCGATCCCGGGCGGTTTCGGCGGTCGCCGCGTGGACAGCGTCGAACGACCGTACCGCCAGATCTTCGACGTACGTTGCTGCAGAGATAAGGTATCGGTTGCCCTCACAGCAGCAATCGCAGTACGGCCGTTTTGCTGTTTCACCCTACCGAAAGTATATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGAGTCAGAAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA //