Array 1 1901918-1899989 **** Predicted by CRISPRDetect 2.4 *** >NC_016001.1 Flavobacterium branchiophilum FL-15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 1901917 36 86.1 78 .AAT.TA............................. TTCAGATTTTTTGAAAATCAACGGTATTGAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATAGGTGTGTTTGT 1901803 36 86.1 30 .AAT.TA............................. AACATATTTTTTAATAATTACATTTTTAGT 1901737 36 97.2 30 .................A.................. GCGGGTTAGAGTAGTCTGGTAGCTCGTTGG 1901671 36 100.0 29 .................................... CATGCCAGCAGCTGCCGATACGTTGGGGT 1901606 36 100.0 30 .................................... AATACTTGCAAGTGTTTGTATATTTGCCCC 1901540 36 100.0 30 .................................... TTTAACGCTTTAATTCAAGCGATTACAAGC 1901474 36 100.0 30 .................................... CGTTTTATTGGTGCAATTGTTTTGGCCTAC 1901408 36 100.0 30 .................................... TGGGGCAACATGTACCGTAGCAGCTGGCGT 1901342 36 100.0 30 .................................... CCTAGTATTAAATTAATATCCAACGCATCC 1901276 36 100.0 29 .................................... CTCAAATAAAAGTGCCAGCAGGAGCCATA 1901211 36 100.0 30 .................................... CAAGCAAAAAGAAAATGAAATTAAGGACGA 1901145 36 100.0 30 .................................... ATTACGCCCGATGGTGTGGGCGGCACTTGG 1901079 36 100.0 30 .................................... TCGCCATGATTTTCGATGTTATTATGTATA 1901013 36 100.0 29 .................................... CATACCAGCAGCTGCCGATACGTTGGGGT 1900948 36 100.0 30 .................................... AATACTTGCAAGTGTTTGTATATTTGCCCC 1900882 36 100.0 30 .................................... GATTGTGCTAAAACATTAAGTTCGTTAAAT 1900816 36 100.0 30 .................................... ACCAAAGAAAAACTCACAAATTGTGAGAAT 1900750 36 100.0 30 .................................... TTTAACGCTTTAATTCAAGCGATTACAAGC 1900684 36 100.0 30 .................................... CGTTTTATTGGTGCAATTGTTTTGGCCTAC 1900618 36 100.0 30 .................................... GCTTGAAGTTTCCAAAATGGAGTTCAAATA 1900552 36 100.0 30 .................................... AAATCTTTTGGCTGTATCAACTGTATTAGC 1900486 36 100.0 30 .................................... TTTCCGACAAATAATAACACACCACAGGCA 1900420 36 100.0 30 .................................... TTTGGCTATCTTAGTTTCTTCATAGCCATT 1900354 36 100.0 30 .................................... ATTTCCAAATGCCATTTCAGGCAAATACAG 1900288 36 100.0 30 .................................... TTTTTCAGTTGTTAATGAAAACCCTTCAAT 1900222 36 100.0 30 .................................... AGTTTATAAAAGAATATGAAAACGGAACTA 1900156 36 100.0 30 .................................... TTTCTAATCATTATTTTTTCTTTTTAAGAA 1900090 36 100.0 30 .................................... ATAAGGGTTTGACTCTATTCTACAAACATC 1900024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 29 36 98.9 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Left flank : TGAAAATTGATAGCGGATTAAAAAGTGGTTTTGCTGTGAAGCAAACCAAAGAAGAAATGTTAGCCGAGTTCAAAGAAAGATTGAATGTACTATAGTTATTTTTTAACTCGAGAAGCAAAAGAAGATTTGTAGAGAATTTATGAATTTGGTGTTTACAAATTTGGAGCTGCTTAAGCAGATAATTATTTTACAATGTTTCATGATTGTTTTGACAAAATTGCAAGCAATCTTTATATGTTTCCGATGGTCTCAAATTATAAAAATGTAGAACGATTTTGTGTTTGTGGTGTTGATACGATTTATTACAATATCAAAGGTGATGAAATTGAAATCGTTACCATCATTGGAAGACAAAATTTTTAAAAGTTCTTTGACATACGTTTTCATGGTCTTAAACAGCCAAACCACAAAGACGATATAAGAGTAATCTGTGCATCAGTGGCAATTTTAAAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATAGGTGTGTTTGT # Right flank : AGTTGGCTTGTTGCCTTCTGATATTCAAGGGATTAATTGTAAATATCGTTATAAAAAATGCCTCTTTATAGGACTGATAACCCTATATTGAGGCATTTTTTGTTTTCTAAAACAGCTCTAGCTGTACAGGCATTGGTACTTTTGGCAACGGAGCTTGGCCCCAATAATTCATAATATTGCCAAACTGTTTGTCGGTTATCCGTACAACACTCACCTTGCCTAGTGGGGGCAACAATTGTACGATACGTTTTTCGTGTACGTCGGCACTCTCGCTACTGGCACAATGTCTTGTATATACAGAATATTGCATCATCGTAAATCCGTCGTTCAATAATTTGTTTCTAAAAACCGAGGCATCTTTACGGTTTTTTTTTGTTGCTGTGGGCAGGTCAAAAAATACAAACAACCACATTATCCGATATCCGTTGAGCTCCATAACTTGGCATATTTTATTTTTTTTGCGTTCGCCCGTATAACATTGTTGTAGCGAGCTGGCTGTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2549336-2551703 **** Predicted by CRISPRDetect 2.4 *** >NC_016001.1 Flavobacterium branchiophilum FL-15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 2549336 36 100.0 29 .................................... CCACGTAATTGATAACAAGCCATTTTATT 2549401 36 100.0 30 .................................... AGAAGGAACTCAATACAAAAAAATACATAA 2549467 36 100.0 30 .................................... TAATTTCATACGCAAAATAACCGCCTTCAT 2549533 36 100.0 30 .................................... AGTTTTGGTAGATAATATCTTTCTGTTTTT 2549599 36 100.0 30 .................................... GGTGAGGAAGGAACGATTTCATTCATAATT 2549665 36 100.0 30 .................................... CAATAGTTGATCCTCGTCATCAGCCTTGTA 2549731 36 100.0 29 .................................... TCTGCACCTACAACTTTTACTAGTTGCCT 2549796 36 97.2 29 ..............................A..... TACCTAGTGCATCGGTGTCAGTATTTTCA 2549861 36 100.0 29 .................................... CTCTAGCTCTTCCTTCAGACAAGACCTGA 2549926 36 100.0 29 .................................... CTCTAGCTCTTCCTTCAGACAAGACCTGA 2549991 36 100.0 29 .................................... TTTGTCCAGTGCTACCATAGTGGAATGTC 2550056 36 100.0 121 .................................... AAAAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACTTTGCGTGTAAAATGGTCTTTGAAATTTTGTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 2550213 35 88.9 29 .GGC...-............................ CTATTCTTGTGTTGTTACAAATTGAGCTG 2550277 36 100.0 122 .................................... AAAGAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACTTTGCGTGTAAAATGGTCTTTGAAATTTTGTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 2550435 35 88.9 30 .GGC...-............................ AATCAACCCATATATATTGGGTGTTTTAAC 2550500 36 100.0 30 .................................... ACCAATCATTTTTACTTGCCAAACAACTCC 2550566 36 100.0 29 .................................... CCAAGCCAGCAATTTGTAAATAAAATACT 2550631 36 97.2 30 ..............................A..... TTACAAACGTCGATCATGTAAGATTTCTGA 2550697 36 94.4 30 ............T..........A............ TGTACGGAAAAGACCAATACCCTGTGCACC 2550763 36 97.2 30 .........................T.......... AGGTTCTGCCAAAGTAAGAGCAGCTATAAT 2550829 36 100.0 29 .................................... GTTGTAAAATACCATTTACTGTAGCAAAT 2550894 36 97.2 30 ..........T......................... TAGTGCCATCACAATCAACCCCAAAGCTAG 2550960 36 100.0 30 .................................... TAGTGCCATCACAATCAACCCCAAAGCTAG 2551026 36 97.2 121 ..............................A..... AAAGAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACATTGCGTATAAAATGTTCTTTGAAAATTTTTTATTTTGAAAAAAATGTCTTTTACCTTTCATTGTTCCCCCTTTGGGGGTTAG 2551183 36 83.3 30 .GG.CT.A......................A..... TCTGCGTCTATAAACATTATTTGTGCTACT 2551249 36 100.0 30 .................................... TTTTCTTCTCGTATTAATTGAATTTCTTCA 2551315 36 100.0 30 .................................... TTTGGAACGTGAATATTACGTTTAAATGTG 2551381 36 97.2 29 ..............................A..... CCATTATTATTGATATATACAATGATACT 2551446 36 100.0 30 .................................... CGTTCCCCAAATAGGGTCAACTACTTTTTT 2551512 36 100.0 121 .................................... AAAAAGCCCCCCAACCCCCGAAGGGGGAGCTACCAACTTTGCGTGTAAAATGTTCTTTGAAATTTTGTATTTAGAAATAATTATCTTTTTACATTTCAATGTTCCCCCTTTGGGGGTTAGG 2551669 35 88.9 0 .GGC...-............................ | ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 31 36 97.7 42 GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Left flank : TTAAAACAATTTTCAAAAGTTTGGATAAAAGAAAATGAAAATGAAATAATTAACTACAGGAATATAGCTTGTCATTTTCATTTACCTTTATTAGAAACTTTTGATAATCTTTTATTAAATGTGGAGCAAAAATTTATCAAAGAAGAATTGCAAAACGTTTCTACTATAAACGACTTATCAAAACCTCAGGAGTATTTAATTTTATTATTCATTAAGTTTAAACATAATAATTTTTACTTGAATTTATTTAATAAAAATGAAAGTAAAACAATAAAAAACGATAAAGAAGTAAAAAAAAATAGGGTTTTGCAAAAATTTATAAACCAAGTTATTTTAAAAAAAAAATAAACTAACCACATCCAGCTCTTTGAAATCTTGAAATCTTGAAAACTACAATTAAAAAAATGACTATATTAGCACCCAACAAGAAAATATTTGCCCATTTTATTTAATAAAAATGAGCTTTACCACTTTGAAATACAAGGCATTACAACGTTACT # Right flank : CAAAAAGCCCCCAAAGAAGGAACTGCTATTATTGCGATTCAAATTTGTAATTTTTTTGCAACACCCAAATAAAAAAGCCTCTCCACTTATTGGAGAGGCTTTTTTTATGTCTGGTTCACATCTACGTTTTGGAGGTTAGGGTGCACTTTCAATATTTTGAACAGCAGTTGTTGCTATTTCTAAAAGGTCTTGTATTGCGGTGCTACTTTGTAGTGGTCGTATTTCAAATTTTATAATTTGGTCATTTCTATATACGCTTTTAATTTTACCTATAAAAAATGATCCGTTTTTCAAAAATACTAGTCAGTTTGGGGCTGTGGATTGAAAAAAAAAATCTAGTTTATCAAAAATAGTTCTCATGCCTTAATGGTGTTTTCGGTTCAAAATGACGTTGCCAACTGGCTGATATACCAAAGGAATATACTCGAGTGCCGCATCACTTTTGTCGAGTCCAAAGGCTTTCTCATATACATTGATATTGATACGCACTGCTTTATCTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-1.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTGCCCTTATTTTGAAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 3018429-3020821 **** Predicted by CRISPRDetect 2.4 *** >NC_016001.1 Flavobacterium branchiophilum FL-15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3018429 36 100.0 26 .................................... ACGATTCCGAAGAGGCAAAACAATAT 3018491 36 100.0 28 .................................... AATTCGTGGTTGATACTAAACCTGCGAG 3018555 36 100.0 28 .................................... CCAAAAAGGAGAAACCGCTTATGTCTTT 3018619 36 100.0 26 .................................... TGGCAAACCGTACGTGTCCACAAATT 3018681 36 100.0 26 .................................... AGGTCTATAATTTCATTCAGTAGTTT 3018743 36 100.0 27 .................................... TTATATCAGGTAGATCATTATTTGCAC 3018806 36 100.0 27 .................................... ATGGTAGCCAAATTGCTATTAATGGTT 3018869 36 100.0 26 .................................... TAATAGCAATATGTGGGATTATGAAT 3018931 36 100.0 27 .................................... ACAGGTGTTAAAATCACTGTATAATTT 3018994 36 100.0 27 .................................... AGCAAATGCCTTTTTATCAATAATCAT 3019057 36 100.0 26 .................................... AACCCAACCTGTTTCTTTCATTTCAA 3019119 36 100.0 27 .................................... TACCCAGTAGTCTCCCACTAAATCATA 3019182 36 100.0 27 .................................... ATTTTTAAGTCCACAAAATCAGAGGCT 3019245 36 100.0 28 .................................... TTCACAACTTTGCCACATTCTAGTGCAG 3019309 36 100.0 28 .................................... TTGCCGTCATTAAACCTTATTCCAGGTA 3019373 36 100.0 29 .................................... TTTATTTTAAATTCATGGTTCAAATGATA 3019438 36 100.0 28 .................................... TCGCATCGTATAGTTTTATTTCATTCAT 3019502 36 100.0 32 .................................... GTAATTGCGGTATTTTTGTATGCAATTTTTAA 3019570 36 100.0 29 .................................... AGTGGATGCAAAAAATAAAAAACAAATAG 3019635 36 100.0 28 .................................... GGTGGTGCAAACATTTATGAAGTAGGCA 3019699 36 100.0 27 .................................... GATATACGTAATTGTAATGACATCGAT 3019762 36 100.0 29 .................................... TAGATATACGGTTACGGTTTGTTTTTTGT 3019827 36 100.0 27 .................................... ATACTCGCAAATCTTAGTCGTTGGAGT 3019890 36 100.0 31 .................................... GATTGCGTGAGCGTGGGCGAAGTACTCAATG 3019957 36 100.0 27 .................................... TGTACAGCATATTGAAGATAGTAGAAC 3020020 36 100.0 27 .................................... ACCCTCAGCTTTGTTTCGCTGTCGGCT 3020083 36 100.0 26 .................................... TAAAACAAATCTGTGTATTTTAAAAA 3020145 36 100.0 28 .................................... TCCTGAATACTTTTCTGTTTTAAAGAAA 3020209 36 100.0 29 .................................... ACGAGAATAAAGCATTCTCATGGATTCAA 3020274 36 97.2 27 ...........................T........ ATCTTTAACACCAGCGCAGAAAAACAT 3020337 36 100.0 29 .................................... AAAGAAGTATTTACGGTCAATACTGTACA 3020402 36 100.0 29 .................................... AGGGTTGTAATTCAATACCATAACCATTT 3020467 36 100.0 27 .................................... TGTAAATTATTACCAACCGCTATCCAT 3020530 36 100.0 28 .................................... TAACGATATCACCTCTACCGAATTGGTG 3020594 36 100.0 28 .................................... GTAAACGACCGCAATCGTCTAAGGCTTC 3020658 36 100.0 29 .................................... ATTTAATGGGTTAAAAGCGTCTTTTGCTT 3020723 36 100.0 27 .................................... TTCTCGTGAAAAAAAGAAAGATGCCAC 3020786 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ================================ ================== 38 36 99.9 28 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : AGATTCTAAAAAAAATAAAATTAAATGCCATAGGATAAATGAATAGGCTTTGGCTTTAGCCAAAGACTATGACGGCATCAGCAACAACAAATTTGGTCATCGATTGCAATAATCGTTGTTTGAGATAGACAACAGCAAGCGGATTTTGAATTTGATTCAAATTGAAATTAAGACCAAATATGCCAAACGATTTGAAGAAACGGATAGCATCATGATTTTTCAGATGAGTCCGAGTTGTGTTATTACAAAATAGGATTATGCCAAGCATCAGGACGAAGATTTGGTTTTGTTTTGAAAAAAAACTTTGAATTAGAGAAAAAAAGTTATAGGTTTGCATCGGATTGCATGGTTACTATTGTAAAAAAATGCAAACCTGGGTCTTAATAATAATAATACTGACAAAAGGCATGAAAACAAGCTTTCGAATGCTGTTTTTTTATTTAAAAGCAACCAAAAACGGTAAAAAAGGGTTGTTTTTGTGTCATTTTGGCAGTGTTAGA # Right flank : AGAAAATGCCACAGATGCACAGATGTTTTTTTTTAAAACTCGAATTTATACTATGGGGTTGTGGTTTGTGGTTGATGGTTTGTGGTTGATGGTTGATGGCTGATGGTTGATGGTTGATGGTTGATGGCTGATGGTTGATGGTTGATGGTTGATGGCTGATGGTTGATGGTTGAAACCTGAAACTTGAAACTTGAAACTTCTAACTTCTAACTTCTATCCTCTAACTTCTATCCTCTAACTTGAAACCACAAACCATCAACCAAAGAGTGCCGTCAAAAGTTTGGCTATCGGAGCCATTTTTTGGCTTTTTCTTGAATGATGGCGGCTACTGTTCTGTTTTCGATTTTACTTTCGAGCCACGAAATAATGTCTAAATACAAAAAGGCTCTTTTTTCATAAGGGTGGTTTTCGTATTGCAACAATTGGGTGTGTAGTTTTTTAAACGCTGATTTGAGTTCGCTTGGGTATATTTTGTCTAAATTTTTCAAAAACTTGATCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //