Array 1 467145-468393 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZBI01000001.1 Escherichia coli strain URMC_139 NODE_1_length_587086_cov_46.748465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467145 29 100.0 32 ............................. ATTAACGGTCGCATCATCATATTGAAAAAATC 467206 29 100.0 32 ............................. TTATATAATGGCGCATTATTTTGGCGTATCTG 467267 29 100.0 32 ............................. CACATTTCGCAAGACGCATACGGAATCGCGGC 467328 29 100.0 32 ............................. GTGTACCTGCGCAAAAAATAAGCGGCGGCAAA 467389 29 100.0 32 ............................. CGTTTATTGCGGCTATTGAAGAAGAGCAGGAA 467450 29 100.0 32 ............................. GCTATCGGGTGTGGATACCGCTTTCGAGGCGT 467511 29 100.0 32 ............................. CCGAAAATACACCTAAATCAGCAGTTATCGCT 467572 29 100.0 32 ............................. GCGAAAGCCCAGCGGAGATTCATCACGTCCGC 467633 29 100.0 32 ............................. CGTTTATTGCGGCTATTGAAGAAGAGCAGGAA 467694 29 100.0 32 ............................. AAGTATTTCCGTGCACCGTGGGAGGCGTTTTG 467755 29 100.0 32 ............................. TAGTTGTGCTGATTTTTGATGGATGGTTATAA 467816 29 100.0 32 ............................. GAACTTGCTTACCTTTGCTGTGCTCGTCAGAA 467877 29 100.0 32 ............................. GGCGTTGGTGGCTGGGGCCGCCCGGTTGTTGA 467938 29 100.0 32 ............................. AAATGGCATTCGCTGTTGGAATTATGGGGTAT 467999 29 100.0 32 ............................. AGCGATTTCAACGCGGCGACGGTGGACTTAAT 468060 29 100.0 32 ............................. CCAGTAGGCGATTTGCGGGGCGTTCATGTTTT 468121 29 100.0 32 ............................. AGTCAAAATTAGCAAAACTTGATTCAAATAAC 468182 29 100.0 32 ............................. TCCGGCGAGCTGGTCACCTGGCTGAATAAATT 468243 29 100.0 32 ............................. GAAACTGAAATCGCGGTTGATAACGCTGATAT 468304 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 468365 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCACCGGGGGCACGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTGCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGGCTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //