Array 1 2317-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXG01000014.1 Halomonas sp. G11 scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2316 29 100.0 32 ............................. TTAGCTCTGTTGTGGTGCCCCCTCGCGACCCC 2255 29 100.0 32 ............................. GTCTATGTTACGCAGACCCGGACGACTTGGAT 2194 29 100.0 32 ............................. TTCCACTTGCCAATGTCTAGTCGCTTCCTGCA 2133 29 100.0 32 ............................. TGGCCGGATGAGGTAGTTGATCTTGCGTTGTG 2072 29 100.0 32 ............................. CAAAACGGCGCTGGACACCGTGGGCAAGGAGT 2011 29 100.0 32 ............................. CCTTGCGGCGGGTTTGTAGAGCCCGACACGAT 1950 29 100.0 32 ............................. CGCATTTGTCAGATTGTCGTAGTTGGCATCGA 1889 29 100.0 32 ............................. CGACGAGACAGGTGGCGCCGTTGACGTGCTTG 1828 29 100.0 32 ............................. CATTCGTGGTGTCATTGCGCGTTACCTTCTTG 1767 29 100.0 32 ............................. TGTGTCGCCTTCTGCTCAAGCGCAAAGCCCAG 1706 29 100.0 32 ............................. CCAGCTAAGGCGATGCCGACTGCCATTGACCA 1645 29 100.0 32 ............................. CAATCACGACTCGAACTCAAGCTCGAACCCAC 1584 29 100.0 32 ............................. CCTTACGTCAGTGCCAACTTCTGACGACCCCT 1523 29 100.0 32 ............................. CACCTTGCCTGATACAGCGTGATGACTTCAAC 1462 29 100.0 32 ............................. CGATTGGCGGGGATTGCGCTGGTGGCGTTGCT 1401 29 100.0 32 ............................. TTTCCACACAGCAACACAGCGAGAACTTGCAA 1340 29 100.0 32 ............................. GCACCATGAAGATGCTTGTCATCGTCAGCGTT 1279 29 100.0 32 ............................. CGGTCGTACTCTTTGCGGCTGATCGTGACTTC 1218 29 100.0 32 ............................. CGCTCTTTGCTCAGTGATATGTGACACGGCAT 1157 29 100.0 32 ............................. TGCCGCATAGGTGTCGGCACGACGGCAGGCAT 1096 29 100.0 32 ............................. CTGTTAGTCGGGCTGGCTGTTCCATTCTCTCG 1035 29 100.0 32 ............................. CCGATGGACCAGCTGACGGCAGGCGAAGTCGC 974 29 96.6 32 T............................ ATTCAGTCGTTGTCGAATGGTGGAACGTGCCC 913 29 100.0 32 ............................. TCAACGTGCGGCCATGCCAGTTGCTCGATGGC 852 29 100.0 32 ............................. CCTGCAGGCGCCCGACCTGGACCTGTTGGCCG 791 29 100.0 32 ............................. CGCATCGACAAGGACTACACGCCCTATTCACC 730 29 100.0 32 ............................. TACGGTAACGTTAACTGATGGCAATGCCACCA 669 29 100.0 32 ............................. TGGTGATACAGAGGCCGAGCATCGTCGATTCG 608 29 100.0 32 ............................. TTCAGTACGCAGGCATGAGTCGTGACCCCGCC 547 29 100.0 32 ............................. CTCACTGGCGGGCACCCATACCGGATCATCGT 486 29 100.0 32 ............................. ATGGCACTTGGTTTTACCCAGAAGATGTGATA 425 29 100.0 32 ............................. AATTGAGTGAGGCTATAGAGGGTTTTGCTGAT 364 29 100.0 32 ............................. ATAACGGATATCACGTTAATCATGGGAGATGC 303 29 100.0 32 ............................. ATAAACGAATTTGCCCGCGTCTACGTGGAGAG 242 29 96.6 32 ............................C ATTTCACGATAAATGGTGCGCAAACTGCATCC 181 29 100.0 32 ............................. CTTTCTCTCCTTTTCTTTTTTCTTCGCATTCG 120 29 100.0 32 ............................. CAGCGGAGGAGGCGTGTAAGGCGAAGCATGAA 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.8 32 CCGATCCCCGCACGGGCGGGGATGAACCG # Left flank : GGCGATATACAGCCTCCTCCGCCTGCACCCGACGCGGTGCCACCGGCTATCCCGGAGCCGCCTTCGGTGGGGGATGCTGGGCACAGGAGTGGATAAATGGCGATGCTCGTAGTGGTTACAGAAGCCGTGCCGCCGCGACTACGTGGCAGGTTGGCAGTATGGCTCTTGGAAATTAGAGCCGGTGTTTACGTTGGCGATGTAAGTCGGCGCATTCGCGAAATGATTTGGGAGCAGGTGGAAGCCCTCGCAGAAGGCGGCAACGTTGCAATGGCCTGGGCCAGCAACCATGAATCCGGCTTCGAGTTCCAAACCTATGGTGAAAATCGCCGGGAACCGGTCGATCATGACGGGTTACGTTTGGTGCGCTTTTTACCCCCACAGGTTAACTAGCTGATTTTATTGGTTCTTTAAAAACTTAATGTGGTTAAAAAGTAAGCAAAATAGCTGGTAGATTTTTTATCTGCTATTTTCTTCTTGTAGATCAAATGTCTACAACAAGT # Right flank : GCCCTTGGCGCAGGTAGATGGCGAACTCGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 116557-116346 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXG01000005.1 Halomonas sp. G11 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116556 29 100.0 32 ............................. GATCTCGTTGGTATCTACCCGCCCGCTGTTGG 116495 29 100.0 32 ............................. CGACAGCCTTTCTAAATTCAATATCGAAAAAT 116434 29 100.0 32 ............................. CAACTCTATGACCCCAACACCGGAGAAGTGGT 116373 28 72.4 0 .............TA..C..-..A..GGT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CCGATCCCCGCACGGGCGGGGATGAACCG # Left flank : ACTCAAGCGGCTAATGGGGGATGACCAAT # Right flank : AATGCTTGATCGCGTGAATAGATTCACTCCTCCGGACTCGGCTCCATAGCGCGTTTGTCATCGGGGAGGAGGACGATGTCGCCTTTGTGGAGCTTGCCGTGGCTGTCCAGGCGTTGGCCCTGGGGGCCAATGATTGCTACCACCGGGCCGATGCTGACCGCTTCGTCTTCCTGGTAGCTTTGCACGTCGACTCGAACCGAGCAGCCCTGGTAGCGGGCTGAGAGAATGTCGCCGATATGCGGTCTGGCGTCGTGGTTGGGGTCCTGGGCGTAGTGGTGCGCGACGCTGGCGCTGCCTGGCATATCCCATTCAATGTGCCGATGCATAGAAAACTCCTTCTTCGTGGTGCGTTGCAAGCGACATAGATAAATATCGTTATATTAGCGTAGCTTACTTATTCGCTACTTTCGCCCTGGTTAGGCTGCCCGACATGCTGAAACATGAAGTTAAGCGCCGCGGGCAGGCTGGCCCGCCAGACTTTCCAGGTGTGGCCGCCGGGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //