Array 1 11340-10815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTKY01000087.1 Tepidimonas taiwanensis strain VT154-175 contig354_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11339 36 100.0 34 .................................... CCAGTTGAGGACCTCGCACAGAGCTTTTTCGCTC 11269 36 100.0 35 .................................... ACGCAGCACTCGAACGACTTGAGCCACGTCAAGTC 11198 36 97.2 32 .........G.......................... GGGTCTTGAGTTTTTGGGTGTCCATGATGTGT 11130 36 100.0 36 .................................... TCCTCGGCATTCTCCAACATGCTGGCAATTGCGCCA 11058 36 94.4 35 ........................G.........G. CGGATTTTCCTGACGTACGTGATGGCGATCATGAA 10987 36 94.4 33 ..........G........................T GGGACATTGTGACGCGTTTGTGACAATGTCCCG 10918 35 91.7 34 ..........-...........G.T........... GTCGCGGTCATGGGTAGTCCGCTGTTCGTGGCGT 10849 35 77.8 0 ............G....C.G...C....CC.-..G. | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 94.4 34 GTTAGACCGAAGCCCTGAAATCAAAGGGATTGAGAC # Left flank : CGGGTGACGTGTGCCTGGATATCGAAACACCCATGCGCCTGCAGCACAACGGCAAACCCCTGTCCGCCGCGGCGCTCAGCCCGCGCGCGTTGCTGCTGGCTGCCGCGCGCCGTATTACCCTGTTGCAGGACCTCTACCTCGGCGGCAGAATCGAAGGCCTCCCGCCCGTCGAGCAACTGCTGCAAGCCATACCGGCCGTCACGGACGACCGCAGCCAACTGCGGTGGCACGACTGGACCCGGTACTCCGCGCGCCAGAAGCAGGAAATGACGCTCGGCGGGGTCGTGGGCCGGTGGCGCTTGAGCGGCAACGTTGCCGTCGCGTGGCCGTGGCTGTGGCTGTGCCAGTGGCTACACATCGGCAAGAATGCCACGATGGGGATGGGTGGGTACCGATTGGTGTCATTATGATCACTTTTGAGGAAACCTCGCCGCGCCAAGAAAAAGTTCGCACGTGCGCTGCTATGGCTTTGATTTGTAATGTGTTTTCGATGGTCCGCA # Right flank : GGCGCTGATATGGCGTCGGCGGCGAGGGGTTTGTCGGCGACGATGCCCAGTCGCGCGCTCTGCATGGGTGCGAGTTCTGTTGGCGGAAATGGCAACGTTGCCGTTTGGGACTCGCGGTGCTGGTGGCGGTATATTGGTTGCGTCATTCGATGTTCTGCGGTGAGTTCGCCATGACGCAGCGATCCCTGTATCTGTTCTGTTACGACGTTTCGTGCTCGCGTCGGCGGCGGCGGGTGCAACGGTTGTTGGCGACGTATCGGGTCGAAGGGCAGAAGTCGGTTTTTGAGTGCCTGATGACGTTGGCGGAGGTGGCTGACACCGTTGAGCAGTTGCGTCGTTTGATTGATCCGCAGACCGATCGCGTGCATGTGATTGGGCTGGATCCGCGCCTGCCGCGCGAGGGACTGGGCCGAGGCCAGCCGTGGCAGGGTGGCCCCCACGTGGTGGCGTAGTGGAGGTGTGCGATGACAACGCTGTATGTGGACCGCAAGGGCGTGCAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGACCGAAGCCCTGAAATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 72523-70055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTKY01000016.1 Tepidimonas taiwanensis strain VT154-175 contig194_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72522 28 100.0 33 ............................ CTCGACGGTCGCCCGCGAGTTCGAGATCGCCCT 72461 28 100.0 33 ............................ CAATTCGCATTTTCAACAATCCTCGTCTTTAAC 72400 28 100.0 33 ............................ TGTCCACGAGGACAGATACCCCGCGACGCCCCA 72339 28 100.0 33 ............................ CTTACTTTGGTGTTCGTACTGAGTTTGACGAAG 72278 28 100.0 33 ............................ TCTGACACATGGTCCGCGTGCGGTATATCGCGC 72217 28 100.0 33 ............................ GTAAGAATAGGCCACGATGCGCATGTCAGTCGT 72156 28 100.0 33 ............................ CGTCCGTGTAGTTGCCGACCTTTATACCGAGGC 72095 28 100.0 33 ............................ AGAAACAGGCCCGCCCCTTTCGAAAACATACAC 72034 28 100.0 33 ............................ TCCCGACGGAACGGCATCGTGATGTGGAAGATT 71973 28 100.0 33 ............................ CATCGTGTAGCGTCGGTCACGATTGAACTGCCG 71912 28 100.0 33 ............................ CGCCCCTTGATGGGTGCAGCTCGACCACTTCGA 71851 28 100.0 33 ............................ ACTGGGCGCTGGTCGGGTTGGGCATACAACTGT 71790 28 100.0 33 ............................ CAGAGTCCATACCGGTCTCGTTAAAGACCTGAA 71729 28 100.0 33 ............................ CTCTTCGCGTCGGTAAACGGGCGACATGTAGCC 71668 28 100.0 33 ............................ TTGGTTAAAGACGAGGATTGTTGAGGCGGAAAT 71607 28 100.0 33 ............................ CAGCCGCCGCCCATCCGCGAGCGGCTCAGCTTC 71546 28 100.0 33 ............................ CGTTCGGCTGCGGCGCCGCCGACGCACGAGCCG 71485 28 100.0 33 ............................ CGGCCGCCATTCTTGGCCAGCGCTTGCGTGTAT 71424 28 100.0 33 ............................ CCGGTAGGTTACCATCGCCGCCACCCATACGGC 71363 28 96.4 33 .........................C.. CCCTGAACGTACGCTTACCCTTGCCCCAGGCTT 71302 28 100.0 33 ............................ CGGGCGAGATACTGGAACCCCTCTATGCCGCGC 71241 28 100.0 33 ............................ CCGGTCGGGCGATGGCCTCCGAGTGCCTCTTGT 71180 28 100.0 33 ............................ GCGGTATATACCGCACGCGGGCCATGCGCCAAA 71119 28 100.0 33 ............................ TGATCCTCATCGCGTTGTTTTGGGCGCTGAAAT 71058 28 96.4 33 ..C......................... GACCTCGGCCACGCCGTCAGCGCCGAAGTGCGC 70997 28 96.4 33 ..C......................... CCGTCTGGCCTTTTCGTTGCTGGCCTCAACCCA 70936 28 96.4 33 ..C......................... CCGGAAGACCATAACGACGGATGAGGTTTTTCA 70875 28 92.9 33 ..C.........C............... GCTGCACGGCCTAGAGTGTCCCGTCGGGTATCG 70814 28 92.9 33 ..C.........C............... ATAGTCCGCCACTTCTGTGAGCACGCCCTCATA 70753 28 92.9 33 ..C.........C............... AATCCGTGAACACCCCACGGGCGCTGATCTTGT 70692 28 92.9 33 ..C.........C............... GTACCGTTGTTTGGTGTCGTTCATGGTGTCCTC 70631 28 92.9 33 ..C.........C............... CGCCTCTGTCACCGTCTCCGACGCCGAAAAGGC 70570 28 92.9 33 ..C.........C............... TGTGCCGTGGCGACCAATCATGAGCACCACGCC 70509 28 89.3 33 ..C.........C............C.. CGACCCCGACAACCTGCAGCCGCTCTGCCGCGA 70448 28 92.9 33 ..C.........C............... CGACCCGAGAGCGAAGCCCTACCGTTTCGAGCG 70387 28 92.9 33 ..C.........C............... TTGAACCCGAGCCACGCGACAAGAAACGAAAAA 70326 28 92.9 33 ..C.........C............... CCGTAGCCAGCTGCAGCGTCACCCGAGCGGCGA 70265 28 92.9 33 ..C.........C............... TGATTGCCGCCGGCGAGTACCGCTACATCTCCC 70204 28 92.9 33 ..C.........C............... CACGCCCGCCGGCCGTAACAGCGAAAAGCCCGT 70143 28 92.9 33 ..C.........C............... CGCGACTGGCGGCGTATCGCGGTCACAGAGGCG 70082 28 89.3 0 ..C.........C.C............. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 97.0 33 GGTTCCCCCGCGTATGCGGGGATTGACC # Left flank : GGCGTTTGGTGCCGTGCAAGCGATCCAACAGCGCAAGTCCGACCTGACCGTCGAGCGCGAAGTCCGGCGGCGAGCGGTGCAGGCCTTTCGGCGGGAAAAACTCATCCCCCGCATGATCGAACGTATCAAGGAGCTGTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTCTCGGCGCGGGTGCGGGGGTTTTTGGCGTCTGTGATGCTCGAGCTTGCCCCCGGGGTCTACGCTGGGCTTCGAATCTCGCCCGCGGTTCGAAGCCGGGTTTGGCAAGTCCTTGAACAATGGTTCACACACGAGTCACAAGCCTCCATCATCATGCTTTGGCCCGATAAAGAAATACCAGGCGGACTGGAGGTCAACACCCTGGGCACACCGCCGGTCAAGCTGGCCGACGTCAACGGTATCCTGCTGAGCCAGCGTCCGATCCGTCACACGGAGGAGTAAGCGCGAAAGTGACGTTTTATGTTCTTTAACAATGGGTTAGAATAAAGA # Right flank : CAACCATCGCGCGGGCCGGCGGCATCAGCGCCGGAGCTCCCCTCCCGCGAGGGATCAGCCCGCATGAGCGGCTTGCGCCAGCACCTTTGCCGCCCATTGGTTGAGACTTGTGCCCGCTGCTTGCGCCGCCACCAGCGCGGCGCTGTGCACTTCGGGCGGGACGCGCAGCATCAGGCGGCCAGAGGCCGGCTTCTCCGGCTTTTTGCCGAGCTTTGCGCAGGTCTCCAGGTAGTCATCGACGGCTTCCTCAAAAGCGGTGCGCAGGTCGGCCACGTTGTCTGCGTGGAAGCTCACGATGTCCTGGATGCCCAGCAGCCGCCCCACCAGGATGTTGTCGCGGTCGTCAAATTCGATGCGGGCGGTATAGCCCTTGTAGGTCATGGTGTTCATGGCTTGACTCCGATCCGTTCGAGAAAGGTGCGTGCATCCTCCACCTGATACGGCTTGGCTTCCTTCGCCGGGTGCGGGCGGTGGAAGGTGGCGACCTTGTCTCCGAAGGC # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTATGCGGGGATTGACC # Alternate repeat : GGCTCCCCCGCGCATGCGGGGATTGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //