Array 1 106743-108053 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JABMLN010000007.1 Salmonella enterica subsp. enterica serovar Cannstatt strain 130-20 130-20_contig_7, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
106743 29 100.0 32 ............................. CAATGCAGCAATAAACACACAAAACAAAAACA
106804 29 100.0 33 ............................. CATTATCGGGCGCCTGTACGGCGTCATTACTGC
106866 29 100.0 32 ............................. AGTTGGTTATGCCTGACACGTCCTGCAAATTC
106927 29 100.0 32 ............................. AATGAGCGCCAGTTTTAAAGTCGCGGGGTCCG
106988 29 100.0 32 ............................. CTATTTTTGAGTCAGTGGTCGAAAACGAAAAT
107049 29 100.0 33 ............................. AATACGCGTCAGACTTTATCGATTTTTTACGGC
107111 29 100.0 32 ............................. GCGCAGGTGGGCGAGCACGTCGCGGGGTTCGG
107172 29 100.0 32 ............................. GTGAATACGTGGTTATTTATACTGATACTAAT
107233 29 100.0 32 ............................. TCACGGGGTCTGACGCGGATGTAATGAGTTAT
107294 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTGGT
107355 29 100.0 32 ............................. GGGGATGCGTTAATAGCAGTAAAGCAGCCATA
107416 29 100.0 32 ............................. TTGGTATTGTGAACATGACAATACAGGCATCC
107477 29 100.0 32 ............................. CTAACTGGTATGCTACGAAGGCGTCTTTATGG
107538 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG
107599 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA
107660 29 100.0 32 ............................. CAACGGCGGATTAGACGCCCCACAGAGTAACA
107721 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT
107782 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT
107843 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC
107904 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA
107965 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
108026 28 86.2 0 .........A..T..........-.G... |
========== ====== ====== ====== ============================= ================================= ==================
22 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTG
# Questionable array : NO Score: 6.21
# Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 124213-125926 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JABMLN010000007.1 Salmonella enterica subsp. enterica serovar Cannstatt strain 130-20 130-20_contig_7, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================================================= ==================
124213 29 100.0 32 ............................. CCTGAGCATGTGACGGCTGCGCAGCTCAAGCG
124274 29 100.0 32 ............................. GATCAGGAGCAATTAGCGGGTCTGGGGTTAGT
124335 29 100.0 32 ............................. TTAGTTTGTACAAGCGAAGCCTTAGCCACGGC
124396 29 100.0 32 ............................. CGAGCTAAAGAAATCGCACTTGATGAAATCGT
124457 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC
124518 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC
124579 29 96.6 32 ............T................ GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA
124640 29 100.0 33 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGGG
124702 29 96.6 32 .G........................... CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA
124763 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC
124825 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA
124886 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC
124947 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT
125008 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG
125069 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG
125130 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC
125192 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA
125253 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT
125314 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG
125375 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA
125436 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA
125497 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC
125558 29 100.0 65 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAACGTGTTCCCCCAAGGTTCAAAAATTCAATATGAG
125652 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA
125713 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG
125774 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC
125836 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
125897 29 96.6 0 A............................ | A [125923]
========== ====== ====== ====== ============================= ================================================================= ==================
28 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//