Array 1 17768-16031 **** Predicted by CRISPRDetect 2.4 *** >NZ_WARA01000001.1 Klebsiella pneumoniae strain 46748 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17767 28 100.0 33 ............................ TGACAAGTGATGGGTTCCCAGGGATTATTATAT 17706 28 100.0 33 ............................ TGATGATCGCTTTGCGGGCCATTCCACGCTTGA 17645 28 100.0 33 ............................ TATGGCCGCTGAAGCAAGGAGAAAGGCGGAGGT 17584 28 100.0 33 ............................ CCTCATGCTCAAACATGGCGTGGAGGCTGGTGA 17523 28 100.0 34 ............................ CAAGTGACGACGGAGGCTCTGTTATGGATGACGG 17461 28 100.0 33 ............................ CCGTCTCATGTACTCACGCCGTGGAATGGAGAT 17400 28 100.0 33 ............................ TATAGTTCTTACAGCGGCGCCCAAAGTGTCCGG 17339 28 100.0 33 ............................ CTGAAGCAGTGTGCTTGACTTGCTCATTTCGCC 17278 28 100.0 33 ............................ CGTTATTGATGCCGCCGTTGAGGAAGCGAAAGC 17217 28 100.0 33 ............................ TATCCACCAAGCCAAAGATTGTGGCTCGATGAA 17156 28 100.0 33 ............................ TTCATAGAGAAAAACCTGCGCGAAAAATTTCCG 17095 28 100.0 33 ............................ CAGACGCATTCTGATATTCCGTCCAGAATGTGT 17034 28 100.0 33 ............................ TGAGGATGTAGCGCGTCTGAATGAGGCAATTGA 16973 28 100.0 33 ............................ TTATTATTATGATTTCTCCGCCTACCGCGCATC 16912 28 100.0 33 ............................ CAAAGTTACGTTGAGAGGTGAGTGATGAAATAC 16851 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 16790 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 16729 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 16668 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 16607 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 16546 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 16485 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 16424 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 16363 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 16302 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 16241 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 16180 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 16119 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 16058 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 29 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27221-26521 **** Predicted by CRISPRDetect 2.4 *** >NZ_WARA01000001.1 Klebsiella pneumoniae strain 46748 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27220 28 96.4 33 .............A.............. TATCAATGCTTACGTTTCGTGGTTTGAGGATGA 27159 28 96.4 33 .............A.............. CACTGGCTCGGTTTGTCATGCCAGTCTGCTTGC 27098 28 96.4 33 .............A.............. CCATCTACCAGCACGCCGAAGCTGTTTAGCTGG 27037 28 96.4 33 .............A.............. CGTCGCGCACCATCTTATTGACGCGACCCACTG 26976 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 26915 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 26854 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 26793 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 26732 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 26671 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [26662] 26609 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 26548 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //