Array 1 1560208-1559936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018191.1 Granulibacter bethesdensis strain NIH9.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1560207 28 100.0 33 ............................ GTGTGCCAGAAAATGTGCCACTCTGGTCCCGGC 1560146 28 100.0 33 ............................ CGAGACGCCGATCACGCCGCGAGAGGTAGTCCA 1560085 28 100.0 33 ............................ CTGGCCCAGCACGTACACGTCAGAAAATGCGTT 1560024 28 100.0 33 ............................ ACAGTGGACGAAAGTATCTTTATGTATCATCCG 1559963 28 89.3 0 ...........A...A...........T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : GGTACCCCGGCTTCCTTACGGGAAACACCAAGGCGATCCTTCCAAACAAAGGTCGGCGTTCCACGCATCTGGATCGCGTGGGCAGCAGCCAGGTTTAAGGTCAGCGCGGCTTGTGCCGTGTCGTTTGGTGTATGGTCAGGTTCGGCATGCCCGAGATTGCTGATCCGCCGCCAGGTATCGCCCATCTCGGCCGCTGAGGCTGAAAGCAGTTCCAAGGCTGCAAGCGTAGATGCTCCGCCATTTTCATGATCATTGATCGAAATCGGCACCAGGGCGAGCTGAATACGCCCCTCTTCTATGGCAGCCCGCAAGGTGCTGAAGGCGCGGGTGGAGAAAGGGCATAGTGGATCGATCACCATATAGACACGCGCTGCGCCCTGCCGGCCCACAAGCCCATAATGTGCTGATGCCAAGCGCAGCACCGGATCAACCATACTGACTTGCTCACCGGCCTTCAGGCCGGTGAGCAAGTCAGGATCTGCCCGGGTATCCGAGCAAGA # Right flank : GACGTAGGTGTTCTGAATTCAGAACACCCGGTGCCTGTAGCTTCCCCAGCATATACGTGAAGAGCGTAACCTCCCCCCTTTTACACGGGGATGGACCGATCTGCCTGCATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCACTATTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGCTCTCCGCTCGTGCCGCGTAACGATCCCACCCTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGGCAGGAAAGGCGGCCTTACAGCCGTGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACCTTCTTTGAAATGCTGGGGAATTTCTCCTTCGGCGATTATTTCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 1566108-1565714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018191.1 Granulibacter bethesdensis strain NIH9.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1566107 28 100.0 33 ............................ CGCGCATTGACCGGCTCACGACAGCCGAGGTCG 1566046 28 100.0 33 ............................ TCGCCGATTTTGTTGCGACGCCTCAGCAGGCGG 1565985 28 100.0 33 ............................ CTAACAATCGCCGCAACAACCTCCGGCATGGTC 1565924 28 100.0 33 ............................ TTTTCGTCACGATGATTTCGCTATCTGTTTCCT 1565863 28 100.0 33 ............................ GCCCGGATTTTGTATCCCGCGTCGCCACATCCT 1565802 28 100.0 33 ............................ CTATAAGGGCCGCAATGACCGCGTTGCGCTCGA 1565741 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCATCTCCGCTGGATCGGATAGATGAGGAACTGGTTGAGGTAGCGCGGGGGGTGATGCGGGAGCATTACCGCCCGTTATGGCATACGGTGGCGGCGGCGTTGCGGGATGCAAATGGCCGCATATGGACCGGCCTTCATCTTGGCGCGACGGTAGGACGCCTGCAGATTTGTGCCGAAGCCATCGCATTGGGGCGCGCCAAACTGGAAGGTGGCAGCGAGATCAAAACAGCCGTCGCGGTTCGTCATCCCAAACCGGATGAGATCGATCAGGACATTGACGTTGTCTCTCCCTGCGGCGCGTGTCGAGAGATGTTCGCGGATTTTACCCCTTCCACCATGATTATTGTTTCGGATGGGCAGGGACTGATCAAGGTGCCGCTTTCATTTCTCCTTCCTCTTCCTTACCGACGTTGAAAAAGGCGGCTTGCATTTTCCTCAAAATGTGAACAATTTGGATTGTTCTTTGAAATCAATAACATCAGGTCTAGA # Right flank : TGACCCGTTTTTCAGGCCCGCAAGCTCCGGCGTTGAGGCCGGAGATAGGGCGGTTAGCTGTCTCAATCTGGTGTTCGCTGCTGCTCGATATACTGCCGGATGATAGAAAGCGGCGCGCCACCACAGGACGCTGCAAAATAGCTTGGAGACCAGAGCACGCCACGCCAGTAGCGGCGGACAAGCGCGGGATGCATCTGCCTCAACCTTCGGCTTGAAACACCCTTGAGGCTGTTCACGAGAACAGACAAAGCCACCTTGGGCGGATAGTGCACGAGGAGATGCACGTGATCATCCTCCCCGTCGAATTCCACCAGATGGGTTTCGAAGTCTGTGCAGACCTTCTCGAAGACAGTCTGCATATCTTTCAGGATCGCGGCAGTGAAGACATGGCGGCGATATTTTGTCACGAAGACCAAGTGGACATGAAGCGTAAAAACACAGTGCCTGCCTCGTCTGTAATCATTGTTATTCCCCATAGGCCAATGCTATACTTTCCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1834737-1833672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018191.1 Granulibacter bethesdensis strain NIH9.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1834736 28 100.0 33 ............................ GTTGCTATAGAGTCAGATTGTAATAGCTTTGCA 1834675 28 100.0 33 ............................ TGACGTATTCACATCTTTTCCGGGCTTCTCATG 1834614 28 96.4 33 .........................G.. CCAGGCACATCAGGAGGCAGCGCGCTTCCCGTG 1834553 28 100.0 33 ............................ CTTGGCGCTGGGGTATCTTAGGCTGGCTAAACG 1834492 28 100.0 33 ............................ CCTCTCGTCGCTATCGCCGTTCGAGCGGCACGT 1834431 28 100.0 33 ............................ CTCGCGGCCGTGCAAAAAAAACATCTGACGGGC 1834370 28 100.0 33 ............................ TTGGCTCGGCTCCAGCATGTTTTCCACAACGCG 1834309 28 100.0 33 ............................ CGCCAGGCGAGCCATCTGGCTGAATGTGAGGCA 1834248 28 100.0 33 ............................ TGTTTTTGGACCTGAGCGGCATGCGTGATCTGG 1834187 28 100.0 33 ............................ CAGCGCCCGGAGCAGGAAGAGCCTGCGCGAACT 1834126 28 100.0 33 ............................ ATAAAGGGGGAGACGACCACTATCAGCCTCCCC 1834065 28 100.0 33 ............................ TCGCCGCAGACTCACTAGAGGAGGCGAACGCGG 1834004 28 100.0 33 ............................ TGCTGTGCCGGTGGTGCGCTGGGCCTGCGCTGC 1833943 28 100.0 33 ............................ CTGCAAAAAAGCCTCGTTCGCTTCCTCTAGTGA 1833882 28 100.0 33 ............................ GGGAGACGCGGGTACGATGCAAGCAATTGTTCT 1833821 28 100.0 33 ............................ CCCCGCCGAGGATCGGCGAGATGCGATAAACAG 1833760 28 100.0 33 ............................ CGACACGTACGTGTCGGCCGGGGCCAGCCGGGA 1833699 28 92.9 0 .........................T.T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CAGACATGGCAGTTGCCGCGTCTGGATTGATATTTGAAGAGGAATCCTTTTTCGGCAAGATTTTCAAAGATATCCGGGAGATAAAAGGTCTTTCTGCACAAAATCGATTTTTGTATCAGGATGATGAAACAGATTATTCAGCATCTCCTTGTGCAGCCTGCTCTTCATGGAATCTATCGGGATTTTGATTCCATAATGATCGCCAGCATGGCGCTGGATGTTTCGTCAACGCCGCGTAACATATAGAGGGCTCAGTCTTCTCATGCCCCTTCTCATCCTGCACCAGTTGCAGAAGACGATCATATGCGTTTTTAATTCTGCATGGAGAAGCGGGACAGAGACAGGATCGGTCTATCGACCATCCCTGTTCTTGTTCCGATTATGATGCTCCGAAGGAAAGTATCAAGGCCGACGGAGTGCTGCTGGTTCAGATAAAGTTAATCTCTGAAACATGACGTTCTTTGATATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : GATACATTATATAGAAGCCCTACTCTCCCGCCGGGGCTGTGCAAACCGCCCCCCGGCCTGATACACCCCGGTGCATGGATGCACGCCCGCTCAATCAGGTAACGGATCAGTCGCCACCCTCACCCTCTCCTTCAAAGCGGCGGGGTAAGGTAGGGCGCAAGATCAACGTGGAGTTGGAGCCAACCGCGCTCGCCATGATGAGGCGGTTGTGGCGGGAACATATCGCGCATCATCGTGTTCGCATGCTGGTGGTGATTCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTACCCGGTGGTGATCCAGCATGCGATCGATCTGTTCAATGCCCGTGACCGGCGCATTCTGTATCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGTGCTGCGATGTATGGGCAGACCGTCTCCATGCAGCAACTGGTGCTGATCGTGATCAGGGAGTTGCAGGAGCGCATGTTCAGTCACCTCGCCCATGCCGATCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 1928916-1930041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018191.1 Granulibacter bethesdensis strain NIH9.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1928916 28 100.0 33 ............................ CCGTGTCAACAGCCGGTGCCCGGTCGAGATTAT 1928977 28 100.0 33 ............................ CCTGTTCAGCCGGGAGACAGCATTGCCGCGCAG 1929038 28 100.0 33 ............................ ATAAAGGGCGAGACGACGACAATCAGCCTCCCC 1929099 28 100.0 33 ............................ CTCGTCGATTTCAAACACCGTGAAGGCGGAAAA 1929160 28 100.0 33 ............................ TTACCTGACCTCGATGCTCAACACCTATCTAGC 1929221 28 100.0 33 ............................ CAGGTCCGCGAGGTTCAGGGTATGGACGAGAGG 1929282 28 100.0 33 ............................ CCAGCCAGCTGGTGGTGGTGATCGGTGGCACGA 1929343 28 100.0 33 ............................ TTTTCCCCTTCATCTCCGGCGCTCCTTCAGCAT 1929404 28 100.0 33 ............................ GTGGCGCGTGAATATCAACCATTTTGGGCGTCC 1929465 28 100.0 33 ............................ CTCGTCCAGCATCATCAGCAGGCGGTGCTTGTG 1929526 28 100.0 33 ............................ CCAGTCGTAATACCGCCAGAGCTTGTATGATCC 1929587 28 100.0 33 ............................ CGCCACTGGAGCCCCCTGATGCTCCGGTCCCGA 1929648 28 100.0 33 ............................ CCAGTGGCGCGGTACGGTCACGCCGTTGATCAG 1929709 28 100.0 33 ............................ GTGATGAGCCCAGCCGGGAAGACGGGGGGACTA 1929770 28 100.0 33 ............................ TGCTATAAACCAAAAATTGTCTGCTTAATGCTG 1929831 28 100.0 33 ............................ CAGGTTCGCCAGCGTGGCCGCACTGGCGAAGCT 1929892 28 100.0 33 ............................ GTGGGGCGCATCCTCGCTATGCACGCCTCATCA 1929953 28 100.0 33 ............................ CCGTTAACCCGGTGCTGCTGGATGGCAGCGTGT 1930014 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TGGTCATGAGAATATCGAACGTCTCACCCGACGCCAGACCGGACGCGCTCTGGCGGAACGCTCCGTCATTCCGAAAATGATCGAGCGACTGAAACAGCTTTTCGAAAAAGAGGCAGAGGCCATCCCATTTCTTGAGGATGATGAGTGATGCCAGCCACTCTGGTCATTACAAGGGATGTGGAAGCGCGATATCGCGGTTATCTTACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTTTCTCCACAACTATCCTCAGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCAGAATGGTATTCCGAACTGCGCCGTGGCGCCATCGTGCTGGCGTGGCCTGATGCCAAATCCCCCGGAGGCATGGCAATTCGCACCCTTGGCGACGCCCCCAAGGAGATTATCGATGCCGATGGGGTGTTGCTTGTGCGGAAAAGTTAACCTTCGAAACATACCGTTCTTTGACATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : CTTACGCTTCAAGACACCCATCTGCCCGACAGCCGAACCTGCCAATCGATGAACTGCCGCTGACGCCGGATGCTGTTTTCGAGACACTGGCATTGCTGGCCCCCGATGATTTCGTGCTGACCGCTTCCGCATCGATACGCCAGACAGTTACTATACTTTTTCTTCCGGTGATTTTGGCTGGGGCTTGGCGGCCACAGTTGGACTCGCCCTTGGTGAAGAAAAGAGCGGTCGCAACCGTCCAGTCATCTGCCTGATGGGTGATGGATCATTCCAGTATTCGGTGCAGGGTATCTACACCGGTGTACAGCACAAGGCCCATGTCATCTACGTAGTCTTGCAGAACGAAGAATACGGAATCCTTAAAGAATTTGCAGAACTCGAAAACACTCCGAATGCTCCGGGTCTCGATCTGCCAGGGCTGGATATTGTAGCACTCGGCAAAGGATACGGCGCTCAAAGCCGTGAGGTGGCAACGGTGGATGCCCTGAAGGAAGCCTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //