Array 1 1364593-1362505 **** Predicted by CRISPRDetect 2.4 *** >NC_020555.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1364592 36 100.0 30 .................................... TTAAAACTTTATTTGAAATATAGAATTACT 1364526 36 100.0 30 .................................... ATTAGAAAAAGAAAACTACGAACGACTTTT 1364460 36 100.0 30 .................................... GCTTAGCATACTTGCTCCAATCACCGCTCC 1364394 36 100.0 30 .................................... ATAAGAAACAGCATTCCATTACACTTTAGA 1364328 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 1364261 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 1364194 36 100.0 30 .................................... GATGAAGTTATCGACAAAAGCAAATCAAAA 1364128 36 100.0 30 .................................... AGGAAGCGGTATATATCCCCACGAAATGTA 1364062 36 100.0 30 .................................... GATACACTCACACATTCCACACCTAGAATC 1363996 36 100.0 30 .................................... CTTCCAAGAAAATGAAAAGATTCTCCAATT 1363930 36 100.0 30 .................................... AGCGACATCGGGGATTGCACCGAGTCCAAG 1363864 36 100.0 31 .................................... TTTAGACATCCGCGACCTCCGCCTTGCTTCT 1363797 36 100.0 30 .................................... ATGCAAAACAACATTAACTCTTTGATCAGA 1363731 36 100.0 30 .................................... GAGGTTCTTTTTGCAAAAAAACAAATCGGC 1363665 36 100.0 30 .................................... AAGCGCAGGCATTGTATCTGCCCTTAATTT 1363599 36 100.0 30 .................................... GCTAGTGATTGTTTGACTCGCAGGACTCCC 1363533 36 100.0 30 .................................... ACGTACGACTACGACTTGGACATTGACAAT 1363467 36 100.0 31 .................................... GTCCCACCTGTATTTTTTAGTAGTAACATAG 1363400 36 100.0 30 .................................... ACAAAGTTACTATAATGCTTATCAAAAGGA 1363334 36 100.0 30 .................................... AAATCATTCTGATGGCACATTAAAGCTTAG 1363268 36 100.0 31 .................................... CAAAATCCCCGCTGATGTCCTCCCATATCTC 1363201 36 100.0 30 .................................... ATAGGAGCAAGAGACTCAAATAAATCCTCT 1363135 36 100.0 30 .................................... CTATTTGAGAATTCTACTCGTAATGATTTT 1363069 36 100.0 30 .................................... ATATGTCTCATCATTTATAAATGTGCGTAT 1363003 36 100.0 30 .................................... ATGACACAAATAATTATAATAGCGGGATTA 1362937 36 100.0 31 .................................... CACAACATCGGGGATAGCACCAAGTCCAAAA 1362870 36 100.0 30 .................................... GCCGAAATCGCTCATCTTATTGGAATTTGT 1362804 36 100.0 30 .................................... CAAGAGCTTTATGCTACAAAAGACAACAAA 1362738 36 100.0 30 .................................... TATCGCCGCCGAAGGCGTCGTTTTTCTTTT 1362672 36 100.0 30 .................................... CATCATTGGTTCGTCCCTTATCGTCTTTTA 1362606 36 100.0 30 .................................... CCACCGACACTTCCATTACCGGCTTTTCTA 1362540 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1889863-1890227 **** Predicted by CRISPRDetect 2.4 *** >NC_020555.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1889863 36 100.0 30 .................................... TGTGTGTCCCATGTAATTGGAATTTTGCCG 1889929 36 100.0 30 .................................... TGATTTGATTATCGCGTTAATACTTTTTGG 1889995 36 100.0 30 .................................... ACTGCTAAACGCATAGGTGTTCAGCTCTAC 1890061 36 100.0 30 .................................... ACTGCTAAACGCATAGGTGTTCAGCTCTAC 1890127 36 100.0 30 .................................... ACTTGCCATAAAGGGCTGTTGTTCTTTTAT 1890193 34 86.1 0 ...................--.A.........T.T. | T [1890222] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCCTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAG # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTAAAAAAATGACGTATTTAAAAGGAAATAGATGAATAACTTCAGCAAAATCGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACACCCACACAAGATCACAATACCACAGATTCTAAGTCTGGCTCTTCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //