Array 1 646-1622 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLH01000019.1 Gemmobacter caeni strain CGMCC 1.7745 IQ03DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 646 29 96.6 32 ............................G TCGAGACCTGTAAGGACAAGCCGTCTGGCAAT 707 29 100.0 32 ............................. GCGATTTGATCGAGGACCCGACGCTTGACGAC 768 29 100.0 32 ............................. CCCGGTGCGGGCGCGTTCTCGATCACCGATTT 829 29 100.0 11 ............................. CNNNNNNNNNN Deletion [869] 869 29 100.0 32 ............................. CCCGGTGCGGGCGCGTTCTCGATCACCGATTT 930 29 100.0 32 ............................. CGGGCGCTGGTCAGCTGGCTCGGCTCGGTCGA 991 29 100.0 26 ............................. CTTGCCCGACGATTATGGCTGGCGGT 1046 29 100.0 32 ............................. CATAGCTTTCGGCTTGGTGTCCTTGACTGTCA 1107 29 100.0 32 ............................. CGTCGCGGCCAGCATGAGCCAGATCGCCCAGC 1168 29 100.0 32 ............................. CGGCAGCAGCGTGACCTTGATATGGCCCTGCA 1229 29 100.0 31 ............................. CAGGTGGGAACGTGTAGCCCGGGCATGCCTT 1289 29 100.0 32 ............................. ATCGCATGAAAATGTGCGCGGCCCTTCAAATC 1350 29 100.0 32 ............................. ACGCATCCCGCAGTATGTCGCCAGGCGCAGAG 1411 29 100.0 32 ............................. TGCCGAGCTTGCGACTTGCTCCCCGAACAGCA 1472 29 100.0 32 ............................. GCGAAATTCTGGCCGACAGACGCATGGGCTGG 1533 29 100.0 32 ............................. CGCATTCCAGTCGCGTCGCTTCGGCTGGTCTT 1594 29 89.7 0 ......................C.A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 30 GGCTCCCCCGCATACGCGGGGATAGACCC # Left flank : CCTCAGGGCTATAGCTCGGCAACAGGATCGACCCGTCTGTGGTGACGAGGATCGGTTCGGGATGGGTGACGGCATGCGCCTCGAGCGGCGCGGGCCACGGAATCGGGCCATGCGGCAGCAGCAGGGTCAGATGGATCACCCCGTCGATCCGGGTGACCTCCGAGGCCAGCCAGTCGCAGTTCACCGCTTCACACGGCAGGACGGCGCCCTCGGGCAAGGGGCCGAAGTCGAGATCCGCACCGTCGATGGTCAGGACATCGCCCTGCCGGGACAGGGTGAGGGCGGCATCGGAGCGGAAGGGCGAGAACGAGATTTTCATGATGGGTCTCCTCAGAACCAGCGGCCGATGGTGAGCAGCCTGAATTGCTGTCCGGTGGGCGAGCCCGCCAAGACCATTGTGGATGCGGATGGCATCTTGCTCGTAAAACGAAAGTAATATCACGCCAACTCGCCTTCATGCTCTTTGACATTCGTGGAAATACAGAGATATAGCTCAAAGA # Right flank : CGCAGGAATCTAGGCTTTGCGCGCCCAGGCCCCTTCCGGAACGTCGTCGAGTGCGGTGCGCCAGGCGTCGGTGCGTTCGACCGGCAGCGCCGCCAGTTGCAGCGCCGCCTCCGCCACGGCCGCCAGATGGGCGGCGCGGGCCTCGGGCGAGGTGCGGGGCACGCCGTAGGCCACCTGCAGGGGGGCCACCTCGAAGCCCATGTATTCCAGCGCCAGCTTGCGGACCGGCATCAGCAGCGGATCAATCGGGCCGTAGACGCCGTTCTCAGAGAACCGTTCGGGTGTGCCGCCGGTGGTGACGCTGATCATCGCGCGGCGGCCCCGGAACAGGCCGGTTTCGAAGCGTCGTCCGTCCACATAGGCAAAGCCGTAGCTCAGCACCCGGTCGATCCAGCCCTTCATCAGTGCCGGCGGGCCACCCCACCAGACCGGGAACTGCAGGATCACGTTGTCAGCTTCGGCCACGCGTGCCTGCTCGCGGCGGATGTCCTCGGCGTAGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATACGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 15776-16963 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLH01000039.1 Gemmobacter caeni strain CGMCC 1.7745 IQ03DRAFT_scaffold00039.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15776 29 100.0 32 ............................. TCGGAGTTCACGAGCATTTGGCATGTGATCGG 15837 29 96.6 32 ............................A TCAGATGGCCGGAAACTTTTTCGTCATGGAGG 15898 29 100.0 32 ............................. TCGGAGTTCACGAGCATTTGGCATGTGATCGG 15959 29 96.6 32 ............................A TCAGATGGCCGGAAACTTTTTCGTCATGGAGG 16020 29 100.0 31 ............................. CTGAATGAACAGAGAAATGGCCCCCGCCCGG 16081 29 100.0 32 ............................. CCGACATGCCCGCCGCTGCCACGCTCGAACAC 16142 29 100.0 31 ............................. TTGCGGAGAAGGCGCGCGGCCAACGAAATGG 16203 29 100.0 32 ............................. CCGCAGGCTTGGCGCCGTAGACATTGGAGGCG 16264 29 100.0 31 ............................. CTGCCGGTGACGGTCAATGTCACCGCAGGGG 16325 29 100.0 32 ............................. CGGTCGGTCAGGATGGGCGTCGGGCCTATGAA 16386 29 96.6 32 ............................T ACGTTCGGATGGACGCAGAGCGCCGTTGATCA 16447 29 100.0 32 ............................. ACCTTCGCGGAGATAGTGGTCTGGCCTATGCC 16508 29 100.0 32 ............................. CTGGTCGAGGCTGGCGCGAGCAATCAGGCGCT 16569 29 100.0 32 ............................. CCGCAACTCTGCCCGGCAAGATCGGTGCTGGG 16630 29 100.0 32 ............................. CCTACTACAGTGCGCTCAACTGCCTCTCTCAC 16691 29 100.0 31 ............................. CGGACAAGCGAAGGCTATGTTGTCGCTCGGG 16752 29 100.0 32 ............................. TTGCAGACGCCAAGGCTAAAATCCTCTCGGAT 16813 29 100.0 32 ............................. CACTTGACCGGCTGATTGAGGCTGTGGAGGCG 16874 29 96.6 31 ............................A TCTGGCGGATGGTGCGGTGGTCTATGGCGGG 16935 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CTGGCGAAGATCATCCCGCGCATCGAGGAGGTGCTGTCGGCGGGCGATCTGCCCCGGCCCGACCCGCCGCCCGAGGCGCTTGGCCCCGCGTTTGACGATGGGGCGCCCTCGGGAGATGAGGGGCATCGGGGATGATGGTGGTGGTGGTCTCGAACGCCCCGCCGCGACTGCGCGGGCGCCTCGCCGCCTGGCTGCTGGAGGTGCGGGCGGGTGTCTATGTGGGCGACTATTCCACCCGCACGCGCGACCGGATCTGGGCCGAGGTGGTGACCTATATCGAAGAGGGCGACGCGGTGATGGCCTGGACCGCCCCGACCGATCAGGGCTTTGACTTTGCGACGACGGGCCGAAACCGAAGGATGCCCGCGGATTTCGACGGTCTGAAACTGGTCAGCTTTCACCCCGCGAAACCTGACTGAGCAGACCGGGCCGGGGAGCAAAAAATCGGTAAGTTCTTTGACATCGTAATTATGAAGTGAAATCAGATCCTTCTGGGAAGG # Right flank : GGCAGCACGGTCAATCTTGGAGACTCGTTCAATCTGTTCCCCGCACACGCGGGGATGAACCGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18023-18234 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLH01000039.1 Gemmobacter caeni strain CGMCC 1.7745 IQ03DRAFT_scaffold00039.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18023 29 100.0 32 ............................. GATGCGGGGCTGCCGGTGCGGCGGGTGGCCAT 18084 29 96.6 32 ............................T TCGGACGTGCCGATGGCGGCGGCAAGGGCGGC 18145 29 100.0 32 ............................. ATGGTCGAACTTTACGCAATGGAGAATGCGAA 18206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTTCCCCGCACACGCGGGGATGAACCGCACCCCGATCTAGCGGCAGAGGTTGGCGCCTACTGTTCCCCGCACACGCGGGGATGAACCGTGGGCAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18636-19701 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLH01000039.1 Gemmobacter caeni strain CGMCC 1.7745 IQ03DRAFT_scaffold00039.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18636 29 100.0 32 ............................. CACCCCGATCTAGCGGCAGAGGTTGGCGCCTA 18697 29 100.0 32 ............................. TGGGCAATCATGTCGCGCCTTGAGGGCGGGGC 18758 29 100.0 32 ............................. CTCGTTTGTCGGCCATGTGTTGCTGCCCACAC 18819 29 96.6 32 ..................A.......... GAGGCGTAATGGACTGGCACGACGCGGCACAT 18880 29 100.0 32 ............................. CCTATGCCGGGAATGACACGACCGGCTTCAAC 18941 29 100.0 32 ............................. CCCTCTGCGCGCAGAGCATGCGCGACGATGGG 19002 29 100.0 32 ............................. ACAATGACCACGCAGATCCGCAGCATCGGCGA 19063 29 100.0 32 ............................. GATGATGCCACTCTTGCCGGTCGTCGCCATGC 19124 29 100.0 32 ............................. CCTGCCGATGGACATCGCGCGCGAGCCGCGTT 19185 29 100.0 32 ............................. CGCGTCAACTATGGCATTGCGTTGGGGGTCTG 19246 29 100.0 32 ............................. CGGAATGCCATTCCCAGACATTGGCTTTACAC 19307 29 96.6 32 ............................T TCCGCATGATCCGTCTCAATATCGCGTCCGGT 19368 29 100.0 32 ............................. CTGCACTGGCCGCCGAAAAGCGGCGCGTGTCC 19429 29 96.6 32 .......................A..... CCGGTCAGCCGTGGCTTTCAGTCGCGCGTAAT 19490 29 100.0 32 ............................. ACGGTGCAGGGCGGCGGTCGCGGCGATAAAAC 19551 29 100.0 32 ............................. CGGAGCGGGTCGACGCGCGGGCGCTGTGATGT 19612 29 100.0 32 ............................. CGATGCGGCATCTCCGGCTATCCTATTGCGTC 19673 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : AAGGGCGGCCTGTTCCCCGCACACGCGGGGATGAACCGATGGTCGAACTTTACGCAATGGAGAATGCGAACTGTTCCCCGCACACGCGGGGATGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : GACTGCGCAGGAGGGCCTTCCAGGAAATCTGGCCGGGATCTATTCGGGGCGGACGGTCTCTGTGGCCCTGCCGCGATCGATGAATGACCTCTGGCGCATGAAATTCGCGGTCTGCCCGGCCCTCATCCAGTTCAGACAGGATTTCGAACTGTCGGTGTCGAAGATGGTCACCGTCTCGCCGCGGGCCATCGCGGCTGAGGCGAGGGCACGGCAAAGCGTGCTTTTGCCTGATCCGCCCTTCCTGTTCATCACCAGCACAACCCGTATTCCGTATTCCATCGCACCTTTCCCACATTCCACAGGCTCTGTTGCACAAATCGGGTTATGGCCGAGGTTCCCCTTTCCCCGGACGGACTTATCCCACAGCTTCCGTGACGGGTATGCCGAGCGCGGTGTATCCGTTCAGGACGGCGATGCGGACCTGGAGTTCAACGACCTGACGGTCGAAGTCCCGCGCCATAAGGCGCTGCCCCAGCAACTTCACACAGTGCATCTTTGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //