Array 1 1052345-1054994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084397.1 Klebsiella pneumoniae subsp. pneumoniae strain MRSN752019 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052345 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1052406 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1052467 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1052528 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1052590 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1052651 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1052712 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1052773 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1052834 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1052895 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1052956 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 1053017 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 1053078 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 1053139 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 1053200 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 1053261 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 1053322 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 1053383 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 1053444 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 1053505 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 1053566 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 1053627 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 1053688 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 1053749 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 1053810 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 1053871 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 1053932 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 1053993 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 1054054 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 1054115 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 1054176 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 1054237 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 1054298 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 1054359 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 1054420 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 1054481 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 1054542 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 1054603 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1054664 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1054725 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1054786 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1054847 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1054908 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1054966 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32169-33171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084395.1 Klebsiella pneumoniae subsp. pneumoniae strain MRSN752019 plasmid pSI646A-ARMA-Vir-NDM, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32169 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 32230 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 32291 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 32352 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 32413 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 32474 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32535 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 32596 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 32657 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 32718 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 32779 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 32840 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 32901 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 32961 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 33022 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 33083 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 33144 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //