Array 1 38852-37183 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVC01000023.1 Flavobacterium columnare strain 04017018 NODE_23_length_50914_cov_197.492252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 38851 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [38837,38848] 38779 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 38670 36 94.4 30 T.....A............................. ATGGTGCTGAGTAATTCATTACTCATAAAC AATAT [38658] 38599 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 38534 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 38468 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 38403 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 38338 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 38272 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 38206 36 100.0 30 .................................... TTTAGAACTTGTAAAGGAACATTTAACCCG 38140 36 100.0 30 .................................... CGACATCGATAAGATCGTATCGCTTTATTG 38074 36 100.0 30 .................................... AATACCTGAAGAATATTACACTGTAACAGA 38008 36 100.0 30 .................................... ATTGAAGATTTTAAATTTAGTGGGTTAGAA 37942 36 100.0 30 .................................... AGAGGAACTTTCAATATAGTTTCTACACAT 37876 36 100.0 30 .................................... TGCGTGAAATTGTTTGTATATTTGCCTTGT 37810 36 100.0 30 .................................... TAATCTGGAGTACGAAAACATAAAAGAGAG 37744 36 100.0 30 .................................... TACCTATAACAGATGGAAGATTTCAATGGA 37678 36 100.0 30 .................................... ATGGTTTTTGCTCGATATTCAAAAGAGAGA 37612 36 100.0 29 .................................... ATGATATAAATATTAAGGGTATTAAGTGT 37547 36 100.0 30 .................................... CAAGTCTAATTCTGATGCAAACATATCTGA 37481 36 100.0 30 .................................... TCTGATATTACTAGATTATTCATTAGGCAT 37415 36 100.0 30 .................................... TTGTAATTACTATATATGAGGTATAAGGGT 37349 36 100.0 29 .................................... TTAATAGAATGTTCGTAATTAATGCTTTT 37284 36 100.0 30 .................................... TTAAGGGTATTAGTGTATTAAATTATATAA 37218 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 25 36 99.7 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 20006-19313 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVC01000017.1 Flavobacterium columnare strain 04017018 NODE_17_length_74091_cov_218.681467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20005 36 100.0 29 .................................... TAAAAACATTTACAAGTCCTCCAAAGTTT 19940 36 100.0 30 .................................... AGATTATTGTAGATTTATCAAGGAATGTAG 19874 36 100.0 29 .................................... CTCTAGGAAATTTCCATTCGTTTAGAAAA 19809 36 100.0 30 .................................... AGGGTGGAAACTTTTATATGTTCTTCTGTA 19743 36 100.0 30 .................................... TGACCCTTTTGGGTTAATAATCGTTTATAG 19677 36 100.0 30 .................................... TTAAGAACCTTTTTTAAGACCGCAACTCTT 19611 36 100.0 29 .................................... ACATCCACAATACTAACTACTGATGATTT 19546 36 100.0 30 .................................... AATGAGCCTTTTCCAAACTTTTCAGAAATG 19480 36 100.0 30 .................................... ATCAGTTTTTTCCTCATTTATTTTTATCGG 19414 36 100.0 30 .................................... ATGTTTATAATATTTCTGTTTATCGCCTAA 19348 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.2 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //