Array 1 86242-88928 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHS01000003.1 Haemophilus pittmaniae strain NCTC13335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 86242 32 100.0 35 ................................ TAGACATCACCAACGCTAAAGTGGTCGTTGTGCGC 86309 32 100.0 34 ................................ GATAAAACCATGGAAGAGTTGCGCCATGCCGAAG 86375 32 100.0 36 ................................ GCTTAAGTTCCTGCATGCTCAGTCCCTACTAGGCAA 86443 32 100.0 33 ................................ TTTAATGCTCTTAATTTGATAAACCCCAATTAT 86508 32 100.0 34 ................................ TTTCGGAGCTGCAACGCCCTGGCGCTGATGTGTT 86574 32 100.0 34 ................................ ACTCAACTCGCGTTAGCTGCCATTAATCGTAAGC 86640 32 100.0 35 ................................ GTAAGATTGGCGCTCAGACTCAGACAAAGAGGAAA 86707 32 100.0 36 ................................ ACAGCTAGCGCGACCGACGGGAACGTTGTTACAGGC 86775 32 100.0 34 ................................ TATTTGCTTGGCCGGTGCTGTGTGTGGCGTGAAA 86841 32 100.0 35 ................................ ATCAGGATTTTTTACTTGTCTTTGAGCTTGGATAT 86908 32 100.0 33 ................................ CCGCACCCGCCTTTCAGGCTATATACAGTGATG 86973 32 100.0 34 ................................ TCCCTTTTGAAATAAAGACTGAACGCCAAAGTCT 87039 32 100.0 33 ................................ GACCCATTTTTTATTGATCGCCTAAAATCGGTA 87104 32 100.0 35 ................................ TCCTGAAATTCCTTTAAAGGTAAAGCCACAAGTGG 87171 32 100.0 34 ................................ ACTACAACGTAAACGGTCAATTTAAGTTAGGTGC 87237 32 100.0 34 ................................ CGGCAAGCATTGCCGCCTTCGCGTCAGCATAGTC 87303 32 100.0 34 ................................ ATCTGCTGAAATTACTGATCAATGCAGATATTTT 87369 32 100.0 35 ................................ ACGCAATAGGCGGGCGCGGGATTCGTCCGGCATAT 87436 32 100.0 35 ................................ ACTCAATCGCCCCGCTTACCCGCGGGGTATTTTTA 87503 32 100.0 34 ................................ ATTAGGCCGATAAACCATAAAAAATGCTCTTTTA 87569 32 100.0 34 ................................ GCTGTGCTGCTCAAAGTATTCGCGAATCTGTTGG 87635 32 100.0 33 ................................ TAAATATATCGCTAAAAATATCTATGCGGGCAG 87700 32 100.0 34 ................................ GGCGTTGCTTTGGGTGACTCAAGTGAAACCATTG 87766 32 100.0 35 ................................ AAGGTGTCCTTTTTAATGTTTCCACAAAACTAAAA 87833 32 100.0 36 ................................ ACCATAACCGATAGCGCCGGCACCAAATAAGTAGGT 87901 32 100.0 35 ................................ AACAATAATAGCATCAGTTGAAAGACTGTTCTTTG 87968 32 100.0 34 ................................ TTTGTATTTTGTGTCGCTCATGCTTGGTACTGGG 88034 32 100.0 35 ................................ GGTAACGGTGATTTTGATTTTCGCGTTATCTAATG 88101 32 100.0 35 ................................ GCCAACCTCCACAATGCGATAAGACGGGTCGGGGT 88168 32 100.0 34 ................................ ATAATCCATGCCGTGAAAAGTTTGTTTATGCAAC 88234 32 93.8 35 ......A........T................ TTGGCGGGATGTTTAACTATCAACGGATATGGCAT 88301 32 90.6 34 .....TA........T................ GGCTTACTCCTTTGTCCGTCCTTGTGGCGCGCTC 88367 32 93.8 34 ......A........T................ AATGCGGAGACATTGCCAACTCAGGCGAATATCT 88433 32 90.6 35 .....TA........T................ GTGCGGACGTGATTTAATGTTGTGCGATTTTGTAC 88500 32 90.6 34 .....TA........T................ GCCGTTTAAACCAATCATAATGCGGTCTAGCGCG 88566 32 93.8 35 .....TA......................... ATTGCGATCATCTCAGCGGTTGAGCGCGATTGGAC 88633 32 100.0 35 ................................ CAACAAGAGAAATGAAAGTTGTTAAAGTAAAAAGA 88700 32 93.8 33 ......A........T................ GCCTTGATAGTTTGCGGACTTATACGCTTCTGC 88765 32 93.8 34 ......A........T................ AATCAATTATTGGCGTGGATTTGCGAGCTGAATT 88831 32 93.8 34 .....T..................A....... ATCTAAAATATTGAAGGGAAATTTGACCGCGCTT 88897 32 93.8 0 ...............T...........A.... | ========== ====== ====== ====== ================================ ==================================== ================== 41 32 98.3 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAAGCACGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAGTGCGATGTTACACCAGACCAATGGGTAACATTGAAAAATAAGTTATTAGAAACCTACGATCCTCAATGTGACAGCTTGCGTTTTTATCATTTAGGCAGCAAGTGGCGTAATAAAGTGGAACATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATGTATTTGTCATTTAATTCGCTAACCTGTTGTTCTCATTAAAACCCTGATAGGGTAGCGCTCTTCATTTTCTTTAACAATTTGGATGAGTTAAATTATTTGTGTAACGGCATTCTGCCCGTTATACTCCTTCCCACTCCTTATGTTTTAAAGGATAGCGAAATACAGTGAGTAACCTACTGATTTTAATCATCTTTTCATATAGGGA # Right flank : CAAGGTGCAGGAATATGAAGTGTAAGGGATTGTTCCGGCGCAGCTACCCTCGGGATGCTTTTTTATTACCTTGAAAAAGGCTTTTAAACGAACGTTAATAAAATCAATGACTTAGGTGTTGTTTTGGCAAAAACTCTGGTTTTTGAGGGGGCGTTTGGGAGCTTGTTTTCCGCTTTGATGACATTCATTGTATCGGGAATTGATATGCGGCAATGGTTTAATCTGAATTCTTCAGCTGAAACCTTATAAATCCCAAGCAGCTTGATGAAAAATCCCCTAAAATAATAAGCGTATGGCATTGGCTATGCGCTTTTTTATATTTTAAAAGGAGTTTGTTATGAATCGTCATCAATTAGCCCAATATATCGACCACACTGCGTTAAGTGCGGATAAGACACCTGCGGATATTATTCAGCTGTGCAATGAAGCCAAGCAATATGGTTTTTATTCGGTTTGTTTGAATTCGGCTTATATTCCGTTGGCCAAGCAGCAATTGGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 823829-824790 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHS01000004.1 Haemophilus pittmaniae strain NCTC13335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 823829 36 88.9 30 .GG...TA............................ GGCACAATCGCCGACCTTGTTGGGACGGAG 823895 36 100.0 30 .................................... ATTACTGACACCGATCTGCGCCCCTCTTAG 823961 36 100.0 30 .................................... AGTTCTTTGATTTTCCCTTGTACATTCGGG 824027 36 100.0 30 .................................... TCAAATGCCGTTGCCATTTGTGTATTGAGT 824093 36 100.0 30 .................................... GCGCAAGAGTCAAGCTGCCCGCATTGCTAG 824159 36 100.0 30 .................................... TAGCGGCTTTATAGTTTTGTCGCGGTATGC 824225 36 100.0 31 .................................... TCATAATACTTCCTTCCGCCATACTCAATCG 824292 36 100.0 30 .................................... TTCTGAAGCTCAATTACCATAGTGGAATCA 824358 36 100.0 31 .................................... CATCAATATCGCCGGTATCGGCTACCACGAC 824425 36 100.0 30 .................................... GAGTTTTGAAAATGCCACATTAACTGTCGG 824491 36 100.0 30 .................................... AAGCTCACCGGCAATACGTACGAGTGCGCG 824557 36 100.0 30 .................................... AAAAGCGAATAAATTAAGTACCTGGTCAAA 824623 36 100.0 30 .................................... CCGTCTTGTCCGCGCTCCTCGTAAGTCAAC 824689 36 100.0 30 .................................... TAAAGACGATTATTTAATTCACTTTCAGTA 824755 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.3 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTACAAT # Left flank : AATTCGCTTCCGCGCATCTCCACCTTGGCAAACTGGTGCGCCAGCTTTTCCGGGTAAAGATCTAAATTAGGTTTATAGTTTAACCGTCCCACATTGTAATCAAAGCCTTTATCCGCTACCCGTACTGTACCGTCGGGCAATTTAAAACCAATCGTTTTTTCACGGTTTCCGGCTTTATCGGCAGGGCGTTCAACTTCAATTAAAAATTCTGAGCTGTCGTCCGGTTTATCCATGCCACGGCGTTGTAAATCCCGTTCACCAAGTGCAATCACTGAGCAGCGACAATTAAACCCATTTGGTGGGTAAAATGTCGCCCAAAATGGATCATCATAACGGTAAATTTTGCCGTTTAATGCTAAATGAGCCGGGCGGGTTCTTTCGTCGCCTACGGCGGAATATTGCCAGTAGGGGCGATTGTCCACATTATCCCGCATGCGTTGATAGCGGGCAGCAGAATAGGCAGACTGCATATTCACTCGGTAAATCGTATTTAAACGGCG # Right flank : TAGGGAGACTGAAAAGCCCCAGGCTATAAGGCTTTGGGGCTTTTTATATCTTAAAATTTTACCTAGAAGAGCAATAATTGGTCTGAGTTTACCTTTTTTTCTTGTGGTTTTTTTTCACCTACTAAAATTTCCATACTTGCAAATTGTTTTTCTGTAATAGCTAGACACCTGATAGAGCCTTCTTCAGGCAAATGAGTAATCAATCTTTTATGATGTTTTTCAAGGGCATCACGTCCTTTAATAATTCGGGTATAGATCGAAAGTTGTAACATTTGGTAGCCGTCTTTAAGTAAGAATTGGCGAAATTGATTTGCTACCCGCATTTTTGCTTTTGTGGTAACCGGTAAATCAAATAAAACGATCATACGCATAAATACTCCCTCACTCATATTGATATTCCTGCAATATATCGACATCTGGTAACTGCAATAATGTTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //