Array 1 81254-80858 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWAK01000005.1 Escherichia coli strain F426 F426_NODE_5_length_207346_cov_55.8052_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81253 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 81192 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 81131 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 81069 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 81008 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 80947 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 80886 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98385-96770 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWAK01000005.1 Escherichia coli strain F426 F426_NODE_5_length_207346_cov_55.8052_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98384 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 98323 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 98262 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 98201 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 98140 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 98079 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 98018 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 97957 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 97896 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 97835 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 97774 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 97713 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 97652 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 97591 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 97530 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 97469 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 97408 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 97347 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 97286 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 97225 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 97164 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 97103 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 97042 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 96981 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 96920 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 96859 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 96798 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTGTTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //