Array 1 2406660-2405639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054497.1 Flavobacterium columnare strain F2R72 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406659 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406593 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406527 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406461 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406395 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406330 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406265 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406200 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406134 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406068 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2406002 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405936 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405870 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405804 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405739 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405674 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975660-2973266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054497.1 Flavobacterium columnare strain F2R72 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================== ================== 2975659 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975645,2975656] 2975587 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975521 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975455 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975390 36 100.0 72 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT 2975282 36 97.2 30 ......A............................. AATGGTCGGACAACCTATATACACCTTCTT TAATA,T [2975268,2975279] 2975210 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975144 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975078 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975012 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974946 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974880 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974814 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974748 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974682 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974616 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974551 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974485 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974420 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974355 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974289 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974223 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974157 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974091 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974025 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973959 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973893 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973827 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973761 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973695 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973630 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973564 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973498 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973433 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973367 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973301 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================== ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //