Array 1 182448-179920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHQI010000003.1 Klebsiella pneumoniae isolate Kp5173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182447 29 100.0 32 ............................. TTAACCATTCTCCCCGGCTCAGTACCTGCCCG 182386 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182325 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182264 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182203 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182141 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182080 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182019 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 181958 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 181897 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181836 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181775 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181714 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181653 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181592 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181531 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181470 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181409 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181348 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181287 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181226 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181165 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181104 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181043 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180982 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180921 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180860 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180799 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180738 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180677 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180616 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180555 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180494 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180433 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180372 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180311 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180250 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180189 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180128 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180067 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180006 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179948 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5829-6827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHQI010000039.1 Klebsiella pneumoniae isolate Kp5173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5829 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5890 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 5951 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6012 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6073 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6134 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6195 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6256 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6310] 6310 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6371 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6432 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6443] 6494 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6504] 6557 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6618 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6678 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6739 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6800 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //