Array 1 8600-6741 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNH01000014.1 Escherichia coli strain YH17151 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8599 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 8538 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 8477 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 8416 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 8355 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 8294 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 8233 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 8172 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 8111 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 8050 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 7989 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 7928 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 7867 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 7806 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 7745 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7684 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGATATA 7623 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7562 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 7501 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 7440 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 7379 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7318 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7257 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7196 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 7135 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7074 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 7013 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 6952 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 6891 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 6830 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 6769 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63888-63065 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNH01000022.1 Escherichia coli strain YH17151 scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63887 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63826 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63765 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63704 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63643 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63582 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63521 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63460 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 63399 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 63338 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 63277 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 63215 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 63154 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 63093 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //