Array 1 6755-4101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXQ010000050.1 Micromonospora sp. C51 C51_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6754 29 100.0 32 ............................. GCATGTACCGTCTACGTCTCGCAGTCGGGAAA 6693 29 100.0 32 ............................. CGTGACATAGTTGTGGAGTACGGAGACGTAAG 6632 29 100.0 32 ............................. CGTGCTCACCGCAGCATTCGGCGTATGGTCGG 6571 29 100.0 32 ............................. GAATCTGAATGCCGCATCTATCTTTTCCAAGT 6510 29 100.0 32 ............................. GCCGCCCGAGTAAAGTACCCGAGCGGCGTTCT 6449 29 100.0 32 ............................. CGCGACCGTGACCATCACCGGATGGAAGTCTG 6388 29 100.0 32 ............................. TGGCCGTTGCGGAGCCCACCGGTGTGGACCTC 6327 29 100.0 32 ............................. TGCTTCGAGTACGACATCAATTCGGCGTATCC 6266 29 100.0 32 ............................. GTGAACAGGTTGTGCCGCTTACCGGCCACGGT 6205 29 100.0 32 ............................. CCTGTTGACCAGGCAGAACACACGGGGACACC 6144 29 96.6 32 ............................A TACTGCGCGCGTGGCGACAAGCACGCCGACGG 6083 29 100.0 33 ............................. ATCTACCGGCCGTTGAGTTGCGCCCCAGATTCC 6021 29 100.0 32 ............................. AGTCTGTGTCTTTCGTGTGTTGCGTATTTGCT 5960 29 100.0 32 ............................. GCAAAGCCCACGCCAACCGCACGAGGGAGACG 5899 29 100.0 32 ............................. GACTTCGACGTCCAGCCCGTCCACCTGGAGGC 5838 29 100.0 32 ............................. GCCGACCGTGGGGGGAGGCGAAATGGCGGCAC 5777 29 100.0 32 ............................. GGCCGCAGCTAGTACGACCTGCGGCTGTGGGT 5716 29 100.0 32 ............................. AGGGCGAGGATCATCGGCCCGTCGCGGAAGTC 5655 29 100.0 32 ............................. TGGGTGCAGTACGACCGGCTCGCGGTCGGGCT 5594 29 96.6 32 ............................A ACGGGGACGGCTTGCCGCTGCTGGAGCGGATC 5533 29 100.0 32 ............................. TGTCCTGCGCCACCCTTGAGGCATATCTGGAC 5472 29 100.0 32 ............................. CAGCAGTGACCCAGCCAGCCGCAGTCCCAGCC 5411 29 96.6 32 ............................G CTGCTGCGCCGATAGGATTCGTCGCGCGGTGC 5350 29 96.6 32 ............................G GTGAGGCGGTGAGATGCGGCGGACAAGCGGTG 5289 29 100.0 32 ............................. GCGATCACCTGCGTGCGCAGGGCCGCTTTGAC 5228 29 100.0 32 ............................. GACACCGTCACGTCGGTGCCGGTGAACGCGAC 5167 29 100.0 32 ............................. TGGTCGGTCAGGGTGTAGGTGTCGGGGCCGAG 5106 29 100.0 32 ............................. GGCGGCACCGCCCGCGTAAAGCCATTTCGTGT 5045 29 100.0 33 ............................. TTGGCCCCGTATCCGCCGTGCCGCCGGCATCAC 4983 29 100.0 32 ............................. GATGCTGTCGCCTACGGCGCTTCCCTCTACTA 4922 29 96.6 32 ............................G TCGCCAGGATGAGGGAGCGCTGTGTGTCACTC 4861 29 96.6 32 ............................A CATCCTTGGGCGTCTTCGCCGGGAGAACCCGC 4800 29 100.0 32 ............................. GTGATCGACGGCGTCGAGCCGGTCGGCGTGAT 4739 29 100.0 32 ............................. GTGATCAAGGATCCGGACAACCCGTTCGGTCG 4678 29 100.0 32 ............................. GGCACCCCACGCATCACCTGGAGCCACAGTGT 4617 29 100.0 32 ............................. GACCTGGACGCGATGGTGCAGGCGACCGCCCC 4556 29 100.0 32 ............................. CGGTCGCTGGCCAACACCCGCGCGAACGTGGC 4495 29 100.0 32 ............................. GGTAGCTGACACGTCACCACCGTTCCCGAAGA 4434 29 96.6 32 .....................A....... GTCGAAGCTAACCTCAGCCATTGTTCCGCTCC 4373 29 96.6 32 ......T...................... TCTCAGCCGGTGACCTCACCCGGCCACGGCCA 4312 28 96.6 32 .................-........... GAGGACATCGCGGCACGGTGGGCCAAGGAGCT 4252 29 100.0 32 ............................. CGGGTTGCCTGGCGCGCTGCTCGACGGCAAGG 4191 29 100.0 32 ............................. TGGCGCAACCGCAAGCAGAAGCCCAGCCTGAA 4130 29 100.0 0 ............................. | A [4108] ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CGCACAAGCCGAACAAGCGCGGATGTCCACCGGTGAACAGCTCGCTCGCGAAGTCCTACGCCAACTCCGCGACATCGCCGACCGCGTCGACGAACTCAGCGACACCGTTGGTCGCATCACCCCTCAGCAACGCAAAGACGCACCCACGCCGGGCTCCCGCAGCGTCGACCACCCTGCTCCCCAACGGGACGAGCCCGACAGCCCGAGCATCTCCGGCTAGGTGCAGCGCCACGTTCAATCGTCCATCTCGAAGGCTGGCGATCCTGGCGTAAGCGGTCGCCAAGGGCACCCACCTGTGCCACATCGCGTTCCGTGACGGCCACTCATGTCCCCTCGATTACGAGCCGTTCGGCGCTCTCCATACCCGCTACGCTGAACCGGGCTACCAGCAGGCAACCGGATACCTAACTCCACGGACCGACACAGAAAGCATGAAGATCTTGAAACTGAAAGTGAAGAAAATCAGCTCACTTGATCTCTAGCGCCGCAGGTCAGGAAGC # Right flank : CGACGTTGCTGTCACTCATAACATCGCCTCACTGCTCGCGGGGTGATCCCGATACGGCGACATGACTTCGGCGGAGGAAGGTCACTGAGAGTTCAGCTGGGGTCGTGTTCGTCACCTTGTTTCGGGATCGCCGCCGAGGTGCGGTCGTTCTCTCGAGAACGGCGTCCGAAGCGGCGGCGTTTTGATGCCTTACTCCAGCCCCGGGACAGGGCCGGGTTGTAGGTCTTCCGGTCGGTGGGTCGACGGATCAGCGTGATGCCATCAAGGTCGACAGGCTGCCAGTGGTGGTCGTGGACCTGGAAGCACAGCCGTTGTTCACCTGGCTGCTGATGGACGAGCAGGGCACGACCCGGCCCGGCCATCTCGACAACTTTGGCCCAGAGGCGTTGCCGGATTCGGCTGTTTACGTGGCCCACGTACACGCCGGCGGAGATTTCTAGCAGCCACTGAGTCAGGTGGCCGCGCAGCCCTTCAGGGCAGGCTGTGAGGATGATGACGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13983-12553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXQ010000042.1 Micromonospora sp. C51 C51_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13982 29 100.0 32 ............................. GATCAGAAAACACACTCGACTAATGCGATCGG 13921 29 96.6 32 ............................T ACTCGTTCGATGACTACCGAGGACTCCCCAAC 13860 29 100.0 32 ............................. GCGAGGTACCCTCACGATGGCGAAGTCCACTC 13799 29 100.0 32 ............................. GTGAACGTACACGAGTATGTGATTTATTATCC 13738 29 100.0 32 ............................. AGGGCGGCCACCAGCAGCACCTTGCCGACTCC 13677 29 100.0 32 ............................. GCGGCGTCGGCTTCCGGGTCCACCTCGACGGC 13616 29 100.0 32 ............................. GTGGGCGGCCGTCTTGTCCCGGTAGTCGCCGT 13555 29 100.0 32 ............................. CGCTGGGGCTCGGCTACACCGCCTCCAACACC 13494 29 100.0 32 ............................. TCCGCCTGCTGCTTGCGCATGGCCTTGCTGAT 13433 29 96.6 32 ............................T GTCCGTCCAGCCGTACCCGAACAGGGCGAGGA 13372 29 100.0 32 ............................. GACGGACGTCGCCGCGATCCGGCCCTGCGTCC 13311 29 100.0 32 ............................. CGGTCGCGAACACGATCCGGGGCGGCCCGGGG 13250 29 100.0 32 ............................. AGCAGGGCCGTATTGCCGCGCTGGTGGCCGGC 13189 29 100.0 32 ............................. TGGCGGACTCAGAAGCGGGGACCTCGGTCGTC 13128 29 100.0 32 ............................. CGGATGGGTCCTCGGGCCCGGTTGCAGGTGCT 13067 29 100.0 32 ............................. CGCTCGGCCACGTCATCGGGCGTGTAGCCGTC 13006 29 93.1 32 ..A.........................T GCGCAGCTCGCGCGCGGCTTCGGCCTCACGGA 12945 29 100.0 32 ............................. TCCCGCGCCACCGCGTTGAAGACCGCCGGTGG 12884 29 100.0 31 ............................. GGGACGACAGGCTGCGGGCCTCGCCTTCCCC 12824 29 100.0 32 ............................. TCGGCCACCTGCTGCCGGTCCCGGTCGTACGC 12763 29 89.7 32 .....................C..G...G GAGCAGCTCATCCCCTCCAACCCGGCCACCGA 12702 29 96.6 32 ..C.......................... GCCGACGGGCCCGTCATCGCGTACATGGTCGA 12641 29 93.1 32 ........................T...G AGGTGCATCATCGCGCCCTGATGTCCGCCGGC 12580 28 86.2 0 .....T.....AT........-....... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.0 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GGAAGCAGCACGCACCGGCGAGAGCCAGCATCGTCCTCCAGCCAGCGATCAACCGTGAGACCACTCCGGCCCACCATGCTCGTGGACAGGTCGCTCATCCAGGGGCCTTTCCGCTCCCCACCCAGTTAAGGAGGCCCATCTCGTCGACCCCAGCCATCGGCACCACAAACCCAAAAACTCGCGCCACAAGCGGCGACGAGTGGTCCACTGCCAGTGACCGAACGGCTCGGCAAGCTGCCGGGAGCATCGCGTCACATCCTGATTGGAACCGATGGAGCAGGACGGGGCGACGGCCAGGAGCGGCGACCGAAACGTGATCGTCTTCAAGCGAGTGTGAAGCGCCGCCTCCCTTCGTCCCCATGATCGCCCGGTATGCTGCTTTCCAGCTGCACGTCAACGGCTACCCGCTCCCTTGCAACGCCAGTATGGAAGGGGCGATCTTGCGAACCAAAGCGAATGAAATCGAAGCAGTTGATCTATAGCGATGCAGGTCAAGAAGT # Right flank : AGCGATGGCGCTGTTCAGAGAGTCTCGGCGACTGCTCCCCGCGCACGCCCGCAAACGGAACACCGCAATGGGTGTCTGTTGTGGTCGCGCTCGGGATGGTCCCGCAACGGAGTCGACGATCATGCCTATGAGCAGGATGAGAGCCTGCCGACGCCGCACCGGCGCGAGCGTCCCGGCGCCCGGGCCGTAGCGATGACCAGACTGCAGAGCATCTCAGCGCAATGGAGGGCGCAGCCTGCACAAACGACCGCCGGCCTCACCGCCTCGATGCGCCGACCCACACAAACCCGCGCCGTCGCCGAACACGCCGAAGGTTCGCATCGACCAGACGCGTCGCGGCGGTTGGTCCGAACCCGTGCGTCCAGACCAACCGCCGTCCGTGTGATCCGTCAGGCGAGTGGATGTGGCTCGTTGGTCATTGCCGCCAAGGCGCGTGCGACCTCCTGCAGCGTGGCGCGGACATACGTGGCGGTGGTGCCGGCGCTGCTGCCGCTGTCCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32302-28976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXQ010000042.1 Micromonospora sp. C51 C51_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================== ================== 32301 29 100.0 32 ............................. GATTACTGGCCGATCATCAAGGCCATCAAGGA 32240 29 100.0 32 ............................. GAACAGCAACACCTCCTGGTAACCGTGCTCAC 32179 29 100.0 32 ............................. CGAAGCGCGGACGGCAGTCCCGGACTCGCACG 32118 29 100.0 32 ............................. AAAATTCTCGCTGGCACTCCCGGTGGCGCGCG 32057 29 100.0 32 ............................. GTGCCGGTATGCACTCCTGCTGAGTACGCGAT 31996 29 100.0 32 ............................. GCGGCGACCAGCACTGTGCCTGATCCGACGGT 31935 29 100.0 32 ............................. TCGCTCTGCGACACGTAGCCGCGGCAGGAGAA 31874 29 100.0 32 ............................. TATCTCGAACACGCCGGCGCGGTTGGGTCGTT 31813 29 100.0 32 ............................. TCCACCAGGAAACCGAAGGCTTCCGTCAACCC 31752 29 100.0 32 ............................. GCCGACACGCTGACCGCCTGGTTGGCCATCAC 31691 29 100.0 32 ............................. AATCGTTACCTCGTCGCGGTCATCGTCGGCTT 31630 29 100.0 32 ............................. CGCGCATCGCCGCCAGCGTCACCGGGCCGGCC 31569 29 96.6 32 ......................G...... AACATCCCCAGGACCGTCTACACGCGGCTGAT 31508 29 100.0 32 ............................. GTCGCGCCGTCCATGTCGCCCTGGAGCGCCGG 31447 29 100.0 32 ............................. GCGGTAGCCCCGCCGCCGGAAGTAAGCCAGCG 31386 29 100.0 32 ............................. GCGGCGACCTGGCCGAAGTCGTACTCGCAGTG 31325 29 100.0 32 ............................. TGCCCGGCGGTGATCTGAGCCTGCCGGAGCGG 31264 29 100.0 32 ............................. CTCCGCACCTGGCACTCGACGCTCGACGACAA 31203 29 96.6 32 ............................G TAACTCCAGACCTACCGGGGGGCCGGCACGGG 31142 29 96.6 32 ............................T TTGCCCGGTTGGGAGCCGTCCGGCGGGGCCGC 31081 27 89.7 32 ........--..................G GAGCGCCATGGCCTCTCCTTCGCGGTCCAGCC 31022 29 100.0 32 ............................. AGGGAGCGGTAGCCGTCGGCCGGTTCGAGGTG 30961 29 100.0 32 ............................. CTTTCTGCGGAGGTGCCCGTAATGGGCGATGC 30900 29 100.0 32 ............................. ACCAGCGAGTCCGCGTAGTGGGCCACGGAGAG C [30884] 30838 29 96.6 32 ............................G CCGAGAAACAGCCAGCGGATCCCGGCAGCGGC 30777 29 100.0 32 ............................. GTGCCGTTCGGCCGCGGCTCGTACTTGACGCG 30716 29 100.0 32 ............................. CACGCCCAGACATGTTCGCTGAGCGTGTCACC 30655 29 100.0 32 ............................. GTCGCCAGCTCTACACCGGCCGCCCCGTGTGC 30594 29 100.0 32 ............................. TCCGACGACATGCCGACACCGCCCAGCAGGGC 30533 29 100.0 32 ............................. CCGACATCGACACCACCGACAGGGTTCGGCCC 30472 29 100.0 32 ............................. CCGCCGTACTGGGCGCGGTGGGGTCCGTGGGG 30411 29 100.0 32 ............................. GTGGCGCACATCGTCGCCACGCTCCCCGAGGT 30350 29 100.0 32 ............................. ACCGACGACTCGCGGCCCAACACCGGGAAGCC G [30333] 30288 29 100.0 32 ............................. CGGCCCCGGCTGATCGGAGGATGGGTCAGATC 30227 29 100.0 32 ............................. GGGGGCCGATGACCACGTCCCCGTCGTCCGGC 30166 28 96.6 32 ................-............ AGCCAACAGGCTGGCGGGTGCACGCGTCACGG 30106 29 100.0 32 ............................. GTGATCGTGCCGGGCCCGTCGCGGGTCCACTG 30045 29 100.0 33 ............................. GGCACGTTCACGATCGCGTTCGATCAGGTGGAC 29983 29 100.0 32 ............................. CACCCAGCTACCACCCGCCCCACCACGGCGGC 29922 29 96.6 32 .....................A....... TGGCACCGCCGCGACGGCCTCCACGGCGTCAC 29861 29 96.6 32 ...........................T. CCACATCGTGGCGTACACGGCCGGCGGCACGG 29800 29 100.0 32 ............................. GGGGTCACCGCCGGCTACCTCGACTGGACGGC 29739 29 96.6 32 ............................A TACACGCTGGTGGAGGACTACTCGGATGGGCG 29678 29 100.0 32 ............................. GACGCATCCGCGCCGCCGTCCTACTCCGCGAC 29617 29 100.0 32 ............................. GTGGCGAGCTCGCCGGCGAACCCGGCGCGGAG 29556 29 100.0 32 ............................. TCGTCGTCGATCTCGACGCTGATGTTCGTGGT 29495 29 100.0 32 ............................. GAGGCCGACCGTCAGAACCTCCTCACCGCCGC 29434 29 96.6 33 ............................A CAGCGCGAGCCGGCCACAGTGCCCGGTGTGCCA 29372 29 96.6 32 ............................G GCGCGCGGCGACCTGCCGATCTTCGTCATCAT 29311 29 96.6 32 ..............G.............. AGCCAGGCCGGCAGCGGAGCCACCAGCTCGGT 29250 28 93.1 33 .....................-......G AACCCTGCCTGGCCGGGCGGCGTACATGCCGGT 29189 29 79.3 88 ............G.T....AA...G...G GACCGCGTCGCCAGCGTGGCTGAAGCCACCTGCCCCCGCGCATGCAGGGTGGTCCGGGGCCGCAGGCCGCTATCCCGGCATGCACCCC 29070 29 89.7 32 ..C...........T.........G.... ATGTCGACGTACAGGATGAGTTGGGCATCTTG TGGG,C [29046,29065] 29004 28 75.9 0 .....T..A........A.A....-..AA | A [28981] ========== ====== ====== ====== ============================= ======================================================================================== ================== 54 29 98.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CTCCTCGTCAATGAGGAACTCCGCCGGATCCACACCGAGCTGCTCGCGCTGCGGCGACGCCCAGTAGGCCGCGTTCGCGTCCTCGAACGACTGGTCACCGTCGTAAGAGATAACCCAGATATGGGCATCGCGCTCGCGGTCCACCCACGACCCGTGCACCTCGAAACCGAACTCACGCCGCAACGGCACGACCAAGGTTTGCCATGCCCGCACCCACTCGTCTAGCCGCCCCTGACGCACGCTGTAGGTGCGGATCTGCACAGTCCTCACAGCAACTCCATCGTGTCCGGCAGCACATCCTGACGCCCAGCACCGCCCGCGGAGCCAGCTAGGCCATTCGCGCAGCGGTAATCCTCACGATGACACCCGCTACGCTGAACCCCAAACTTCCTCCGCACCACTCACCCGACCCGCTACCAACGGAAAGAAGCTAGACGATCTTGCGAGGCAAAGTGAACGAAAACAGAGTACTTGATCTCTAGCGCCGCAGGTCAGCAAGC # Right flank : TACCGGCTAGCGCCTCAGACGGAGTGACCAGACCGGGAGACGCCCTTCCAAGTCACGTCATCGGCGCTCCCACGGCTGGCTGCTTGACACAGGCCGGGGTAGCCGCCCCGAGGGTCATCGCTGCCAGGGTCGCCGTGAGCTGATCAACCTGGCCGCGGGTTACACCCGGCATGCAGATGAAGTGGCTGAGTCCGGCCAGCGTCGGCATCGGCCATCGCGCCAGAATTGCCGGAGGCGGCCTACGCAGGACAACGGTCAGCGCCTGGGGATTGCGCCAGCTCGGCCAGCCAATGTCCAGCAGGCGTTGGTGGGCGTACTGCGCCACGTCGCGCCCGGACTCCGCGCGTATGCGCAGACCCGTACGACCAAGTTGTTGAAGGACCACCCACAGCATCAGAACGGCTAGTCCGTTGCGTGAGCCGGTGATGGTCGTGTCAGGGCTACCGGTATAGGCGACGACTTTGCCGCATTTGTCGTTGTCGTGGTGACGGGCGATGACG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 37756-36506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXQ010000042.1 Micromonospora sp. C51 C51_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37755 29 100.0 32 ............................. GTACACCACCACACACGACCTCGGATCAGTCA 37694 29 96.6 32 ............................T CGTTCCCGGCGGCATTCGTTTTCCCGTCGCGT 37633 29 100.0 32 ............................. GGTACTCGGGAGCATTCTCGGGTACCGTTCTC 37572 29 100.0 32 ............................. AGATACGCAACACACGAAAGACGCAAACCGTG 37511 29 100.0 32 ............................. GTACCGTCAAGCGGCGAACCGGTGACCCCACT 37450 29 100.0 32 ............................. CTTGGGGAAGACTTGTCCGATGCTTTCCTCGC 37389 29 100.0 32 ............................. ACTCCGGCGCGGTTGGGTCGCTCGACGTCGCT 37328 29 100.0 32 ............................. TGGGGTTCAACCACGTCAGCGGCCCGATCAAG 37267 29 100.0 32 ............................. TGGGGTTCAACCACGTCAGCGGCCCGATCAAG 37206 29 100.0 32 ............................. CGTCATCGACAAGGAAACGCTTCCGCGTGACG 37145 29 100.0 32 ............................. GCCGTCGGCTGCGCGTGCGGTGCCACGTTCGC 37084 29 100.0 32 ............................. GCCTCGTAGAACGTGTCCACGTTGACGCCGAT 37023 29 100.0 32 ............................. CTGGCCGGTGCTCGCCTGAGCGGTGCCAACCT 36962 29 100.0 32 ............................. GGCCTGCTGGATGTCCTCCGGGGTGCTGGCCC 36901 29 96.6 32 ............................G GTCATCATGTCCCCGTCCTCGGGGACATCCCT 36840 29 96.6 32 ............................G GTGAGGATCTCGGCGGCCAACTCGGAAAGCAG 36779 29 100.0 32 ............................. TGGCGGACCAGGTTGTAGATGGCCTTGTTGGC 36718 29 100.0 32 ............................. GCGAGGAGAGTCGCATGAACACCGAGCCAATG 36657 29 100.0 32 ............................. CCGAACGCCGTCGCCTACTTCCGGCGGCACGG 36596 29 93.1 32 .......................A....A CCCTAGACGGCGGAGTCCGGCGCGCGAACGCG C [36578] 36534 29 93.1 0 ....................C.......G | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TTCGACCCGTGGTTCATCGCCGGCGTCATCTCCCGCACCGACAACCTGCGCATCGCCGGCCGCGCCGCCAGCACCGGCAACGGGGCCATGCGCATCGACGTCCGACGACTGTCCATCCCGGTCGTGGCACTCGAACAACAGCACGCGTACGGCCAAGCCTTCCGCCAACTCGTCGAGTTCCGCGCCACCCTGGAGCGAGCATCAGCAGCCGGAGCCACACTCGCCCGCGAGATCAGCGACGCCCTGACATCGGGCACCCTCGGCCTCACATCCTGATTCAACTGACCATGATGGAGCTGGGCGGTCGGCAAACCAATAGCGGCGACCAAAACTGGTCACCCCTGAGCAGCCGTCTGAACCGGCCGCGCCCGGTACGCTGCTCTCACCGCACCTCAGCACTGGGGCGTCGCCCTTGCAACACAGTCCGCAAAGAGGCGATCTTGCGAAGCAAAGTGAATGAAAGCGGAGTAGTTGATCTATAGCGCCGCAGGTCAAGAAGT # Right flank : GAGACGGTGAAGACGCGTGGCTGGGCCGGCAACTGCTCCCTGCGCCTAGGGATCCCGCGTCGAGTACCGAGCCGCCGGCCTGTCACGGTCGGCACTCGGTCGACTACCGTGAACGCTGGCGCGACACGTTCGTCCGTCCATGGGGGAGGAAGCTTGCGGCACGGTCGGCGTTCGTCACTGACGCTGCAGTTGTCGGTGCTTCTGCTCGCGGTGCTGCTTGAGGTAACGACGAGCCTGGCCACGGACGCGGCTGCTGGTTCTGGGTTGTTCGCCTGGGTCGAGGTGATCGCCGGGCCGGCGCTGATCGTGCTCCTGCTCGTGCTGGTCGGCGGCAACGCGCTGATTCTGTGGTGGGAGAATCCTCGTACGCCGAAGCCGACCTGGGAGGGTGACCGTTCGCCCTATCCGGGACTGTCGGCGTTCACCGAGCAGGATGCGGCGGTGTTCTTCGGCCGCGACGAGCTGGCTGCGGATCTGGTCCGTCGTATGCATCGGCTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //