Array 1 43818-45493 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRLQ01000015.1 Escherichia coli strain FWSEC0340 FWSEC0340_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43818 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 43879 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 43940 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 44001 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44062 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44123 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44184 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44245 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44306 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44367 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44428 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44489 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44550 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44611 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44672 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44733 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44794 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44855 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44916 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44977 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45038 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45099 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45160 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45221 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 45282 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45343 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45404 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45465 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61010-61649 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRLQ01000015.1 Escherichia coli strain FWSEC0340 FWSEC0340_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61010 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 61071 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 61132 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 61193 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 61254 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 61315 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 61376 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 61438 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61499 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61560 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 61621 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //