Array 1 1-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLNR01000084.1 Hydrotalea flava isolate 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. ATCGCCGCCTCAAACAAATCATTTCACGCAAAGGCG 67 30 100.0 36 .............................. TTTTTAATTAATAATGCTTTCGCAGGCAAATAAACT 133 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 41 CTTTTAATCGTACCATATTGGAATTGAAAT # Left flank : | # Right flank : TGCCGCAATAGCTCTATCATTCAATTGAAGTATACAAATACTTTGAGAGGACGTTTTAAAAAAGTACGGAAAACAGGAAATGGGTAGTACTGTTTTTTCCATACTACCCATCTGTATAGTGGAGATAAGAAAGTCCGAATTGGTATTATTTGAAATCTGTCGATTTTAGTCCTTTATTTACTTTTACATCTTTCACATCTAATTCAATTTTCAGTCTGCCCTGATCAACAATTGTTTTCATAGGCACCTGCAAACCGTTGTATGATTTATAATCATGATAAAAAGTTTGAATAACCATTTTTCCTGCAGGGCTACCATCTTTTTCAGTTACAGATTTTAATTTTAATCCGGTTTTTACATCATAGTAATTGGTAAAAGTTCTGCCCTTGGGCGATTTAATTTCAACAGCATAAGCATCATTGCCTTCAATGGATTCAATATCTTTTACTGTATAAGTATAACCATCTTTTGATAAATAATACGCTTCAGGCAGCATGGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 1690-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLNR01000057.1 Hydrotalea flava isolate 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1689 30 100.0 35 .............................. GTGGTTACCTTTTGGTAATATAAATCATGTGCCAA 1624 30 100.0 36 .............................. GATGGTGGTAACGTTTCAATTGGGACAAATTCTAAT 1558 30 100.0 35 .............................. CAGGATTAATCAATAAAGGCGATAGCAGTACAACA 1493 30 100.0 34 .............................. AAATCTACTAAGACAGGAACGAGTTTATCTATTG 1429 30 100.0 37 .............................. ATGAAATTGAAGCTATGAAACGCCTTTGGGATGGCGT 1362 30 100.0 37 .............................. TAATTTGTAATGAAATAGCGCTTAATAAGGGTATAAA 1295 30 100.0 35 .............................. TACAAGGTTACGGAGAGCGTAAAGCTGAGTTTAGG 1230 30 100.0 36 .............................. ACACATGTTTAATTAGTTTACCAGCTTCATCATCTG 1164 30 100.0 36 .............................. GCACCAAAGCGTAAAGCGCAAAAGGAGGTGGCGTAA 1098 30 100.0 35 .............................. AGAGAATCAAAGCGGATTTATCAATAACGTTGGGA 1033 30 100.0 36 .............................. ATGTTATTTGTAGCTCACAACACTTTTGATTATCCT 967 30 100.0 36 .............................. TAGTTGGCTATTATCGGTATTCTTGATAAAATAAGG 901 30 100.0 36 .............................. GAAATTAAACAGGCTATGAGCAGCCCGGTAAAATTG 835 30 100.0 36 .............................. TACATGGGTTGAGGTGCAATTAATTCTGGTGGCTTA 769 30 100.0 37 .............................. ATGGATGATGAAGTTAGTAATAAAGAAGGAGGTGAAG 702 30 100.0 35 .............................. GTTAAACAATTGGAGAAGTTGATGAATAAAAACCA 637 30 100.0 35 .............................. TATCAATCGTATGCAATGAAACTGAAGAAACAGTT 572 30 100.0 35 .............................. GCTATTGCAGAAATGGAAAGCGATACTGATATTGC 507 30 100.0 36 .............................. AAGGCTATGAATGCTTTGAAAGCTAAGGCATCACGT 441 30 100.0 35 .............................. CTCGTTGTAATAACATACGGCAAGGTCTTCGGGTG 376 30 100.0 35 .............................. TAAATTTAGACTGTAATTACTGCGTTGTAAAGCTA 311 30 100.0 35 .............................. ATGGAGCAGAAGGTGCTATTGAGCCCGCTTATCGG 246 30 100.0 36 .............................. GAAATAATTGACAGCATTACCCGTGGCGATGATACT 180 30 100.0 35 .............................. AGGATATAAGCCGTTGGCGTGATGCTTTAATAAAT 115 30 100.0 34 .............................. ATTCGTGTGTATAAATACGATAGCAATGACGCTA 51 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 CTTTTAATCGTACCATATTGGAATTGAAAT # Left flank : AATTAAATATAAATTAATATAAAAAATGTATATTATTTTAGTATACGATATAGAGCAAAAACGGGTAGGTAAAATGTTAAAACTATGCAGAATATATTTAAACTGGATACAGAATAGTGTTTTTGAAGGGGAGATTACAGAGGTAAAACTAAAAGAACTGATAGTCAAAGCCAAAATAATGATGGATATTAAAGCCGACAGTTTAATCATTTTTAAAAGCCGACAGGAAAAATGGTTAGAGAAACAGGTAATTGGTAAAGAAAAAAATGAGGTAGATAATTTTATTTAACATCGTCTACCACCCTATATGTAGCTTTAAGGCAACTACAAAAACATGTAAGTTTTTATCATAAAATAGCACCAATCATACTTTCATCGTATCGTCGAACAAAGGCTGCAATAATATTATTACAGATCGACTACTTTTTAGTGCAAAAACCTTATATTTATTCCATTAATTTGCATTGCAAATCAACTGTTTATCATTTGCTGATAAGCGG # Right flank : TTTTCAAAGCGCCAATTCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCATATTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //