Array 1 15516-18027 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMG01000132.1 Paenibacillus macerans NBRC 15307 PMA02S_CON000132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 15516 32 100.0 33 ................................ CAACAACCTGGAAGACCTGCCGAACAGCATTTA 15581 32 100.0 37 ................................ GGCGCGCGGCTAAGAAGGGCTATATCGCGGTCATCAT 15650 32 100.0 36 ................................ AGACGAAAAGCTTAAAGATCACGTGGATTTCGGCAC 15718 32 100.0 35 ................................ TGTACTTGGGGAAATCAACATTATCAAAAGTCAAA 15785 32 100.0 35 ................................ TTCCCATCCACCATCAATGTTTCCGTTCCAAAGCC 15852 32 100.0 34 ................................ ATTGTCACTCGTAATTCTTTGAATCATGGCAGGT 15918 32 100.0 35 ................................ CAATCAAATTCATCTTCTCCACAAACCTCAACATA 15985 32 100.0 37 ................................ ATAAATACCGATCTAAAAAATCGCGGCGAAGGTGACT 16054 32 100.0 35 ................................ ACCGTTAATTTCATGGGTCACGGTGATTGTAAAAC 16121 32 100.0 35 ................................ TGCGTGGGCCAAACATCATTGATCCGGCGGACCGC 16188 32 100.0 36 ................................ CGGCGTACATTTCCCGACCTCCAGCGGTCGATTATC 16256 32 100.0 35 ................................ AGCGATTTGACGCCCGATCAAGCGCGGAGAAAAGC 16323 32 100.0 33 ................................ ATAGTACGTTGCGATATTACGCGCATTGATAAG 16388 32 100.0 34 ................................ CTTGGGGCGGACTTAGCGACTACGTGAATGAGGC 16454 32 100.0 36 ................................ CGCGGCGAGCCAAGCATTTAAATGTTGCTGTGCAAC 16522 32 100.0 35 ................................ AAAAGATAAAGGAGAGACAAGGACAATGAGATTTA 16589 32 100.0 35 ................................ GGCCAAATGACCGGCTTAGTGAACGATGTTATCGC 16656 32 100.0 35 ................................ CGCCAACACGTCAATTTCGTCCTGAATGCGCTGCA 16723 32 100.0 34 ................................ GCCGAGCTCGCGGAGATATTTTCCGAAGTCCGCC 16789 32 100.0 35 ................................ TCGTAGTCGTAGCGTTATGTAGTCGCCGGGTCCGT 16856 32 100.0 36 ................................ ACCGCGTATCACCAATATGGTTCTAGCGGAGGAAGC 16924 32 100.0 37 ................................ TCGGTTGCGATCCCTAACATCGCAGACAAGGAATAAC 16993 32 100.0 33 ................................ TCGGCCAAGACAGCCGCAGGATTTCGTTTGGCC 17058 32 100.0 37 ................................ GCCCCTCGCGGACCTACGACACGTAAAACGTGACATC 17127 32 100.0 34 ................................ CGTAGCTTTTATGGCGTCTTCCACGTCTGGACAA 17193 32 100.0 33 ................................ CTTTACCTTACATATGGCGCATGGGTTTTCAAA 17258 32 100.0 34 ................................ AGAAAGATATTGGCGCAACTTTTACGGTGCTCTC 17324 32 100.0 34 ................................ CAGGCTCGGATATCCTCGTTCCCGTCCTTACCTT 17390 32 100.0 36 ................................ GTCTCGCCCGTCTCCGGGTCAGCGAAGCCCTTCAAA 17458 32 100.0 33 ................................ CCAACATGATTCGGCATCCTGTTTAATATATTT 17523 32 100.0 37 ................................ ACATCAGGACAGCGACCCGGTAGCAGACGGGCGTACG 17592 32 100.0 34 ................................ ATCCCGGCGCTTATCAAACGCCTTCCCCACGTCC 17658 32 100.0 36 ................................ TGCGAAGACGGATCGTCGACGATAACGAGGTCTGGC 17726 32 100.0 39 ................................ AAATCTCGAAAGCTGACGACGAACGCACAATTCCATCAA 17797 32 100.0 34 ................................ CGCTGGCGGAAGCCGAACACGCAAAACGCATAAA 17863 32 100.0 35 ................................ TTAAGCAACTTTATCTGGCAGCTGGCCAAGCGGTC 17930 32 100.0 34 ................................ AACACAAGTCGGCGAACATCATACCCATGCTTAC 17996 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Left flank : ATGAGTACCCGCCATTTTTATGGCAGTAGGTGAGTCGGGATGCTTGTACTCATTACTTATGATGTTCAAACAACAGGCGTGGGAGGGGCCGCGCGGCTCCGGAAAGTGGCTAAGGCATGTCAGAACTACGTGCAGCGGGTGCAGAATTCCGTGTTTGAGTGCATTGTGAATGCAGCCCAGTTCACTGCTCTGAAATTGGAGTTAACCCAGTTAATTGATGAAGAAAAAGATAGCTTGCGATTTTATCGGTTGGGCAATAACTACAAAACCAAAGTAGAGCATATTGGGGCCAAGCCATCGATAGATTTAGAGGAGCCGCTTATCTTCTAGCGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGATTTGTAGAGATTTTGGTTAAAATTAATGGAAAAATTTCGTGCTCGCAAAATGGGTTCGCACTTTTGGGCTTACGAGGCCTTGTGCCACAAGGATTCGCATGGCCCGCT # Right flank : GTTATGCGACGCTCACGGCGGAATACCCGGACATAGTCGCACCAGCAAAATGAGCTTTTTCTCGAACAAGCGGTCAAACGATTGAGAAATATTCAGTCCTTAAATAGCCGGGGATAGAGAGGAAAAGTACGGGCGGGGGAATGACGGAGGAAACGGAGGTCCTATACATCGTTATCAGCAAACAAGAGGTGTCCACGCTTAATAAGATTGTCAAATCCATCGACAAATCCGCCTTTATCACCATTCACGACGTGCGGGATGTGTTTGGCGAGGGGTTTTTGGATATTTCGAAGTGAGTGACAAAAAAACGCAACCTTATTTGGTTGTGGTTTTTTGTTTCTCAATAAGTAAGTTGGCAAGACGCTGATAGCACTGTGTGCTCAAGTTCGACCTGGTATAATTTGTTTATGGAGCAACAAGGAGATGGTTACTATTAAGAGTTTTGTGAAAATCAATATAATGAGTTTTGGATACGCGGTAATGTTATCTTTCCCTATACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13481-9445 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMG01000050.1 Paenibacillus macerans NBRC 15307 PMA02S_CON000050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 13480 33 100.0 35 ................................. TGCTCAAATACTACGGCAGCGGCGACAGCGGTCAG 13412 33 97.0 33 ................................G CGTTGCTGCATCTCCTGCTGCACCTTTTGGTCG 13346 33 100.0 33 ................................. TTTGGCGTCACCGCTGTATCTGCTGCTTTAGGC 13280 33 97.0 34 ................................C TCGCTCTGACTTATCTGATGTAGTCGTGGAAGGG 13213 33 100.0 34 ................................. GGAAGTAAAACAGCATTTAGACGGCTGGACAATA 13146 33 97.0 35 ................................C TTGTGACTTATACCCATCAAGCCGGGATTGACCGC 13078 33 97.0 35 ................................C CCTGTTTGCGGCTTGATTTTGCAATATATATCAAG 13010 33 100.0 32 ................................. TGGATTTCTTCCACCACGTCTTTTAGGAGCAT 12945 33 97.0 32 ................................C GGACGGACTCCAGCGTGATGCGAAACATTGCT 12880 33 97.0 33 ................................G GTGAATCCCGTTGCCGGGAATCTTAAAAACGCT 12814 33 97.0 34 ................................A GCGGATGTGCGAGGATGGCCGACTTAAAGCCAAG 12747 33 97.0 36 ................................A GATATTTGGCGTAAGGCAGGTTGGAACCGACCTCAA 12678 33 97.0 34 ................................G CAATTACGGGACCAAACTGGCGCGGTCGTATTGA 12611 33 97.0 32 ................................A TTAATGGCAGCGTGATTGAGCTTGCCTATTGG 12546 33 97.0 32 ................................A AATGCACATGCTGCCGAAAAGGCCGATCTATC 12481 33 97.0 33 ................................G TTGATGATCTGCAATTGACCGAGATCAAGCGCC 12415 33 100.0 34 ................................. CCGTTTGTAGTCGTTCTACTTCGGATAGGAGATA 12348 33 97.0 32 ................................C ATGTACTTGATGAAAACGGCTATCTGATTTCA 12283 33 97.0 33 ................................C GAATAAACGGAACAGCTGTCGAGTATTCGACTG 12217 33 100.0 34 ................................. ACGGTTGGAATCGCAAAAAGGGCGCACACAAACC 12150 33 97.0 33 ................................A TCGATATCATAAAGAAGCTGCCGAAAGACTCCG 12084 33 100.0 33 ................................. TCCCGGACGATGTGTTTACGCTTATTCCAGATG 12018 33 97.0 36 ................................A GGAATTAATTAATTTTGCTGACAATGAAGGTGTAAT 11949 33 100.0 34 ................................. GCCGGCTGGTGGTTAAACATCGGGGCGGCAAGGC 11882 33 97.0 32 ................................C CATAAGCCTTGATAACCCTGTCTTCCAGATCC 11817 33 97.0 36 ................................G AACACGACGGATCGCCGTCACTAGGCGATGCCTTGG 11748 33 97.0 32 ................................A TCGTATTATTTCGCCTCCTTAAAGATTCCCGC 11683 33 97.0 33 ................................C CCGTCCATCCTTCAAAACATAACGCTTGATGTA 11617 33 97.0 33 ................................C CCCGCGGAAGCACCCGTAGCCGCTTTAATTTGG 11551 33 100.0 35 ................................. TCGATTGGGTCAAGGGAGAGTATCTGACCCCGAGC 11483 33 100.0 32 ................................. AAGCGTCCGATCCAAATTCCCTCTTCCATCAT 11418 33 97.0 33 ................................A GGGGATCGAAGGACCGAACGCTTTGAGCTCCAG 11352 33 97.0 34 ................................C ATCCGTCCAACTCCTGTCTAAAAGCGCATAAAAA 11285 33 97.0 33 ................................A GGAAATTATCCGCTTTACTGGACTGCCGGTCAC 11219 33 97.0 35 ................................C AAGTTATCTTACAAAAATTTTTAGCAAAATTTATC 11151 33 97.0 35 ................................A TCGCGAGTTCGTCGGCCACTACTGCCATAGTAACC 11083 33 97.0 34 ................................C CTGAAACTCTGCATATGCTTTGTCAAAGGCTTCC 11016 33 97.0 36 ................................G GAAAATGCTGGAGCAATTAAGGGCGAAGCGTGGAGG 10947 33 100.0 34 ................................. GGATGCATCTGCAAAGCTGGTCAGTATCGTTACT 10880 33 97.0 34 ................................C GGTATTTGTAGCAACTTCACGGGCAGCTCTAGCA 10813 33 100.0 32 ................................. GCTGTAACTGCGCCGCCTGTACCTCTAGCGCC 10748 33 100.0 34 ................................. GAACATCCTTGTCAGCGGTGATCATCTCGACCTT 10681 33 100.0 32 ................................. CATATTTGACCATAGCCAGCCAACAACGCACC 10616 33 100.0 32 ................................. AGGCAAACCAAATAGCCAAGATAGCGGAAATG 10551 33 97.0 32 ................................G ATCTAGACCCACGCACTGCAAAAAAATACATG 10486 33 100.0 33 ................................. TGGAAAATAAGCGAAGAAAAGCGCCAAGAAAAA 10420 33 100.0 32 ................................. GGAGACGGCGCCCAGAGAACGGAACAATCACA 10355 33 97.0 34 ................................C ATACACCAAGACCCAACACTTTAGAGCCGATTGC 10288 33 97.0 34 ................................A AAAAGCACGTGGCAAAGCGGGCTTTGAAGGGGCA 10221 33 97.0 33 ................................C GGTCGGAATGATCGGAGAGCAAAAAAAATTGAA 10155 33 97.0 36 ................................G CTTCGGGAGTTGGGCTACGAAGTGGAATGGAGGGAG 10086 33 100.0 34 ................................. GTAAGCCCGCCGTGATCCCGTCCAGGTCGCGGAA 10019 33 100.0 35 ................................. GGACGAATATGCGTCGAAAGAGCCGCCGCACAAAT 9951 33 97.0 37 ................................G CGAGTACGCGCCGCAATTTAAAGGCTTGGGCTATAGC 9881 33 97.0 37 ................................C GGGAAGCAAACGGGATTGCAAAGGGAGAATCTATCCG 9811 33 97.0 35 ................................C AGTAACATCGTTTGCGAGAACAGTTCCTCGAAATT 9743 33 97.0 35 ................................G TTAATCTCAAAATCTTTGTGGTCCCGAAACTTCTT 9675 33 97.0 34 ................................G GGACGTTGAAGGCCGAGTAAAGGCTGCTGCCCCG 9608 33 97.0 32 ................................G CCGCTGGGAATTATCCTGCGGCTTTTTGCTTG 9543 32 84.8 34 ........-..C.C.......A..........C CTATGTCTTGAAACTATTTTTAAATGAGCTCTAT 9477 33 75.8 0 ....T....C.C..C..A.........A...AA | ========== ====== ====== ====== ================================= ===================================== ================== 61 33 97.4 34 GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGT # Left flank : CGACGAATACCCTCCATTTCTGTGGAAGTAGGTGATTATGAATGCTGGTATTGATTACTTACGATGTGAGTACGGTGAATGCCGCGGGACAAAGACGGCTTCGCCAGGTTGCCAAGGCCTGTCAGAATTACGGGCAGCGCGTGCAGAACTCCGTATTTGAATGTATCGTAGATGCGGCGGAATGGGCCGCGCTTAAAATTAAGCTGATCGAATTAATCGATCCGGAGCAGGACAGCCTGCGATTTTACCAGTTGGGCAACCAGTATAAAAACAAGGTGGAACATGTAGGTATCAAAGCCTCTCTTGATTTGGAGGGGCCTTTGATTTTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCAAAATGATTGCATTACATTTGAATAATAGTAAAATAAATCCATTCTATTTGTTTAAAACTAGTCGGAAAATTAGATTTTAATACAGAATATGTAATTTATAATCCATATTCTGTTAGAAATCGGA # Right flank : CGTCCAGCAGAATCGGGAAAGGGCGAGACAGTATTCCAGGAGGGCCATCCCCCTCCTCGCACTTAAAGTAAGGGTTGAACAAGCCGCTAGAGCAATTTACTCCGGCGGTTTTGTTAACTTATAAATCACGGAAGTCAATCTCAATTCCCGCTCACTTGAACAACATAGCCGGCCCTCGATTCAGCAAGTCTGTTTTTTAAAACATAATAAGTAGGTTTATCGCATTCCGCAAAAAACAGGTATCCTTTTAAATAGATTCAAAGCAGGTATAATTACGGCAAAGGAGACAGATCGCATGTTGATCAGGAACGTATATCTGCGCCTGTCGGTCAAGTGGAAGGTCATCCTCATTTTTACCTCGCTGTTGGTGTTCATGAGCGGTTTATTTATCATTGGCTTTAATTACATCAACAAGCTCTATGATCGCCAACTGCTGCATAGCTCTTCGGAATTGTTGAACCTATACTCTACAAATATTGAGAATGAACTGCGCAAGATCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22663-21899 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMG01000050.1 Paenibacillus macerans NBRC 15307 PMA02S_CON000050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 22662 32 100.0 37 ................................ TTCCTGCATCCGTAATCACCTCGCCTCCAAGGTAACG 22593 32 100.0 33 ................................ AGAACAACATCAACAACTGGATAGGCCGGCGGA 22528 32 100.0 33 ................................ CGAAGCGGTTGCGCGGGAAGACCGCCTTATGCG 22463 32 100.0 34 ................................ AGCGACTTGGTCATGAAATTTCGGAGCTCTGCGC 22397 32 100.0 37 ................................ ACGCCGTTATTCCCGGGACTTACGAATTTCGGGGCCA 22328 32 100.0 33 ................................ TTGAGTTGGTCGAATTGGTCGCGCTGTTCCTGC 22263 32 100.0 34 ................................ GGGTTAGGCAGGGCAAAGGCTGAGGCGGAACGCG 22197 32 100.0 36 ................................ CCTTGCGCAATATCCCACGCGCCCGAAACCGTCAAC 22129 32 100.0 34 ................................ AAAGACTTGATCTCTTTTAGTTGGGTTAATTGTA 22063 32 100.0 34 ................................ TCCGGGCACGCCGGACGTTGAAACGTAGCAAAGT 21997 32 100.0 35 ................................ ACGGCGCCGTCCAACGGATTATAAGCGAAGGTCTC 21930 32 81.2 0 ......................AA.AGCG... | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.4 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Left flank : AGCTTAGGCTTGCAGCTAGTCGTTTGGGTTTTTCATGAAATGATTCTCTTTTGCTATCCATTCCTCTAAACCTTATATTGAGATATAAAAGGCACCACGTAGGGTGTCTTTATCGCTTTATTTTGGTGCTTTCTGCTGTCTTTTTAGTCTCATATTGGTAAACGAGCTCCGTACAGGTAATAAAAATGATCTTTTCTGTGTATGGCTAGAAAAATGAGGTTAAGATTTCATATTCAATCAAAAATATTTGCGAAAAAGGTTTACCCTTAGAGTAACTGTGAAGTAACATTTCAATATACATTGTTTGTACTTTAGCTCAACTCCATATTCGGTGCGAATATAAAGTGAACATAAAAATCCCGGGGGATTCGCACCAGATTAATCGTGCTAAATACCCTTTTTTTCAATAAATACCCATATATAACTTTCAAAAATCCTTAAATTTGGGTTTATATAGATAATTAACTCTAAGATTTTACTAATATATGTTAAAAAACGCT # Right flank : GGCGCCTTCCTTACAGAGTTTATAAGTCATATCTCAATGGACAGTCCATACTGGGCTGTCCTTTTTTAGTTGAAGCTGTACTTTGTTGATATGGGGGCATAAGAGCATATGATAATTCTCTAAACTAAGATGAAAGTAATATTACCCAGAAAATTGTAGAATATTGGAAGGAGATTAGAGGGGGGGTGAAGAAATAAAAAAGTTGTAGTTCTTTAGGCGTGTTTCAAGCTTTAAACTAGAGAGTCGTTTGGATTATTTTTCAGCGACAGGAGGCAGGCAATGGAATACATAGCCCATATACGTGAGAGTGACCGGGAAAACCAATTGCTTGAAACGCATTTGCTTGGGGTCAAGAATTTAGCCGAATCTTTTGGTGCTAAGCTTGGAATCGGGCATATTACCGGCCTGGCTGGAATCCTTCATGATATGGGGAAGTTCACGAAGGCATTTCTGGATTATCTCATCGAAGCGGTGAATCATCCGGAGGCTCCGCCAAAGCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3580-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMG01000014.1 Paenibacillus macerans NBRC 15307 PMA02S_CON000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3579 32 100.0 33 ................................ ATCGTCTCCCTTATTTGTCGTATGTACGACTTG 3514 32 100.0 34 ................................ AGCCCGGCAACCGATGGAGGCTATTTGGCGACAG 3448 32 100.0 35 ................................ GGTTAATCCGGAAGCAATATCACAACTGGAACGAA 3381 32 100.0 35 ................................ GCGTCAGCATACAGCAGTTCGGACGCGCGGTCCCA 3314 32 100.0 36 ................................ GAGAATGGGCGCGTTCCGTTCGAAGTCCCACTCGTC 3246 32 100.0 35 ................................ TTGCGCGGCAATAGGGGAGGCGTATGACAATGAGT 3179 32 100.0 36 ................................ CGACATATGGCATTATTTGATGGGGCAAGGATTTGC 3111 32 100.0 34 ................................ CCGTAATGCCGGTTCAAATAGCACATAAACCTCG 3045 32 100.0 37 ................................ CAAGTAGCCTATCGCCTGCATCTGTGCAGGCGTAAGC 2976 32 100.0 35 ................................ GGGGCATTTCGATCCCATCCCCTTACCAACCATAA 2909 32 100.0 34 ................................ AGATCATCGACGACATAGGCGGTGAGTATGATGG 2843 32 100.0 38 ................................ GGAGCAGTTGCGGCGTCAGGTGGTCCATCTGCTCAAAA 2773 32 100.0 36 ................................ GGATACTTCGGATAAAGGGTACACCTATACACCCGG 2705 32 100.0 35 ................................ TGGAGAATGAACTGTCAGCTCCAGTTTTGCCTGAT 2638 32 100.0 35 ................................ GAAACCGAGTGTACCGGGTAATTTCGGAGTCGTAG 2571 32 100.0 37 ................................ AGGAAGGACTAAATCCTGCGGGTGTTTAAGGAGACAA 2502 32 100.0 34 ................................ TTTGACTGTGGTGATAGCTACTCCAGTGTTTACA 2436 32 100.0 34 ................................ ACGCGGTTTGCAGAAATAGCGATCTTCCCAGTCG 2370 32 100.0 34 ................................ TCCAAACTCATGAACGGCTTGCTGTGGCTTCTCC 2304 32 100.0 34 ................................ GCAAACGTCATTGTCCCCTTTTTGCAGTTCTTCG 2238 32 100.0 35 ................................ CAAGCAACACTCATTAAGTTTCTCATTCCGATCAT 2171 32 100.0 35 ................................ ATCAAACGGGCGTCTATGGGAAAAGAAATCAAAAT 2104 32 100.0 35 ................................ GATTTGATTTCGAGACCAACGCGAATCGTCCGGCC 2037 32 100.0 34 ................................ CCGACTTAAAAATATACCCTGTGTTCTCGATCAT 1971 32 100.0 37 ................................ CGAAGTCCGCCGGCGGAAGCTGCGCGAATTTCTCCGC 1902 32 100.0 34 ................................ CCGGAACCGCCCCACCAGTCACTGATTGTCTTTT 1836 32 100.0 37 ................................ AGCTGATTCCGTCCGGGATGAAGTTCCCGAACCGAAG 1767 32 100.0 36 ................................ TCTGAAATACTTGTTATCGCAATAATATCTGGTATA 1699 32 100.0 35 ................................ TTAATAGGAGGACTTATGTATGAATCTCGTACCGA 1632 32 100.0 33 ................................ AAGCAGCCTTAGAAATGCTGCATCCGACCGGGA 1567 32 100.0 35 ................................ CGTAATTGAATCCGTTTATGATCAGCCGATTGTTC 1500 32 100.0 35 ................................ CTAATTGGGAGAAACACCAAAATACTGAGGCTCTT 1433 32 100.0 34 ................................ TAATAGTTTCACGCGCTCCCCTCCCTTTACTTCT 1367 32 100.0 33 ................................ GCTTGATTCTCTGGACTACCGGGTAAATGATCT 1302 32 100.0 35 ................................ CTCGATCTGTTTGGTCATGGCCTGGGCGATTTCCT 1235 32 100.0 35 ................................ AGAATGGCGGCGTGGTTCCGGCAGATTTGGCCGGT 1168 32 100.0 36 ................................ ATCGTGTCATGCACCTTTAAGACAGTGCTGACCAGC 1100 32 100.0 34 ................................ GTCAGTGCAGGCAATCATCCAGTTTACGGGCATG 1034 32 100.0 38 ................................ CGGCGATAGCGGAAGAGGCGGTTTATCCGAAAAGGATC 964 32 100.0 35 ................................ CGTACGCCCCGTATACCTATGTAGAACCAGCAAGC 897 32 100.0 36 ................................ TCTAACGGCAAAATCCGAACGGAAGTATTCGAAGCA 829 32 96.9 33 ......................A......... CCGAACATGTTGCCCGGCATCCGTATGCCGCGA 764 32 100.0 36 ................................ AAAGGTCGTCAGGCTATCGCTGTACCAGTTCTTGCC 696 32 100.0 35 ................................ GTCCTTAGCGTGGCCCAGTTGCTTTCGGATGTCAT 629 32 100.0 36 ................................ GAAAGTGTTCGGGTTTATTGCTGACGATGTAGTCCC 561 32 96.9 36 ............A................... TTCGATCAATTCTTTAAAACTCCAAAACCGTATTGT 493 32 93.8 36 ..........C.A................... TTTATCCGGAGCACAAGAAATTTCAAACGATAATTC 425 32 90.6 0 ..........C.A.........A......... | ========== ====== ====== ====== ================================ ====================================== ================== 48 32 99.5 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGTAAAGCATTTAACTGGCCGAAGCCAAAGAATTCCGAAAAAATAAACGTAGAACAGACGGCAGCAACGGAAATTGAGGACATAAAGAAGCAGTACGATTTGCAGAATTATCGGGTGTGCGTTAACCTGGACAGCAAGAGCGGGGAAAAAGAAGAAATCTCGCTGCTTTCTCTAACGTTTCAACTAAATCAGCTTTTGATGCTGATTAATAACCCGATGTTATTCCCACATAAAGCCTATGTAGATATGTTTAACGAGCGGTATACGAAGGAGTAGCCTTGGAGCATGAACCGGGAAGTAATCGTTCTCTAGCAAAACGGAATATAGTGGCGGTGCGAACCCCAAGCTCACATAAAAATCCCGGGACATTCGCACCTCTCGCCCAGCGCGGGATTTCGGGATTTTACGTCAATACTTACCCCATTTATTAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTTCAAACCCTTGCTGGATGCGGGGTTGAAATGATCGCG # Right flank : GAATTTTACGCTGCTCATTTCTTCCATTTTGTGTCGCTCCCTACGAGGGGCTAGAATGGGATTTACTTTCCCAAGAAAGAAAAAAGACTCGCTAACTGGGTACGTAAGAACGAGCCCATAGGTTAATTTTGTACACATGAAGGAGAACCAGCTCACCTACTGTCCAAAAATTCTGAAGAGAATTTCTGGACAGTGAGCCCTTTTACATAAAAATAAGGAATTGCATTTTCGTATAAATTTAAAAAGAAGAACTACGAGTCTGCCTAAAAATCGATGCTTGACTGACGGGTTAGCCTCGAATGATCGATCCATCCGAAATATTTTCTACGCTAACGGTTGTCAGCGCGCCTATTCGGCCGAAAATCGGGGGGTTTCTTTTCTAAGGGTTGTATAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15641-12140 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMG01000014.1 Paenibacillus macerans NBRC 15307 PMA02S_CON000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 15640 32 100.0 34 ................................ CAACAATCAGGTCTTTTACGAAGATATCGACGAG 15574 32 100.0 36 ................................ CGCCAGACTGCACCTCCACCGTGGTTGCGTTATACA 15506 32 100.0 34 ................................ ACAGGACGGGATGGTCAATCTCGCACCAATAACC 15440 32 100.0 34 ................................ ATTAAATCCACCTCACGTTGTGCGAACATTTGTT 15374 32 100.0 34 ................................ GTTACGTTATTCAAACGGGGCGGATGGAGCCGAT 15308 32 100.0 36 ................................ CGATGGATACGCCAATCATCACGCGCTGGGCTGATC 15240 32 100.0 34 ................................ GGATCATCTTTCTTGTAGTAAACCGGCACTGCGA 15174 32 100.0 34 ................................ ACCTGATCTTGGTATATGGTGCCCTGGTACAAAT 15108 32 100.0 36 ................................ TTTCAGGACGAAATGCTTGAAAGACTTACACCAGAA 15040 32 100.0 33 ................................ CGAAGTTTTATGCATTTTCGCTGCATAATCGTA 14975 32 100.0 36 ................................ CTCACAATCAACGTGTAAAGGGCGGTGAAATAGATG 14907 32 100.0 34 ................................ GCCGCTTAGTAGGCGGTTGAATACCGCGCGTGCC 14841 32 100.0 34 ................................ AATAATGCTGCCATTGACGAACGTCCACTCGTGC 14775 32 100.0 36 ................................ TGCCGCCACCCATAGCGGATTAGGAGGATAACCATG 14707 32 100.0 35 ................................ CGCTTCTGACCGATTGTATGTTCTAACCGTCTTAA 14640 32 100.0 36 ................................ TACGCGGACGGCGTCGGCCTGTTTCGCGGCGTTATC 14572 32 100.0 34 ................................ TAAAATTTTCGTGCCACGGAAAAGGGGCGGGGGA 14506 32 100.0 33 ................................ TTGATACCAATATTACACCATAATTACACCAAT 14441 32 100.0 39 ................................ AGTGATCTCGTCCATCGTCTCCTTGGTCATGTCGAACTG 14370 32 100.0 33 ................................ TCCCTTGGCTCCCTTTGACCCCTTCGGAAGTGT 14305 32 100.0 35 ................................ CGACGCGATCCGGATGAACGACTTTTATGACCAGC 14238 32 100.0 35 ................................ TGTCCCTGTGCAGGAAGCCGGGAGGGTTTGCCGTC 14171 32 100.0 35 ................................ ACGTGGATAGAGTTTATCTTTGATCTCGTTATAGG 14104 32 100.0 37 ................................ ATCTTTGAATGCGGATATTAACCTTGAAGAACACATC 14035 32 100.0 35 ................................ TATATCCGTATAGGGGCTAGCCCCGCTCACGCTTT 13968 32 100.0 35 ................................ ATGATTTTGCCGCCAGTTACGCGGATAAAGTAACG 13901 32 100.0 34 ................................ AATATGGTTGTTTACGGCGTTTATGGCAATCAAG 13835 32 100.0 36 ................................ CAAGCGGAGCGCGACCGGATGCTCGAATTACTTGCC 13767 32 100.0 33 ................................ CTCAAACTTAGCGTCAAGTTCTGCGGACATGTC 13702 32 100.0 35 ................................ CAAGACAATGCGGCTGATTGTAAACCTCGTAAATC 13635 32 100.0 34 ................................ CAGCCCGCTATATGGATTACGGTTTGGCAAAGGC 13569 32 96.9 33 .............C.................. TTCGGCGTTTGTGCAAGAATATTGAACTTGATT 13504 32 96.9 36 .............C.................. ATCTGATTTCTTTATCGGGAGCACCTATCGAGACAA 13436 32 96.9 37 .............C.................. CGCAGCGCTCACAACGCCCTCCAGACCGTTCTAGTGC 13367 32 96.9 34 .............C.................. TTGAGCACTCTTTTGGGATTGTGCTTTGCGTGCT 13301 32 96.9 33 .............C.................. TTAAGAAAGTCTTAGAGGAATCGTTGGTGCACA 13236 32 96.9 33 .............C.................. GATGTAAACGGCCCTGCGCTCATCATGACGAAT 13171 32 96.9 33 .............C.................. GGTTTGTCCGCCATTTGCAAACGCTTCCTTATA 13106 32 96.9 33 .............C.................. TACCATGGTATCACCCCTCTATAAAATCAAATA 13041 32 96.9 38 .............C.................. TCGACGAGATCGAAGAGAAAGCGCCGGAAGCGCCGCAG 12971 32 96.9 35 .............C.................. ATCGAAAATAACCACGCTGCCATGCACATCCGCGA 12904 32 96.9 37 .............C.................. ATTGGCATGTTTTAGCCCTCCTTAACCTATAGCAACG 12835 32 96.9 34 .............C.................. GTCGATATTGGCCGTGATGTTTGTAGCTTTACCG 12769 32 96.9 34 .............C.................. TGATTTGGCCAGCAAGAAAAAGTATTCATGAGCC 12703 32 96.9 35 .............C.................. TTCTGAAGATCATTACCCTCATGTGATTGGAGTGT 12636 32 96.9 36 .............C.................. GTAGCTCTAGGGCTAATTACACTGGTAGCCAAAGTC 12568 32 96.9 34 .............C.................. AGGTCAAGCCACACCAAACCTTTGCTTAAACATC 12502 32 96.9 35 .............C.................. TTGCCGGGATCATTGTTTTTTGACCTATTACACCA 12435 32 96.9 33 .............C.................. GTTAATAATCTTGATGTTGCGTTGCTTGAGATC 12370 32 96.9 35 .............C.................. GAGTAGGGTTTCCGCACATTACAGCTTATTGAATT 12303 32 96.9 33 .............C.................. ATCCATACTGAATGCACCGAGAAAGTCTGTATA 12238 32 100.0 35 ................................ GCCGACGGTCGCATATGTATGCCCATCCCCAAGCG 12171 32 96.9 0 ........................C....... | ========== ====== ====== ====== ================================ ======================================= ================== 53 32 98.8 35 GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Left flank : CGCCAAATGATCGAGGAATTAATGGATTTATATAGCGGCAAACCGGCCTTTTTGGACGAGTTGAGCCAAATCCATGACGGGTTAAATTAATGAGATCCTCCCTTGGGGAGTTTTTTGTTCAATTTAGAAGTCGTCGCCGCTTGGCTATACGGCCAAATTGACCGATTATTCATGGATGGATATTAGGAAATTTGTGGGGGAAAAAGGTTTTTGGGCGATTGGGATCGAAATAGGTGCGTAAGGCTATGTACCTTTAACGAGAAAGATACGACGATGTAGCCTTGAAGTAATGAAGAGTAATCAATTGGTTGGTAAAAGCGGGAAAGAACAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTGCGGGATATTGCGGCTTTGTTTAACTTGTTTTTAAACCATAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTTTGCTGGATGCGGGGGTTAGGTGGACGGA # Right flank : ATGTAAAATCAATACCAAGTTGCCCCTTAAGATAACGCCACTCTCAAGCCTCAGCGTTCCTCTCTGCACGAGAGGGTGGAATGAAAGAAGGTCTGATTCTTTGCGATTACCAGGATCAATAGCCACTTCCCACATAGGAGTATCTTAATGAAAATTGCCTTTGGTTAAAGGCTTTTTTTGTACACTCAAGGAATGTGGAAATGTTCGCGTGTTTAATGTGGAGTGATTTTAGAGTGAAGCCCCCTCCTTATCAATTGCCTAGATGATTACTCCTTCGCTTAGAGAGAGGAGATAGATAAAGTTAAGGGAGGTTATGGAATTAACGGATTTATAAACGGCAAACCGGCCTTTTAGATGAATTGAGCCCAATCCACGATTAGACAAATTATTGAGCTCCTCCCTCGCGGGGGGAGTTTTTTGCTTAACTTGGAAATCACTGTAGAAATCCGCCCACAAAGGCAATCACAACCCTCAGATTCGTTTCTCACTCTTGCTTTAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Alternate repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //