Array 1 2672648-2673652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025633.1 Klebsiella pneumoniae strain HS102438 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2672648 28 100.0 33 ............................ TCTATGATGAAGAGCGCCTGTTTGCTGAACTCA 2672709 28 100.0 33 ............................ TCTAAGGATGGCTCGCACCAGTTTGGCGAGTAC 2672770 28 100.0 33 ............................ TGCAACTATCAACGGGATGCTCCTTGATGTATG 2672831 28 100.0 33 ............................ TATGCTGAAGCCCTGATGATAAGCGACCGCCTT 2672892 28 100.0 33 ............................ TATCATCAAGGCCGAGACTCAGGCTGATGTATG 2672953 28 100.0 33 ............................ CCTATCATGCGCTTGTTGCTGCATCTTCTGAGC 2673014 28 100.0 33 ............................ TGAATTAGTGTATAAAGCAAGGCGTGACTTTAT 2673075 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 2673136 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2673197 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2673258 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2673319 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 2673380 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2673441 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2673502 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2673507] 2673564 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2673625 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.3 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2682406-2684569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025633.1 Klebsiella pneumoniae strain HS102438 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2682406 28 100.0 33 ............................ TCAGTTACTGTTGCTGCTCCAGTAATTTCTCCA 2682467 28 100.0 33 ............................ TCAGATATGCATGCAACGATCACATCGTACAGC 2682528 28 100.0 34 ............................ TTATTATTGTTGACATCAATCCAGTAATCACCGG 2682590 28 100.0 33 ............................ TGATGTTTTCCCACTCATCCTCTTCAAGGCCAC 2682651 28 100.0 33 ............................ TGCCCGCTGCTACACCTGCGCCGCCGACCAGTT 2682712 28 100.0 33 ............................ TACCTACGCAAAGGCTCTCAGGTGTATGTAGAA 2682773 28 100.0 33 ............................ CATTGGTAAGACCGTGGCAATCAGCCGCATTGC 2682834 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAACGCTGGTGGGCG 2682895 28 100.0 33 ............................ TTTATCCTTAAAAGTTTTCGATGTTCTGTTGAG 2682956 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 2683017 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 2683078 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 2683139 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 2683200 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 2683261 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 2683322 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 2683383 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 2683444 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 2683505 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 2683566 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 2683627 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2683688 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2683749 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2683810 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2683871 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 2683932 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2683993 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2684054 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2684115 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2684176 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2684237 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2684298 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2684359 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2684420 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2684481 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2684542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 36 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //