Array 1 27699-26739 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPL01000008.1 Haemophilus haemolyticus strain C2001002324 C2001002324_S2_ctg_953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27698 32 100.0 34 ................................ TCAGAGCGTACAACTCAATATTTGAATAACATAG 27632 32 100.0 33 ................................ AACTACTCAACAAGTAACAAGCCAATTATTTAA 27567 32 100.0 34 ................................ GCCTGCAGCTAAATGATTGGCTCTTACTGCTCCA 27501 32 100.0 34 ................................ TTTGTTTTTCTGAATCGAATAGCCACACAATCCT 27435 32 100.0 34 ................................ ACCAGGTGGAATCCACTCAAATGATTTGGAACCG 27369 32 100.0 36 ................................ ATCTGAGTCTCACCGTACTCGAACTCACCTGCCTCG 27301 32 100.0 34 ................................ CATTTGGTCGCGCATTGCAGCTAACACTTCATCA 27235 32 100.0 34 ................................ TTGTGTTGCCTGCGGTGTATAGCGAAAAGTCATC 27169 32 100.0 34 ................................ AATTAGCCTTGATTTTATCAAGAAAGTAGGTGGT 27103 32 100.0 35 ................................ CCCAATCTCTCGCACTCTGTTGCAACCGTGCTATG 27036 32 100.0 34 ................................ TATCTCCATTAAAACAATAGGCGCTCACTTGGAA 26970 32 100.0 35 ................................ TCGGTGATATTGTCGTCAAACTTCAAGCGTTTCAG 26903 32 100.0 34 ................................ AAGTTGCCGAAAAATGTGTGTTGAATTATGGCAA 26837 32 100.0 35 ................................ CACGCTTGTGCCTCTTTGGTTGGATCAATCCATGG 26770 32 93.8 0 ................A....C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.6 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGTCAAGCGCGATTACGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGATCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTTTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACTTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTCGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : TGTAATTACAATCAAATTACCGTCATTAATACGGAAGCTGCGTATTTAAGTAAGGATGAAAGAAGATAAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATACGATTTGAATTCAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCGAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACGGTTTCCCAATGTACGCCTTGTGCGATTAAATCATCAACAACGGCAACATTATGCGCTTCACGCCAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139456-138993 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPL01000001.1 Haemophilus haemolyticus strain C2001002324 C2001002324_S2_ctg_939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 139455 37 100.0 35 ..................................... ACGTTCTTCTGTCTTAATTACTTCTTCATGATTAA 139383 37 100.0 36 ..................................... GTTCATCATTCCAACGATTAGATTGACGAACTAAGT 139310 37 100.0 35 ..................................... GCAACTGCTGGTTCAGCACTATCAAGGATAGTGAT 139238 37 100.0 34 ..................................... TTATGCTCAACGCCCCATTAACTAACGATTCACC 139167 37 97.3 34 ..................................G.. TAATACCATTTTTTCTTTTGACTTGCCCAAAAAC 139096 37 97.3 30 ..................................G.. TTATCAGGCCAAGGAGCGGACGTTGTCCAC 139029 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTACCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCGATTGGTTGAATAGGAAAAGAAGGTAGAGAGAAATGATGCTGTTCTGCGAATTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATCGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATAAAGTATAATCAGATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTAGTGTAGTGAGGACTGGCGCATCTGAAAAACTCTGCTAAAATACACCGCACTTTTGGCTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATGCCCAACTATTCAAACATCAGAAAAGTTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCGAACACCCTGCTGCA # Right flank : TAAGTTTTTTACTTCTATCTTAAAATTATTACTAGCTTTGGCATTCCTAAAAATCTCCGTTAAAATAACCGCACTTTTATCGTCTCTTCAAGGAAAGCAATATGTCCGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGCGGGCAAGTTGTAGCTCAAGCATTATCAGCAGCAATGCAGGTGGCGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCCCCAGGAGACAGCCAATATCCGATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTGAAAGCTATTCAACATAAAAATACAATTTGTCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGTTGGCGAGCCGGAAGACTTTACGGATGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 151151-151617 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPL01000001.1 Haemophilus haemolyticus strain C2001002324 C2001002324_S2_ctg_939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 151151 37 100.0 37 ..................................... AAGGTATTAACGGTTTAGTTAAAGCAGGTTCTATTTT 151225 37 100.0 33 ..................................... TCCAAAGCGTTTTTAATTCGTCGTAACCTTTAG 151295 37 100.0 33 ..................................... AAAACTCTACGCTTGAGCATTGATCATCACTAT 151365 37 97.3 34 ................C.................... AGTTCCGCCACACGCTTAAAAATTAAATCTTCAC 151436 37 97.3 37 ................C.................... ATTGATGCTGTAGTAGCTGTAGCTACTGAACGAACTG 151510 37 94.6 34 ............C...C.................... GAACGAATTGCGTTGTTGATACCAAACATAATGT 151581 37 75.7 0 ............C...C...CTA........GT.C.T | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.0 35 GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Left flank : TATTATTTTCCAATTTTAGGAGTAAAATATGGCTCAATATTTAATAGGTTATGACATTTCAAATCCCAAAAGACTACAACGAATTTATCGTAAAATGACACATTATGCGACGCCAATTCAATACAGCATTTTTTTATTAGATGGCTCAGAGAAATTTCTCAAACAATGTTTGGCTGAAATTATGTTAATCTTCAATAAGAAAGAGGATGATTTAAGAGTTTATCCTTTACCTACCAATACAACACAATGGCGACTAGGAAAATCAAGTTTGCCAGAAGGTATTATTTGGACAGCCTTGCCAACAAGCTTGACATTATAATGCTAGAAAAAATCAAAAATAGAGGTAAAATAGGCCGCACTTTCGATTGGTTGAGAAAGGAACAAAATATGTAAATTGTTTATTATTTACTCAAATCAAGAGTCAACTCCTTAACCTTCCAAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGATTCTTGCCTCCAGCATACCGCTGCA # Right flank : TCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATTGACCGCACTTTTTATTTCTGTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAACTTGGGGAATGCACCAGAAATTCGGGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCAACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCACCGTATTGTGCTTTATCGTCGATTGGCCGACATCGCAGGTCAATATTTACGAAAAGGATCGAAAGTTTATGTTGAGGGAAAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATAGCCTTGCTCGAAAGGGATTGAGAC # Alternate repeat : GTCGAAAGACATAGCCCTGCTCGAAAGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 155651-156618 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPL01000001.1 Haemophilus haemolyticus strain C2001002324 C2001002324_S2_ctg_939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 155651 37 100.0 34 ..................................... ATCGTCGGCGCATCAAATGTCTCCCGCTCACCAC 155722 37 100.0 33 ..................................... TCACTCGAATGCCGAAATACGTCCGCAAGAAAT 155792 37 100.0 36 ..................................... ACATTCTCGTTATTCCAGCGTTCAGATTGTCTTACT 155865 37 100.0 36 ..................................... GGTTGTTTTCGATTTTGTTGATTAAGTTTTTCATGT 155938 37 100.0 33 ..................................... TACTCTACTTCTTCAGCTAAAATTGTATCTTCT 156008 37 100.0 33 ..................................... TTTAGCCACTCTTGAAAATCTGCTGGTCTTTGA 156078 37 100.0 36 ..................................... TTCTATAACTAGATCCGATTTGATTATATTTTGAAA 156151 37 100.0 33 ..................................... ACACTGGATCTTTATAGTTCACTTTTGGGTTTA 156221 37 100.0 36 ..................................... TCTAAGGTTGTCTTCTGATGTTCAGACATGCCCATC 156294 37 100.0 34 ..................................... AGTAATGACCCTCTTTTGTTTGACGATTAGCCAG 156365 37 100.0 35 ..................................... CACTGGTGCACGGTTGGTTTCAGACACTTCTACGT 156437 37 100.0 35 ..................................... TTTTCAAGAGCTTGTAGTTTTTCATTGTAAGTAGT 156509 37 100.0 37 ..................................... GATGTTGTCCACATCATAGCTTGTGGCCTTAGATTAT 156583 36 89.2 0 ....-...............AC..............T | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.2 35 GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Left flank : CGGATATTCCTTTGCATATTTTAGAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGAGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCCTCAACTGAAATTTACAAGCCTTACAAAATCCCCATCAATTGATTTCTGTATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATATTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGCTAGACATTCTAGAGCTAGAAAAAATAAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTGCTTATTATTTGCTCAAATTAAGAGCCAGCTCCTTAACCTTCCCAAAAAATTGGGAAGTGGGTCTGAAAGGCCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : TAGATAGAGATTTATTATTGATAAAAATATCGAAAAGCTAATAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTACTAAGTTATCGGCTAAATTTAGCCGAACTTTTATAAATGTTTCACTCTCCGCTTCACTTCTTCCTGTTTTCCCGCATTAAATGGGCGGGCATCAGGGCTACCTAGATAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAAACAAAGCCTTTACTAGTACATTCAAATTCGCCAGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTTCCGTAGTAAGGCACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCACCGTAGCAAATAAAACCGCCACTAGCGAGTGGGGGATATGCCATTTCGAAATCTAGTTTATCGTAAGGATTCACTTTCTTTTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //