Array 1 64307-63789 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTME01000013.1 Escherichia coli strain YH17188 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64306 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 64245 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 64183 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 64122 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 64061 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 64000 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 63939 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 63878 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 63817 28 75.9 0 .A.........C..T....T-.G.....C | C [63792] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91561-90007 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTME01000013.1 Escherichia coli strain YH17188 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91560 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGACGTA 91499 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 91438 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 91377 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 91316 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91255 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 91194 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 91133 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 91072 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91011 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 90950 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 90889 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 90828 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 90767 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 90706 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 90645 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90584 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90523 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 90462 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 90401 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 90340 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 90279 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 90218 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 90157 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 90096 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90035 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //