Array 1 1949349-1946816 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1949348 31 96.8 37 A.............................. ATAACATTAGCAATACTGTTTTAGACAGTATGCCTGG 1949280 31 100.0 37 ............................... AGGCCATTTCAGCTGCCATGACCATCATCGGAGGTCG 1949212 31 100.0 36 ............................... ATTATGACCAATTTTGCACCTGCCCAGCTGCTTTGG 1949145 31 100.0 37 ............................... ATGAAGATGTTTATAGAAGGACTGGAAAGCTATCGGG 1949077 31 100.0 35 ............................... TGTCATCGCAACCGAAAAGAAAAGCCATCGAACCG 1949011 31 100.0 36 ............................... TACTTCCCGGATAACCGCCGACGGGACCCGGCAGAG 1948944 31 100.0 36 ............................... TCTCGCCTATTGTCTCGTGGGTCACCGTTGATATGG 1948877 31 100.0 38 ............................... TCAAGCATATTTTTTGTCTAACTTAATCAGTCCATATG 1948808 31 100.0 37 ............................... CGAACCAATACTTCTATATTTCCGAAATTTTCGGAGG 1948740 31 100.0 39 ............................... ATTTCCCGGCCTCGAAATCAGCCAGTATCTGGGCTCTAG 1948670 31 100.0 38 ............................... TGATTATAACGGGAGGTTATAATCAGAAGTAACAGGCG 1948601 31 100.0 38 ............................... CCTGCTCAAAGGATATAACATAACAGTTTATATCTTTG 1948532 31 100.0 35 ............................... TGTTTTGTCATACAAATTAAGCAGATTTTCTGCTG 1948466 31 100.0 36 ............................... CCTCCATCTGGTTCATATTTGTAAGAGTGGAAAATG 1948399 31 100.0 37 ............................... AAGATATACTTTTTCAGGCATAAGTTACACCCCCAAG 1948331 31 100.0 35 ............................... TTTGATGGGATTGGTAAATCCAGAAATCGTATCCG 1948265 31 100.0 38 ............................... TCAAGCATAAGATTATAGACGTTATAATCCAACTCACG 1948196 31 100.0 37 ............................... CGTCCAGTATTGCCCGAACCATATCAGTGTTGAACAG 1948128 31 100.0 36 ............................... AATATAATCCTTGTTGGCTGCCGTCCAGTCCGCTGG 1948061 31 100.0 36 ............................... TCGCAGTAGTTAGCCGGAAGTGTGCCACTATAGCCG 1947994 31 100.0 39 ............................... CGATACCTCCTTTTAGTCGTTGTCTCCCTGATACTCATG 1947924 31 100.0 36 ............................... CAATATGAAGGCGAACCTGTTGTCGTGCCGACAATG 1947857 31 100.0 36 ............................... CCAACGTGTCCTTGGTGTACTGCATTGCTAATTCTG 1947790 31 100.0 36 ............................... GTGCTATTTCTGCAGGATCATGTTTTCTAGGTCTCG 1947723 31 100.0 37 ............................... CCGCTTACTGCCACGCGACTTCGCAGGTTTTTTCGTG 1947655 31 100.0 35 ............................... TGGCATAATCATCTCATCATGTTCCATATACTTTG 1947589 31 100.0 37 ............................... CGGTATGAGCACGGCTACACTATGGACGGTATTTATG 1947521 31 100.0 37 ............................... ATATATGGCTCGTAGTTCATCTGTTATATTGTCATAG 1947453 31 100.0 36 ............................... CGGAAGCTGATTACATCCTTTGCTTATGACAACTCG 1947386 31 100.0 37 ............................... CTTATAACTTAACAGAGCGACTTTGATTCTGTCCTCG 1947318 31 100.0 38 ............................... TATAAGAATGACATCGCTGTTTTGCCTGGCGTATTCCG 1947249 31 100.0 37 ............................... CGCAGGGAATTATAATTTCTCCGCATTCGCCCTTATG 1947181 31 100.0 38 ............................... ATCTATGTCCTTCTTCTTATTTCCTTTATCGTCAGTCG 1947112 31 100.0 35 ............................... TGATACATAACGGTCTAACCAAGCTTCACTGCAAG 1947046 31 100.0 35 ............................... TATTAAAGGCTGCATTAAACTAAAATAGAGTAGGG 1946980 31 100.0 37 ............................... TCACTTCACTTGCCGGAGATGGGTTTTCGTACGCCGG 1946912 31 100.0 35 ............................... CATGCTCGTCCACCCAGCGGCGTACCGCGGGCCAG 1946846 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 38 31 99.9 37 TCGCACCCCATGCGGGTGCGTGGATTGAAAC # Left flank : CTTTTTCAACAAACTCACTAAGCATAGAGCGAAAAGGCCATAGGAAATTTGGTAAAAGAGAAATAGTCTTATCCTGGCCCTCGACCTTATTTTCCGCCTGACACAAATAGCGGTATATAGGTATCTGAATCTCTGAATCGGCATCTACCGCCCATCTGTCAAAATGTCCGTGCCGGTGAGGTTTACACGAACCGCAAATGGGACAATCAGCCGGAAAATCTGGAGATTTTTCGCCGTAACAGTCTAAATATTCTTTGACAGACGCTCCCAGGAAAGTTATCATAACCATAGAAACAGGACTCCTATGAGTTCTGTTTACAGGAGATGAGCTTTCGGGTGTCTGTCAGGACGTTGGCCGAAAGCTCATTTTAATTTGCTCTCCGTAAACCAGAAAATTATGCCAAGTCCCGATTCGATTAATTGGCGGAAATATCCTTCAATACCGACATATATTTTGGTCAAAATCCCAAGTGTTGCCGACATATAATTTGGGCTTTAAC # Right flank : TAACCCGATACTGCAAGATTAATGGTAATCCGCTTAATTTTATTTTTAACCATAATATCAGAGCGGGTATGACCGTTTGCGGAGGGCTTCCATTGGGCGGCATCGTCAGGAATCTTGCTGTAAAGCGGAGAGCAGCAAATCGGGGAGTCCCCGCATGTCCGCAGACGGCGAGGGCCGCCGGGAAGTTTCGTTGGCAGTAATAGCGAAACGGGAGGCGGCCATCATATAAGGAATACCCGGTGAGCCGTCAAGTTCGGGGACGCCGGCTTGCTGCCGGAGCTTAACAGCTTAGATGACTGGATGCCGCCCTGGGAAACCGGAGTAAACGGTCATACCTGCGGCAGAATACGGTGAACTAAAAGTTGAATGTGAATTTACCCAAAAAATCTTGACAGCATCCGAATGATTGTTAAGCTTGACTTTTAATTTGAATCAGCTATAATATATATACGTGGTTCAAAAAAAACGGGCATATAGTTCAGAGGGAGAACGCTTCCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1959253-1952690 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1959252 31 100.0 37 ............................... ATGTTATTTGTGTTAAGAAAATAACTATCCAGAGCAG 1959184 31 100.0 37 ............................... AGCTAAAGGCATATATGAAATCTGTCGGTGGAGCCAG 1959116 31 100.0 37 ............................... TTCTTTCCCACTGTTTCTTTTAACCACGGAGGAAGAG 1959048 31 100.0 36 ............................... CGGAAGATAAAAAGAGCAACCGCCAAAACGATAAAG 1958981 31 100.0 37 ............................... TTCCTCAGTAACTCCGTCCGGATAGCTTGGCCGTCCG 1958913 31 100.0 35 ............................... TTCCACTTCAACGGCTCATCCAATCTCTCCGGGTG 1958847 31 100.0 36 ............................... TAGACTTGAGGCTCAAAAAGCAAAAGTGACATTAAG 1958780 31 100.0 37 ............................... CATTGTCCTGTACTTGTATCATAATAAGCATTTACCG 1958712 31 100.0 37 ............................... CAGCTTGTACAATTGACGGTGAAAAGAAAATTGTTAG 1958644 31 100.0 37 ............................... AAATTAAGCAATCTCATCTTCCAAACCACCTTCCATG 1958576 31 100.0 39 ............................... AAGCTTTGATATGATGCCACTTAAATCCGGGTCCCCCTG 1958506 31 100.0 38 ............................... ACCAAGATGGCTTCCGATTTAGCCGGCGGGGTTGGTCG 1958437 31 100.0 38 ............................... ACGGAAATAAAAACCGGTGGTCATATCCTGGTTAGACG 1958368 31 100.0 36 ............................... AAGGTTGGTCCGGTAAGCTGTGTTAAAAGCTTGTTG 1958301 31 100.0 36 ............................... CGGGGCACTACACCCGGCAGGACCCCCGCAAACGCG 1958234 31 100.0 35 ............................... TTTGACAACTTAATAACGATTATCAATAAAAAAGG 1958168 31 100.0 36 ............................... TTATTTGTACGCTTACCATATTGATGCAGGCCCATG 1958101 31 100.0 36 ............................... CCTGACCATTCAGGATATGGGTCAATAACTGTGATG 1958034 31 100.0 36 ............................... TAAACGTCTAACGGATTTACGCCAAAATAAGGGTTG 1957967 31 100.0 35 ............................... ATATTAGTCAACCAAACCATTTACCATGGATTAAG 1957901 31 100.0 35 ............................... ACATCCCCCCCAAGCAAAAGGCGCTTCTTGGTCTG 1957835 31 100.0 35 ............................... GAAGTCAATATTACAGTAGTAGATAATGCGAATAG 1957769 31 100.0 35 ............................... TAATGCTACTGTAAACAACGCTATTATCAGTTTAG 1957703 31 100.0 36 ............................... CTTTTACCTTCCATTCATTGTCAATTTTTACAATTG 1957636 31 100.0 34 ............................... GTTATCGTCGAATACAAGGCAAAATAGACCGTTG 1957571 31 100.0 36 ............................... AATCGTGATGCAGTAAACTGAAATCCACCAATTCCG 1957504 31 100.0 38 ............................... CTACTTCCTGCAGCGCTTCGGCGGTGACGGAAAAGTCG 1957435 31 100.0 39 ............................... CAGAGCAGGGCAAAGATAATAAACAAGCAAGTCGCGCCG 1957365 31 100.0 35 ............................... CCCTACTGCTAACCTCATGCCTTCGCATTGGGTCG 1957299 31 100.0 35 ............................... GCTTGAATTCGTCGTCAACAAAAGCAACGTCTGCG 1957233 31 100.0 36 ............................... TTAATTATCATGCCAAGCGCTTCCGGTATCTCATAG 1957166 31 100.0 35 ............................... CATCCACAAACGGGCGAAGGTATTCATGCCATACG 1957100 31 100.0 35 ............................... GATGTGAATACGGACACGGTCTATGAATGGAAGAG 1957034 31 100.0 34 ............................... ATGATGGAAGAAGTTTTTGAAACAGGCGCAAACG 1956969 31 100.0 36 ............................... CGATAACCTTGTGTTAGTAGCAGACTTTGACATAGG 1956902 31 100.0 34 ............................... ATGATGGAAGAAGTTTTTGAAACAGGCGCAAACG 1956837 31 100.0 37 ............................... TACAGCGAATGGCGGGACGAAGTGCATAGTTTGGCTG 1956769 31 100.0 38 ............................... GCCTTCGTGCTGAAATATTTTGTCCTCGGGGTGAGAAG 1956700 31 100.0 38 ............................... CACCGAATCCGGGCCTTTTTTGACCGGCACAATCCGTG 1956631 31 100.0 36 ............................... CATTTTGGCTGCATGGAACATAAAAGGTAAAAAATG 1956564 31 100.0 36 ............................... CAGCTAATTCGATGGTATAATTTACTTTTTCTTTTG 1956497 31 100.0 37 ............................... AACAAAATCATCATTTGTGGCAATACAGATTGTCCTG 1956429 31 100.0 35 ............................... ATGCTCATATGCTTCTGGTTTCGTCTCTCGCAGGG 1956363 31 100.0 38 ............................... TTAAATGCCGCAGCTTGCACATCATCTTTTGCTACTAG 1956294 31 100.0 38 ............................... TGGTTGAAGAACCGGCAGCCGGGCCGGTGGCGTGACAG 1956225 31 100.0 36 ............................... TACTATTTTCTTCGCCACATCAGATGCTTTTGTTTG 1956158 31 100.0 37 ............................... TATGCCTGCCCTGTTATCCCTCCTGCCCTAGGAACAG 1956090 31 100.0 35 ............................... GAGACATCAGCGTCCGTGTCACAGTATCCGAATTG 1956024 31 100.0 36 ............................... CTGCACAACCTGCCGGACTGTTCCGGCAGGTAATGG 1955957 31 100.0 38 ............................... CGTAAAACCTTAGCCTTGCAACATAACCAAACTAAACG 1955888 31 100.0 36 ............................... CTGTCATTTGTGATACTTGCAAAAATCACAGCAATG 1955821 31 100.0 38 ............................... TTAAATAGTGGCTCAAATTTTTACCTTTGCCCAGGCTG 1955752 31 100.0 35 ............................... TTAAGCTGAACAAACAACTAACCACCCCCCAAATG 1955686 31 100.0 35 ............................... GAGGCCAAAAAAGGGTTCGCAAGCGAAGCTAAGCG 1955620 31 100.0 38 ............................... GGAAAAATTTTTCTACTAGAAAAAAACTACAAAAAAAG 1955551 31 100.0 37 ............................... CGGATTAAGCTTTGCAAGAGTAATTGACCCATCTGCG 1955483 31 100.0 38 ............................... TGTTTTTGATAGTTTGACTAGTGATTTTATAGATACTG 1955414 31 100.0 36 ............................... TTCTGCTACCATTCATTCCTCACCCCTTCCCGCTCG 1955347 31 100.0 37 ............................... TTTTTCCCACTGTTCTCCCCGGCAGGTGTCCATGTCG 1955279 31 100.0 37 ............................... CTAATAAAACAGCCAAAAATGGGAAAAATCACGGGGG 1955211 31 100.0 35 ............................... CATGTGTGGCGAGATGAAGAAACATACTGAATTTG 1955145 31 100.0 37 ............................... AGGGTCTCTGTGATTTTGACTTTACGCATGATTACCG 1955077 31 100.0 35 ............................... CTGTATGCGCTGAAACATCCGGGCAGCAGGCAACG 1955011 31 100.0 38 ............................... TTCAAGTATATCAATTAAATTTAATACCCATGTTAAAG 1954942 31 100.0 37 ............................... AACTGATGATATTATTGAATTTTTTGGTGCTGGATTG 1954874 31 100.0 37 ............................... AAAGAACTTTTTGCAAAAGGATATTACGAATATACAG 1954806 31 100.0 35 ............................... CTTCCTCCTTTAAAATTGGTTTTATCCTTCAACGG 1954740 31 100.0 35 ............................... CTGCTAATCATGCCCAAGTCGAAGACAGAATTCAG 1954674 31 100.0 36 ............................... ATTGGTGACTTTTTGAACGTCACTAGCGAACACAAG 1954607 31 100.0 36 ............................... TTATGAAACTTTTAAAATTAAGGAGGGATTATGTTG 1954540 31 100.0 38 ............................... TTGGTTGACAAGTAGTCAGATTAAAAATATTCGTAATG 1954471 31 100.0 37 ............................... TTCTAAAAAACCTAAGGAGATGGTCACTTATGAAAGG 1954403 31 100.0 37 ............................... ATTTTGAAACCTATTAAAACCTAAAGGAGAAGGTAAG 1954335 31 100.0 36 ............................... CATCTGCTGCAGTCGTCTGTTTGTGAGCAGTACTAG 1954268 31 100.0 36 ............................... CATGCAGAAAATGTGTATATGAACGACGATTTAACG 1954201 31 100.0 36 ............................... GTACACTGTCGCGGGAATAAACAGATACGTTCTCCG 1954134 31 100.0 35 ............................... TGTAAACTCCCGTCTACTATTGTATACTGACCAGG 1954068 31 100.0 36 ............................... CTGCTCAACAGCGTTCAGTTTGGCTTCGAGAGTAGG 1954001 31 100.0 35 ............................... AGAGCAGGGCAAAGATAATAAACAAGCAGGTCGCG 1953935 31 100.0 34 ............................... ATCTTCTGACCGGTGGGAATGTACGTAAGTTGCG 1953870 31 100.0 37 ............................... TCTTTTATGTCTTTGTGTACACTGTAAAATGCCGGCG 1953802 31 100.0 37 ............................... ACCAACAGAATACAACTTCTTTGTTTTTACTTTTATG 1953734 31 100.0 37 ............................... AAAATATACCTGTAAATATACCAGACTGTAATGGCAG 1953666 31 100.0 37 ............................... TGTTACATGATTATTCGGTATTCCTCTTACAACCCCG 1953598 31 100.0 38 ............................... CTGGTATTGTTGTTTTTTTAATAATGTACGTATTCAAG 1953529 31 100.0 36 ............................... AACGCTCATAATGCCGTATTTCGAGATAAGCGCCCG 1953462 31 100.0 36 ............................... TTCGAACCATATGAATTTGCAATAGCCTTTGCTAAG 1953395 31 100.0 36 ............................... ACGTGATAGGTCGGGGCGATTGGTTCGTTATATCCG 1953328 31 100.0 38 ............................... AGGAGACAAGCGTAGAAACTGCGGAGGTCGCTGGCCCG 1953259 31 100.0 37 ............................... CCAATCCGGACATAATCCTCCGGAAGACTGGTCGCGG 1953191 31 100.0 36 ............................... ATGGTATCATAGTCAGCGCCATTGACTGTGACCGGG 1953124 31 100.0 35 ............................... TGGTAATTCAGCAAAAGTTAGACCGTTTATGTTAG 1953058 31 100.0 37 ............................... TACACTATCATTCTATAGCATTTTTTGGCCCGAAAAG 1952990 31 100.0 38 ............................... ATCTAGCACTGGTGCCGCTTCAATTATGTCTATTCGTG 1952921 31 100.0 36 ............................... TGTATAGCCGGCCTGCTCATCAACGCATATCTGCAG 1952854 31 100.0 37 ............................... CTAATAAAACAGCCAAAAATGGGAAAAATCACGGGGG 1952786 31 100.0 35 ............................... CATTTCCCTCCCGCACTCCAGACACCTGATCCACG 1952720 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 98 31 100.0 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAC # Left flank : TTTTATTTGGAAGTAGGGGGGTAGATGTCAATGATGGTATTGATAACTTATGACGTTAATACCACCACAGAAGCCGGCAGAAAAAGATTACGACTCGTCGCAAAGCAATGCGTAAACTATGGACAAAGAGTCCAAAACTCCGTATTCGAATGTTTGGTTGATCCGGCCCAGTTTGCTCAGTTACGGCACAGGCTGGAAGAGATAATAGACCAAGAAAAGGATAGTTTGAGGTATTATTATCTTGGTAGTAATTGGAAAAACAGAGTAGAGCATGTTGGAGCAAAATCCACTTTTGATCCTGAAGGGACTTTAATAGTTTAGTACAATAAGCGCGAACCATATGTGAACATGTTTTTTTCTGCAAAATCGCACCGCATAAAAATCTAGGGTTAATAGTTAACATCTGGTTTTTGGGGAACACTGTTTTTATTACCTAAATCCGGGATTCGCTATAATAAACTGCTTAACCCTTGAAGTGTCTTGCTTTATTTTAGGTGCTG # Right flank : TCAAAGAAAACGCAGGGGCCTTCATTGCTTCAATAGTCGCACCTGTTGAAGACCACATTATTTGGCGGCAGTTTGATAACCGACAGTGGCGGTTGTCAAGGAACGCCAAATAAGGTTGTCAACAGGTTAGGCATTTCCGCCAATGGCGGTGGTCATTTTATCAAGGTACCGGAAAGCCCACCTTTATTGGCGGTGGGCTAAATATACTAAAACTTGCGAAAATCCTCTATCACCCTAAGCACCCCTTCCCGGTCAACCACATGGCTGGACTGAATCCGGGCATCAAGCATAGCTTGTATACATAGATTGTTTATCACCCTGGGGATTCCTTTGGAATATGCAAATATCTCTTTTACTGCATCGGAGCTAAAAATCTGACTGCGGGCTTTCACCACTTCTAAATGATGGGCTATGTAGGCGCCGGTTTCTTCTAAGGTCAGCCCACTCAAATGATAGCGGACCTGAATCCTTTGGGTTATGGCCTGGAAAATCTGCATGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2080288-2078201 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================================================================================== ================== 2080287 23 100.0 49 ....................... ACTGTGCAGGAATTAACTATTCCATCCTTAATTCATGTTTAATCTTCCT 2080215 23 100.0 53 ....................... CCTACGCTATGGGTGCACACGTAGCGCAGGAAATAACAGCGTTTAATCTTCCT 2080139 23 100.0 50 ....................... TTTTGTCCAAACACAATTTGTCTTGATTTGCATTTTTGTTTAATCTTCCT 2080066 23 100.0 54 ....................... TTGTGCTTTTTCGATTCTGTAAGAACGTGCTAAAATGGCTTGTTTAATCTTCCT 2079989 23 100.0 56 ....................... GCGGAGGGGGAAAGTAATAATCTCCCTCCGTGACCCCGGAGCAGTTTAATCTTCCT 2079910 23 100.0 51 ....................... CACCTCGTCGAACTGTCCGAAGAAACAAGTGTTAATTCGTTTAATCTTCCT 2079836 23 100.0 52 ....................... GAATTGCTTGATGGCAGAACCAAGAAATGGCTCTGTACTGTTTAATCTTCCT 2079761 23 100.0 50 ....................... GTACGGTAGAATATTTTTTGAAATGGATTGATGATAAGTTTAATCTTCCT 2079688 23 100.0 51 ....................... TTTTGATATAATTCTTCTAAAGTACCATTATTATCAATGTTTAATCTTCCT 2079614 23 100.0 54 ....................... TCACTGGCGCAGCGGGGACAATGGACTGTGAACATGTAGCAGTTTAATCTTCCT 2079537 23 100.0 52 ....................... AGAAAAGCTAGCTGACATTGCTTTTCTATGTGCTACTACGTTTAATCTTCCT 2079462 23 100.0 52 ....................... ATACTACCAGAACATGAATAGTCATAAGGGGTCATATAAGTTTAATCTTCCT 2079387 23 100.0 50 ....................... GTACGGTAGAATATTTTTTGAAATGGATTGATGATAAGTTTAATCTTCCT 2079314 23 100.0 51 ....................... TTTTGATATAATTCTTCTAAAGTACCATTATTATCAATGTTTAATCTTCCT 2079240 23 100.0 54 ....................... TCACTGGCGCAGCGGGGACAATGGACTGTGAACATGTAGCAGTTTAATCTTCCT 2079163 23 100.0 52 ....................... AGAAAAGCTAGCTGACATTGCTTTTCTATGTGCTACTACGTTTAATCTTCCT 2079088 23 100.0 52 ....................... ATACTACCAGAACATGAATAGTCATAAGGGGTCATATAAGTTTAATCTTCCT 2079013 23 100.0 50 ....................... TATGACCACAACTTCACCAGCTGAAGTTGCAAAGCCAGTTTAATCTTCCT 2078940 23 100.0 49 ....................... CTTTAGGCGAATATAGTCCCGTGTCGTCCATTATTTGTTTAATCTTCCT 2078868 23 100.0 48 ....................... GTTATTCTTCTGGCATTATACGTAGCTATGTCATAGTTTAATCTTCCT 2078797 23 100.0 47 ....................... GACCAGAACGAATTACAATAATTCGTATAATATCGTTTAATCTTCCT 2078727 23 100.0 46 ....................... GAGTACTATAGCCAATTTTAGTCCCGGCCCTGCGTTTAATCTTCCT 2078658 23 100.0 48 ....................... TCTACCCGCCGGGAGGCGGGGGATTATTTTTGATTGTTTAATCTTCCT 2078587 23 100.0 51 ....................... GAAGCGTAAATTTCGTAGTAGGCTACATCGGCTTCAAAGTTTAATCTTCCT 2078513 23 100.0 51 ....................... CAGCATCTGGACAAGAAATAGTATCCATTCGGAATTTAGTTTAATCTTCCT 2078439 23 100.0 50 ....................... GGTCCCATCCCCCGGCGGCCTGTTCCGGCGGGTTTGCGTTTAATCTTCCT 2078366 23 95.7 120 ......................T TTGGGTTGCCGAAAATGATATATTTGCCTTTGCCAAAGTTTGATCTTCCTTATCTCAACTGTTAACTGTTAACTGTCAACTGTCAACTGATGTTTGCCTTTGCCAAAGTTTAATCTTCCT 2078223 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================================================================================== ================== 28 23 99.8 53 TATCCCCGTAAGGGGACGGAAAC # Left flank : ATGATTACTTCAGGTTTGATGACACTGAACCTGAGGAAATGCGCAGGTACCTGGTAGTAGTGATATACGACGTAATTGACAATAAACGGAGGAACAGGCTGGCCAAGTACCTGAAAAGGTTTGGGTTCCGGGTCCAGAAGTCGGCCTTCGAATGTGTTTTGGACTCCAAGAATTACAAAAAATTGACGGGAGGTATTGCTAAATACATTACTGCCGATGACCTGCTGAGGGTTTATAAACTGGCCGGGAATGCCGACGTCCAGGTTTGGGGAAGTGTGGAAAAGACGGAGGTCGATGAGGTGATAATTGTGTAAAATTATTCATTCCGGTGAATATTGGGAATTTTTGTTAAGCATGAGCCGCGCATTGAATTAAGCTGCATGAGGAGGGTTTATTATGCAAAATTGCGGTGTGGTTGTATACAATGGGTGCATAAGCCGCAAAGCCGTTTTTCGGCCTTACTCCCATGCGCAATTTCGCAGCTAGGGTTTAATCTTCCT # Right flank : CGGAATACACGTTCGTCACTACGATTGGACAAACAGCACATTCTCTTTAAAACCTGCCACCTTCTCAGGGTGTGCTAATTTGACGCACTACAAAAAAAGAAAACCAGTGGAAAATGTCCGCCGGTTCAGGTTGAAATTATATGCCCTTACAAAAAACAAAGGGAGAGGCGAAAACCTCTCCCTAGTTCTTTCTATTTTGGATATAAGGCACGACCAGCGGCCACGGTGCTTTGTCCAGGTGTACCACATCATACGCCGGACCGTGGGTGAATTTGATTATGTTGAGCTACGGGCTGCGGCTAACTTCCCGTCCTGTTTAATAAACAGGGCATGGCTCCAGCCAAATTCATTGGGATTTCCAGAAACAACCCTTATTTCACCGTCACCTTCACAAAAATTAGCCTTTTTAAAAACTTTTCAAACTTTTGTTTTCGACTTTTTCAGCTTACTTCATGCGTTTGAGAATAAAGGTCTCTTCTTCCTGTTTGGTCAGTCTGGCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2554328-2549914 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 2554327 30 100.0 38 .............................. CCGCTTTTGGAGTGTGTGATGAATGAGGCAACCAAAGA 2554259 30 100.0 36 .............................. TCTTCACCCCCATATCCGCAGTAAGGACAAAAATCA 2554193 30 100.0 37 .............................. ATGCTGTCCCATAGCGGTACCCAATAATCCCTCAGCA 2554126 30 100.0 38 .............................. CACCTCATCTATGCGGATGGGCAATGCCTGAAGCTCCT 2554058 30 100.0 37 .............................. ACTAACTTAAAATTTAATTTGCAAATACCTTCTTTTG 2553991 30 100.0 35 .............................. AAATCCTCAGGCATTCTAGTAAAAACATACTCTCC 2553926 30 100.0 38 .............................. TAAAAATTCTTCAAATCATACCTATCAGCCTTATCTTT 2553858 30 100.0 35 .............................. GACTTCATCTTATCACCTCCCCTAAAATAATTTTT 2553793 30 100.0 38 .............................. ATAGCGTCTTGTAATTCTTCCGGCAACTGGTCAAATGT 2553725 30 100.0 38 .............................. AGGGATAACCAATTTATTATTTATCCAGGAACAGCCAA 2553657 30 100.0 37 .............................. CTCCATATCAAGGACTCATGTTTGACGGGTTTAGCGA 2553590 30 100.0 40 .............................. ATGCATCAATATGTTCTACGTCAAGAATATAATTATTTTC 2553520 30 100.0 39 .............................. ATAGTTACCTCCTGGTGCGGGGAGGTGAAACCGTCCCGC 2553451 30 100.0 35 .............................. TAGAAGCCGGGGACGTTTACCAGGTCATAACCCCG 2553386 30 100.0 38 .............................. TGGGACAGGTTATTCGGGTGGTTAAAAAAGTTGGTAGG 2553318 30 100.0 35 .............................. AAATAACCAAAAGGACCGCTTCGCAGCAGGACAGC 2553253 30 100.0 39 .............................. TAGGGAAAACCATCGGCCCAATCAGGTGCCGGTTGTACG 2553184 30 100.0 40 .............................. TTATTAGCCCCCTAATTTCTGCCACCGGGATTCTCCATCC 2553114 30 100.0 39 .............................. ATTTTTTCGAGATGGTTGTAGATTTTCTGCGCTGACTTG 2553045 30 100.0 36 .............................. ACCGTTATTACAGCGTGAAAGTCGTCTATTTTTTTG 2552979 30 100.0 38 .............................. AAGTCCATGACGACGATACTATAGATGTGCAAACTCTC 2552911 30 100.0 36 .............................. ATTGTTCGGTTAAAGATATTGAAACAGCTTTATTTC 2552845 30 100.0 35 .............................. CACCTTCAGCCACATTAAGCATCTTCTTTACCAGG 2552780 30 100.0 36 .............................. CGGTTTACGCCAGCGCCATCACTGTTCGTGAGGACC 2552714 30 100.0 36 .............................. TTTTACGGCGTTTTCAGTTCAAATGCCGTTTCGATG 2552648 30 100.0 36 .............................. CTGAGATATATGTTGCCTCATATACCGGGATGCGCA 2552582 30 100.0 40 .............................. TCAGATGCCGCCTGTTCCCGTTGAGCAGGTGTAGCTGAAT 2552512 30 100.0 36 .............................. TATCAACCCCAAAAGAAAAGAGCCCGAAGGCTCTAC 2552446 30 100.0 35 .............................. TCTTCTTTAACCAGTTCCTTCAACAATCCTAAAAC 2552381 30 100.0 38 .............................. GCCTATTTTTTCTCTGAAAATAAAAAAACAGCCCATGA 2552313 30 100.0 36 .............................. AAAAAATTCGCGAGTGTAATGGCTGGGCTATGTACA 2552247 30 100.0 40 .............................. TTGTTGATTACAACGATGGGTATTTCCGATTGATTGATAG 2552177 30 100.0 37 .............................. CTCGGATACCAGTGGTTAACCTCTAACCCTGACTACC 2552110 30 100.0 36 .............................. AAAGGCCGGTAGTGAAATTCAGATTCTTTTTCCCGG 2552044 30 100.0 39 .............................. TACACTTCTGCCTCAACCACAACTGGCTTTTTTCTCCAC 2551975 30 100.0 39 .............................. CAACGTAAGCCAATGGGTCAACAGCATAGCCGAAGTCCA 2551906 30 100.0 35 .............................. GGGTTGGGCAATAATGCCAGCTACCCAACGATACA 2551841 30 100.0 38 .............................. CTTCCTTTTCGTAGTTCTTCCCACTCTTCTAAGTTCAT 2551773 30 100.0 37 .............................. TGATACCCACTGGAGATGATCCAGACCATACTTCTTC 2551706 30 100.0 35 .............................. TTGTTTCAAGCGTGAGGTCCATTGTTTTGTAGTTG 2551641 30 100.0 38 .............................. TCATTTGGTAGGTAAAGGCCTTGTTGTTCGGCAAACCG 2551573 30 100.0 37 .............................. AAACATATGCCTAATTTCCCCTATATCATTGGGATTG 2551506 30 100.0 40 .............................. CTGCCCGGATCTACGTCCGATTCCGGCAGGTTCACGTCGC 2551436 30 100.0 37 .............................. AACAAATCAAAATGAATATAAATAAAGGCATTGACAA 2551369 30 100.0 36 .............................. ACGAATTTCAAAAAAATGACTATTTAGAAAAAAATG 2551303 30 100.0 38 .............................. AACAAGTTCGTGCTGAACGCGAACAGGCGAAGCTGAAC 2551235 30 100.0 38 .............................. TAGAAGTCCAGCTTCATCCGGGTGTAGGCGGTTTCATC 2551167 30 100.0 37 .............................. ATCAGTTCTTCCGTCACCGGCTGGCCTTCCAGGTCGG 2551100 30 100.0 36 .............................. CAAAGTAATTGGCAATGCTTTTGAAGGTGGTGAAGC 2551034 30 100.0 37 .............................. CAGGAAGTGCATAATCATATTAACGAAACCGCCACCG 2550967 30 100.0 37 .............................. TAGGAAAAGTATATGTGAACAACAGTGCGGCAAGTGT 2550900 30 96.7 35 ......G....................... AATGGAGGCAGCAGCTTAAGGGGCCGCTAACTACT 2550835 30 100.0 37 .............................. GCTAAAACAGTTAAGTCTCTCCGCTCTACTAATCCGG 2550768 30 100.0 36 .............................. TCCTGATTGTGGTACATCATTAGGAACATATGGAGG 2550702 30 96.7 37 .............T................ TCATACCTGACAGCGGTAAAGGTTGCAGTAGGGCCTT 2550635 29 96.7 38 ..........-................... CCATATTTTTTTCTTCCCACCGCGGCGGCTATCTTTTC 2550568 30 96.7 38 .................G............ GGACTAACCCCGGGTATCACAATATCGGCGGCCATTCC 2550500 30 100.0 36 .............................. CATCCCGGGTGTTGGCACATAGGGCCATCACGTTCC 2550434 30 96.7 39 .................G............ GCGGTGAGTGTCGCCACTGCATCGCACGGCATTTTCTCA 2550365 30 100.0 125 .............................. AGATGACTGTAAATGTCAAAAACCATATCCCATCGTCCTGTTGACAAATGTAATGGTATTTGATGAAAATAAAAACCATTTGTTTAGGATATGCCCTCTCTGCGGAACGACTTATACTGCTAAAG 2550210 30 80.0 236 ..C..A...GG..........A.......A TCAAAAGGGGTTGAGGAAATGAATGACGATGTAAAGGAAAGGCTCATGAAAACCAAAAACACAGAAGAATTTTGGCAGATTATAAAAGAAGAATACCCGGGAGACAAATTGTCGATGTATTTTTTATGGGAGGAACTGGGCAAGGATGTATTTGGACATCTTACTAAGTTGATATTCCGTTATAACCCGGAATGAAGTTCATCCAATTTATCAGAAGTAGCTAGGGCAGGATTTGG G [2550194] 2549943 30 73.3 0 ...........GT..GCGT.......T..T | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 62 30 99.0 42 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : GGCTTGCTAAGACTAATAGATTCATGTTCCTCAAGCAGCTCCTGAAAATGCGAGAAATTAGCTTTGGAATATTTCTCCGATTTTTAAGATTCACAACCAAATTCTTCACCTCATCAGTTAGAGCATGCGAAGGTTTCCGGCCCCTGTTTTTGTGGATTACGAACGCCTCGCCATATTCCTTGACCCCCTTTTTAATGCGTTTTACCTGGCGTTCGCTTAGGCTTAAAATCTCCGCCGCTTCTCTGATGGTCATTTTCCCGTCGATTAGACAACGGGCCATATACAGTTTGTTTCGTTCATCCTGTGTCATTGATAATATCATCCTTTCATTTTAACAGAAGTGACATTTTCTCAGAAATATTTCAAGGTGACATTATCACAGAATAAACACAATACTGCAAAACAGGCCTTTAAAAAAGAACATTTTTATGTTAAAATGCTGAAAGGTACAGAAAACCAAAAAGCCTTGCTGTACCTGATTTTTTGGCCCACCGGAACGG # Right flank : ATTGCAGGGAACGCCTCACATATAAGACGTTCGGGGTCATCAATCAAATGGTTGCAGGTCATAAATGATTCAGCCGAAAAAATTGTCGCCCCGTCTACAAGGCGGGGCTTTTATGGGTGCGAAAGGTTTATTTTTCTTACCCGGGCCAAAAGTGCCCTAAAGGCCGGAAAACCGGTGACAGGATCAAGAACGGTATCATCGGTTAAAAGGTTTACATTGGCCTCGGCCCAACCATGGGGAACATAGATCACTTGAGGATGTAGCTCCTCTGTTAACTTTGCCTTGAGCTCAATTCTTCCTCTCAGGGACTCAACGGCAAGCAACTCTCCGTCTTTTATCTTTAGCTTTTCGGCTGTTTTTCTGTTCATTTCAACTAAGGGCTCATACGCCCGTTTACGAAATGAAGGCAGATTACGGTAGCGGGAATGGATATAACTGAGAGCCCTCGCCCCGGTGCTGAGAATAAACGGATAATCTCTGGCAATTTCGGGCGTGGACCA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 2571266-2567569 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2571265 30 100.0 37 .............................. AGGATAAAGACGGCATAATCTGTGACGGTTCGGTTCG 2571198 30 100.0 35 .............................. TAACACTTCGGATAATTTTTATATACCCAATCGGA 2571133 30 100.0 38 .............................. AATAGTCATTTTTTTGGAATTCGTTAAGCAACTGTTCC 2571065 30 100.0 36 .............................. TAGTTAATGCCGTTCCATAATGCTGCGAATTTTCTC 2570999 30 100.0 39 .............................. CAGGACTATCAAAAAATGAGGTATCATATGACGAATATG 2570930 30 100.0 36 .............................. TTTGGCTGGTTCAAAAACGTATTCTACTATTTTATA 2570864 30 100.0 37 .............................. AAACCTAAAATGGAGAAGGTAAGGAGTGGTAATCATG 2570797 30 100.0 36 .............................. AAAAATCCATTTCTGCTCTTACTTCGGCTAAAGCTC 2570731 30 100.0 37 .............................. CCAAGTAGTTAGCGCAATTCTCGGCTTGCGCTCCCCA 2570664 30 100.0 37 .............................. ATAGGTGTTTCGGTTACGATAATCCGAATAGGTAACC 2570597 30 100.0 35 .............................. TTCTACTGGTCAATATGAGTTTTTAGATGTAATTG 2570532 30 100.0 38 .............................. CGTCGTAAAAAGGAAATAAAAAGAGGAATATTCAAAAG 2570464 30 100.0 36 .............................. ATCAACAGATACAACAGGGTCAATTTCCCCCTGTTT 2570398 30 100.0 36 .............................. AGGAATTATCGGGGCTTGTAAGGCTTCCCAGCCGGA 2570332 30 100.0 36 .............................. TTTATTCTTCTGTGGATAACTACATTATTATGAGGA 2570266 30 100.0 38 .............................. TGATAACATATAATCAAAAGATAACACAAGGAGGAAAA 2570198 30 100.0 36 .............................. TACTGTACTTTTTCGGTTTTTATTTCTGTTGGTTTA 2570132 30 100.0 38 .............................. GCTTTATCATTAGCAGGGTCCTTAACCGCATCGTCTAT 2570064 30 100.0 38 .............................. TAGATTTTCTGAAAAGACGGAAATTGTTGCGTTCGTAG 2569996 30 100.0 39 .............................. CGCCCATAACCTGGGCTTCTCCGCCATAGGAGAATGAAA 2569927 30 100.0 36 .............................. AGTTATGTTTGTCAGTGTTTCGCGCGGTCCAATATA 2569861 30 100.0 38 .............................. GATATACAAGCGAAACAGAGAAACAATATAACGCAAGA 2569793 30 100.0 37 .............................. TCATAGCGGCAAATGGATATGCAAAAAAATCCCTGCC 2569726 30 100.0 36 .............................. AAAATCCATTTCTGCTTTTACCTCAGCTAAAGCTCT 2569660 30 100.0 37 .............................. AAAAGTCCACGTAAAGCGTGAATGTCCAGCCTATTTC 2569593 30 100.0 35 .............................. GTCAGTGGAAAACAGGTAAAAGAGAGCCCGATTAC 2569528 30 100.0 37 .............................. CTTTGTATAATGAAAATGGTAGTGGTATGTTATCTTT 2569461 30 100.0 36 .............................. TTCCAAGGTTCGCCCATATCGAAAGGGTATTTCTGT 2569395 30 100.0 35 .............................. TATCCTGCAGCCGTTCCACCCTAACATCAACAACC 2569330 30 100.0 35 .............................. TGGAAGGCGTACAGCACGGTATGGGTTGCCGTGCC 2569265 30 100.0 38 .............................. CCGTACACATCAACAATCCCCCGGGTAACGGCCATGAC 2569197 30 100.0 36 .............................. AGGATAAAAAAAATAAGCCTGACCTAAGCCAGGCTG 2569131 30 100.0 34 .............................. CACAATTCCCTCTCTTCGCATTTGTGCCCATTCA 2569067 30 100.0 37 .............................. AAAATGGATGGCAGGTAATTAAACAGTATGAAAACAC 2569000 30 100.0 40 .............................. ATGGTTCTAAGAAATCAGTTGTTCCAAACCTGCGGCACAA 2568930 30 100.0 36 .............................. GCAAAAGAATCATATAAACTACGCAAATAATCGGTC 2568864 30 100.0 39 .............................. ATGAAGCAAGAAAAAAAGACTCCCAGGAGGCCCATAATG 2568795 30 100.0 35 .............................. TTCTGTGGTGCATGTTAAGACCTTGTATAATTCAA 2568730 30 96.7 34 .................G............ AACTACTTCTGCACAATACCCACAATGAGCATCA 2568666 30 96.7 36 .................G............ GTACATCCTGCATACTTGCCTTGCCGAACAAAAATC 2568600 30 100.0 35 .............................. GAAGCAGGGACAACCAAATAACCGTTTTCCGGCCT 2568535 30 100.0 37 .............................. CGGCGTCAAATGGCGTGAAAGTATGGATAGAGCACTG 2568468 30 100.0 36 .............................. CGCCAGGCAGCGCATCAAACTCCTTCGCCTTGGCAA 2568402 30 100.0 40 .............................. CACGCAGTACCAGGCTGCCGTTCGGCGCATACTGCTGCGA 2568332 30 96.7 38 .................G............ CAGACCTGGCTGGAGCAAGAAACATCGACTTAGAAGAA 2568264 30 96.7 35 .................G............ TCCAGCGGTGCAGGGCGCCAGGGTTTTTGGTTTCC 2568199 30 96.7 36 .................G............ GACCATTGGGTAAACCTTTGCTCTACGTGGCCTTTT 2568133 30 100.0 37 .............................. TAGGTAAAAAGGTTGTTTTGGCTTTTGTCCTGGAAAA 2568066 30 100.0 38 .............................. AACGGAAAAATCCTTCTTTTTTCGGAAAAAAATTTCCA 2567998 30 100.0 35 .............................. ACCGGGGAACCGAAAAAACAGTTAAAACCAGAATA 2567933 30 100.0 36 .............................. TAAATACGGTAAAGTCTCTCATGTGGCGCAAGTACA 2567867 30 100.0 37 .............................. ACTTCCCGGTTGGCAACTGTCCTATCTGTATAAAATT 2567800 30 96.7 39 .............................A GTGATTTTTCGCCATGGCCCAAGGGAAGCTTATCATTGA 2567731 30 100.0 37 .............................. TAGAAAAAACAGATGCAGCTAAGTTGAAGGAGTTGTT 2567664 30 100.0 36 .............................. ATATCTATAACATCAAGCTTTGCCACAAAACGTTTA 2567598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 56 30 99.6 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : GATTTAGCCGAAAAAAAACAGGTTAATTTTTCACATCTTCTGCAAGTAAGTTTAAAAAAGCATTTAGGAATTAATGAAAAGACTAGATTAAAGGGATAATTGTCGCCCTGTCTACAAGGCGGGGCTTTTATACGTGTACCCTGCATGGGGGATAACAAGCTCAAGACTACTACCAAACACCGGGATACTGGCAGGGAAGTTTCATAAAGACGGTTAATCAGACTGGAACTGTGTAAACTGGAAAAGTACCAGATGGGCGTAAGCCCTGAATTATTACTTCAAAGCCGAAACCGGTCAGACGGAAAATTTGTCGTCGACCTCCGGTAGCGCAAAAACCCCGGGGGATCGACGACAAACCCAAAACAGGGCGCAGGCCTAGAAAAATAAGCAAATACTGCAAAACAGGCCTTTAAAAAAGAACATTTTTATGATAAAATGCTGAAAGGTACAGAAAACCAAAAAGCCTTGCTGTACCTGATTTTTTGGCCCACCGGAACGGG # Right flank : TGCCTTTTGCTAATTTAGGAGGGAGGAATTGTATTAATGGATGCTTTAAAGGAAGATGAATTACGTCGTTGTACTAAGAACTATTGGAATAACAAGAAAGATATAGATTCATCATTAGGGGCTTATATTTGTGATAAGGAAAAGCAGCTTCATAACATGAGCTTATTAAAAGCTGAGCTGGAATTTGCCAGAGCAAAAGGAAATATTAAGAATACGCCCTGTAAGGTGCTGATACTTTTGGTTGGGTTTTCCCTGGAACCACTTTTGCAATCGATATGTGTATATCAGCCCAAAACGATTGTACTGTTACTGAATGAGGATGGCTATGGAAGAGATGAACAATGGCATACTTATGCTGAACATATAGTTAAAGCGGTAAAGCGCTTGAAGGAAAAAGGGCTTATTCAAGAAGAACCTTTTTTCCCCAGTGGTAATGTGTCGGAAAATGGGGTTAAGAAGCTGAATAAAGTGGGTTATCCGGTTCAAAGCAGTCCGGAGTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 6 2572639-2572406 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2572638 31 90.3 36 ..C...A.C...................... TTTCGGTGCCTGGCTGTGCGCTACATGATAGGCTAT A [2572629] 2572570 31 96.8 35 C.............................. GACGCAGCCTATGATCTGTTGTCCAACTCTTGATG 2572504 31 100.0 37 ............................... ATGAAGTGGAAGAGCATATTAAGCAACGAGCCAATCT 2572436 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.8 36 GGTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : ACAAACTGCTTTTTCAACAAACTCACTAAGCATGCAACGAAAACGGCCATAGGAAATTTGGTAAAAGAGAAATAGTCTTATCCTGGCCCTCGACCTTATTTTCCGCCTGACACAAATAGCGGTATATAGGTATCTGAATCTCTGAATCGGCATCTACCGCCCATCTGTCAAAATGTCCGTGCCGATGAGGTTTACACGAACCGCAAATGGGACAATCAGCCGGAAAATCTGGAGATTTTTCGCCGTAACAGTCTAAATATTCTTTGACAGACGCTCCCAGGAAAGTTATCATAACCATAGAAACAGGACTCCTATGAGTTCTGTTTACAGGAGATGAGCTTTCGGGTGTCTGTCAGGACGTTGGCCGAAAGCTCATTTTAATTTGCTCTCCGTAAACCAGAAAATTATGCCAAGTCCCGATTCGATTAATTGGCGGAAATATCCTTCAATACCGACATATATTTTGGTCAAAATCCCAAGTGTTGCCGACATATAATTTG # Right flank : ATTGACACGCGCAAATAATACGTATTAGAATAAGATAAAGGATGGGGAACATAAATGAAGAGTTATTCTTCGAAGGAAATACTCAAAATCCTCGAAAAAGATGGTTGGATAGAGAAAAACCAAAGAGGTTCCCACAAACAGCTAATTCACCCAACGAAGCCAGGTAAGGTAACAGTTCCTCATCCGAAGAAGGACCTTGACCCCAAGACTTTAAGAAGCATACTAAAACAGGCGGGGCTTGAATAAAAATCCTGCCCCGCTCAAATAAGTTTAATAAATATTTAAGCGTAATTTTTCACGCGAAAGGAGGTCTATAAATATGGACAAATATTTGTTTCCTGCTATATTTGAGCCTGGTGAAGTTAAAGGTTACTGCGTTACTTTCCCTGATTTACCTGGTTGCATTACAGAGGGAGACACTTTAGAAGAAGCATTGCATATGGCCAAAGATGCGTTGGAACTTCACCTTTATGGTATGGAAGAGGACGGTGATTATATTC # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 7 2582293-2575925 **** Predicted by CRISPRDetect 2.4 *** >NC_014152.1 Thermincola potens JR, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2582292 30 100.0 40 .............................. CGGTTCGGTATGTTTGCTATTAAGGTATTGCTTAACGCAG 2582222 30 100.0 39 .............................. TTGGAAAAACAAAAGGGGGGAAAATAGTTTGTCCTTAAA 2582153 30 100.0 38 .............................. GCATCTTACTTATGATCGCCTCTTCTAAGTTAATCTCG 2582085 30 100.0 37 .............................. AGCGTATTCTCCGAGGTCGTGGGTACCGGGTGAAGGA 2582018 30 100.0 39 .............................. AAGGAGAACGGCGAGGAAATGAAGCCGGAGGACCTGCAG 2581949 30 100.0 35 .............................. AGGGGGCATTTCATGTGAAAAGAAAAACAGGATTT 2581884 30 100.0 39 .............................. ACCGAGGGCGTAACTCCTACTGGAAACAGCCTGAACGTC 2581815 30 100.0 37 .............................. AGGCAGAAACCCGCGACAAGATGATTCGCGAACTGTC 2581748 30 100.0 38 .............................. TTGCAGGTGTGAACGGTATGAGAAAGCGGATTAAGAAA 2581680 30 100.0 38 .............................. ATGAGATACAAAATGAGTGGAATTCGAACGATTGGAAA 2581612 30 100.0 35 .............................. CACCGATGCCGAATGGAGGAGGATAAATACAGTAC 2581547 30 100.0 37 .............................. ATACTTCATCGATAAAACTACTCATGGATTTTGTATC 2581480 30 100.0 39 .............................. TTTCACCTCTTCTGACCAATAGCCTTTTTCATTTATTAG 2581411 30 100.0 36 .............................. CGCGTGTTTTGTCCCAGTACTCGGCTTCATAGTATC 2581345 30 100.0 38 .............................. ACCTCTTCCATTCTTCGTCCGTCAACCTAGCCAGTTTC 2581277 30 100.0 37 .............................. GGGGTATTTCATTTTGATATTCAAAACCACAATTAAC 2581210 30 100.0 38 .............................. TTCAAGGATTTCGTATACAGTTTGCGGCACTTCTACTT 2581142 30 100.0 39 .............................. ACGAACGAGACCGCAAACCAGGGACGAAAGCGGTTGGTA 2581073 30 100.0 38 .............................. TCAACAATCTCTCCATCTATCTGTTCGATGGTTAATTG 2581005 30 100.0 35 .............................. CCTAATCAAATTATGTACAATCTTACAACTCAATC 2580940 30 100.0 36 .............................. TTTTCAGGTAGTATATAATAAAATTCGTAAGCAGTC 2580874 30 100.0 36 .............................. ATCATACAAGCATATTAAGCCAATACAAGCCAAAAT 2580808 30 100.0 36 .............................. AGGTCAGTGAGCTTGTTTTTCATAGGGAACCTCCTC 2580742 30 100.0 39 .............................. ACCGGCTCGAAAGCATAATTACACCACCAAACTTGCTAT 2580673 30 100.0 36 .............................. ATTTTTTCGGCTACACCGTGCCGGTCTATAGCCTCT 2580607 30 100.0 38 .............................. TATTATTGGATGCTGACGATGAAGAAAAGGCCAAAATC 2580539 30 100.0 36 .............................. CCGAACTGAAACTGAGGAAATGTTTCATCGAACCGA 2580473 30 100.0 37 .............................. TCAAAGTCAGCAGGCACTAAAAAACCACCTTCAGAAC 2580406 30 100.0 36 .............................. TACAATGCGGATACCGCCTGCCTGCTGTGGGCCGGT 2580340 30 100.0 36 .............................. CCACATCGTCGGTCTTAACCACGCCGTTGGAGTACG 2580274 30 100.0 38 .............................. CCATATTTTGGTTCTTACCTGTGATGCGCAGGTACCCT 2580206 30 100.0 35 .............................. ATTTCCCGGGTGGCCTCGATAACTTCCGCTTTTGC 2580141 30 100.0 36 .............................. TCAGTTCTATAATACCAGAAAAACAGCAAAAACGCA 2580075 30 100.0 39 .............................. TCCGAAAGCCAAGCAAGGATGGTGGCCAATCGGCGAAGT 2580006 30 100.0 37 .............................. CCGGCGGCGGCGCTCTTATGGGCGTGTCTCAGGTGCT 2579939 30 100.0 38 .............................. TTTGGATGAGGCAGTCATAACCCAGTGGCCCCTGCATT 2579871 30 100.0 39 .............................. CTATTCCGTGGTGATGGCTATTGCCGCAGCGAACCTGAC 2579802 30 100.0 36 .............................. TACTCTGGAGGCAACGGATACTGGCAACAAAGGACT 2579736 30 100.0 38 .............................. ACCGGCTATATAAGAAAGCAAAATACAGGTACTACCGG 2579668 30 100.0 38 .............................. AAGCCGGGATAACCAGGCGAACAGACCAAAATATGACC 2579600 30 100.0 39 .............................. AAAACCTCTCCTGTCCAAATTCGGCACTGCCGCATTCTG 2579531 30 100.0 36 .............................. AATTCCTTCGCGACGTGGCCGAAATGCGCTATGTCC 2579465 30 100.0 40 .............................. CCGTTTTGCAGTAGTAAGATGGATAGTCTTTTTATTGTTA 2579395 30 100.0 39 .............................. CTGAAGTCAGGCGCGAAATTGAGCAGATGGAAGCTGCTC 2579326 30 100.0 39 .............................. CACTAATACACTAAACGCTTTTTCGTAGTCAGTAAACTG 2579257 30 100.0 35 .............................. CACAACTCAAACACCTATTCATCATAAGGCTTCAC 2579192 30 100.0 37 .............................. ATGAGAGATGATAAGTGGCCTGGTTACTTACAGTATT 2579125 30 100.0 36 .............................. CTCAAAGATAAAGGCAAGCCTCAGCGGTCCCGCCGG 2579059 30 100.0 34 .............................. CCGTACTGGATTTTTTTGCCTGCTGTTTTGACGG 2578995 30 100.0 38 .............................. GCTCCGCAATATCATGAGCCAATCGGCCCTCTTCGGCA 2578927 30 100.0 37 .............................. TTGTGCTAGAATAGGCTGACCTGCAGCAATTGTACCA 2578860 30 100.0 36 .............................. CTTTACGGTCTCAAGAACATCCAGAGACATTGAGTT 2578794 30 100.0 39 .............................. AAGTTCCGAAACTGACGCAGCCCGAGGAAGGTGAGGCCG 2578725 30 100.0 37 .............................. TTGAGGCTTTGGTTTTTAGTTCTTCGCGGACTAGTGC 2578658 30 100.0 39 .............................. TAGGAAAAGTTTATTTGGCATTGATGTAGAACAGAAAAT 2578589 30 100.0 41 .............................. TCAAATTTGAACGTATGTATCGATTAGACAACACTATGCCC 2578518 30 100.0 37 .............................. CTGCATTGTCAGGGTTTACAAAGACGAAGAAAAGACA 2578451 30 100.0 38 .............................. CCGTTCGCATATTGGACGCTGGTTCCAGTGACCAATAC 2578383 30 100.0 35 .............................. GTGTATGACGAACACAGGGTAGAAGACGTGTCAGA 2578318 30 100.0 38 .............................. GACAGTGGGACTGCGTAGGCACGTGCAGGGGAGAATGG 2578250 30 100.0 38 .............................. TCTCCTGCGCCTTATTTGACTTTTTGACACTAAAAAAG 2578182 30 100.0 38 .............................. AGAAAGGATTGATACTATGTCAACTGTAGAAAAAACAT 2578114 30 100.0 36 .............................. CCGTGAAATCGGGCCGGTACAAGAACTATCGCATGC 2578048 30 100.0 37 .............................. ACGCACAGCAGTTTGAGTTGCAGCAGGAAACCGTCTG 2577981 30 100.0 35 .............................. TAATCCAGATCCACGAAGTCTGTACCACGGTAATA 2577916 30 100.0 39 .............................. TCAGTCCCATCAAACGGTACAATATGCATACCCTTCATA 2577847 30 100.0 41 .............................. GTCCGGTCGTTGACTTGAACGTATTCATCCAACTTGAAACT 2577776 30 100.0 36 .............................. GCCGAGAGGGCCTTGAGAGGGGAGAGGATTGTTCTG 2577710 30 100.0 38 .............................. AGTGGTACGGTGGAGGGACCAATGTTGTTATATACGCG 2577642 30 100.0 37 .............................. TGCATCTGTAATTGACCTCTTCAATCGTGGTTGAATA 2577575 30 100.0 39 .............................. CTCGAATACTGGTGGAAATATAAGGGGACCGTCAACTGC 2577506 30 100.0 38 .............................. CCTGCCTCGTACAGCTCCCAGTCCTTGGTAATGTCCAT 2577438 30 100.0 38 .............................. AGTTTCTACAAAGCTTGGAAGCGATTATAATTGACGAC 2577370 30 100.0 38 .............................. TATGACGACCGGTACAGTGTCCCCATTGCCGGGCTGCC 2577302 30 100.0 37 .............................. ACATTCCGTCAGCACACAATACTTTGATACCTTCGAC 2577235 30 100.0 37 .............................. GTTGCGCTCGTTTTTTTGTTTGTCGGCTATTGGCTGG 2577168 30 100.0 37 .............................. TTGATTTCATCTATTTCGATTTCAAGTGCTCCTCGTT 2577101 30 100.0 39 .............................. TTGCATGACATCCTAAATTAGTATCCCCACCACTACCCC 2577032 30 100.0 37 .............................. GTCATATGATCACTCCTTATAAATATTTAGGGAGGGG 2576965 30 100.0 38 .............................. TAATCCAGATCCACGAAGTCTGTACCACGGTAATATAC 2576897 30 100.0 39 .............................. CCTCCTTGGATTTTTGCGCTATTACCAGCGAATCAAAAA 2576828 30 100.0 36 .............................. AACATCTCTATAAGCTCTCGTACATACGGCGGCATA 2576762 30 100.0 37 .............................. TTTTTCGGGGTGAATTTCACGAACGGATATTTGCCGT 2576695 30 100.0 39 .............................. TCAAAGGCTTGTTCGGGTCGCATTGATTCATTCCCCACA 2576626 30 100.0 35 .............................. TCAAATCATTGAGGGGGTAAAGAAGAATGACCCGT 2576561 30 100.0 38 .............................. GAGCAGAAGACAACCTATAAATATCATCGTAATTTATT 2576493 30 100.0 39 .............................. AACTCCAGCAGGCCGCTGCGCCGGGACATGGTTACGACA 2576424 30 100.0 37 .............................. ATCGTGTGTTCATGGATTCCATAACCTCCCTGTTAGC 2576357 30 100.0 40 .............................. AAATTGCTCAAATACGGAAGTTTAAATTAGATATGTTTTA 2576287 30 100.0 36 .............................. ATGTTTGCTCTTCTGAAATTTCCTCAATGTACTGCG 2576221 30 100.0 35 .............................. TTTGACGTCGAAAACATAGATGTGTCGGTAGTAGA 2576156 30 100.0 38 .............................. TCTTCGCCGGGTACTTGTCTCATGCCCTGTATTTCCGC 2576088 30 100.0 38 .............................. CCTCGTTTGGTGTGCAAGCCTTGACCGCGCTGCCCAAA 2576020 30 100.0 36 .............................. TCCTCCGGCACTTTGAGAGTATTTCTATGGCTGATA 2575954 30 86.7 0 ..........................TGTT | ========== ====== ====== ====== ============================== ========================================= ================== 95 30 99.9 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : GTGAATACCAAGAGGGTCAACAAAGTGCTCAAAAAAGCCAGGAAATACCTGAACTGGGTACAGAATTCGGTTCTGGAAGGTGAAATAAGTGAGGCCAATTACAGGAAACTGAAGATGGAGCTGCAAAATGTGATCAATGAGGAAGAGGACTCCTGCCTTTTTTACACCTTCCGCACGACAAAATATTCGCAGCGGGAATCTCTCGGGATAAAAAAAGGTGGAGATGACATGATAATTTAATTGGTCCGTTTTAATTAGAAGTAACCACTGAATTATTACTCAAAGCCGAAACCGGTCAGACGGAAAATTTGTCGTCGACCTCCGGTAGCGCAAAAACCCCGGGGGATCGACGACAAACCCAAAACAGGGCGCAGGCCTAGAAAAATAAGCAAATATTGCAAAACAGGCCTTTAAAAAAGAACATTTTTATGTTAAAATGCTGAAAGGTACAGAAAACCAAAAAGCCTTGCTGTACCTGATTTTTTGCGCCGCCCGAACGG # Right flank : GAAGACCACATTATTTGGCGGCAGTTTGATAACCGACAGTGGCGGTTGTCAAGGAACGCCAAATAAGGTTGTCAACAGGTTAGGCATTTCCGCCAATGGCGGTGGTCATTTTATCAAGGTACCGGAAAGCCCACCTTTATTGGCGGTGGGCTAAATATACTAAAACTTGCGAAAATCCTCTATCACCCTAAGCACCCCTTCCCGGTCAACCACATGGCTGGACTGAATCCGGGCATCAAGCATAGCTTGTATACATAGATTGTTTATCACCCTGGGGATTCCTTTGGAATATGCAAATATCTCTTTTACTGCATCGGAGCTAAAAATCTGACTGCGGGCTTTCACCACTTCTAAATGATGGGCTATGTAGGCGCCGGTTTCTTCTAAGGTCAGCCCACTCAAATGATAGCGGACCTGAATCCTTTGGGTTATGGCCTGGAAAATCTGCATGGCCAGGGTGCCCTTAAGTTCAGGTTGGCCTACCAGTATTAAGGCCATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //