Array 1 2826169-2822969 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAD01000006.1 Klebsiella pneumoniae strain JHTS002 tig00000316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2826168 28 100.0 33 ............................ TGTCATCCAGTTCGCTGATTGTTGCTTCCATGA 2826107 28 100.0 33 ............................ CAATTCATAAACAGGCCTTTTCTCTGTCGTAAG 2826046 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 2825985 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 2825924 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 2825863 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 2825802 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 2825741 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 2825680 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 2825619 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 2825558 28 100.0 33 ............................ CGATAAAGAACCCCCTCAGCGTCTTTGGTCAAC 2825497 28 100.0 33 ............................ TTATGAGCAAATGCCCTAAGTGCAATGGCACAA 2825436 28 100.0 33 ............................ TTGCATCCTGCCTACATGTGTCTTCAGGGTAAT 2825375 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 2825314 28 100.0 33 ............................ TGACACGCTTTCATCGTCAGCAATGAATGCCAC 2825253 28 100.0 33 ............................ TGATAGCTGATTGCCAGTCAGGCGATTGATGGC 2825192 28 100.0 33 ............................ TAGATGCATTTTGCTCAAGTCTACTGTGATTAA 2825131 28 100.0 33 ............................ CCAGCCAGCCATTGCAGATTCATAATCTGCACG 2825070 28 100.0 33 ............................ TACAAATCATTTCGTGGTGATGACGCCGCCACT 2825009 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2824948 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2824887 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2824826 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2824765 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 2824704 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 2824643 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 2824582 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 2824521 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 2824460 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2824399 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 2824338 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 2824277 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 2824216 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 2824155 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 2824094 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 2824033 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 2823972 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 2823911 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 2823850 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 2823789 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 2823728 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 2823667 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 2823606 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 2823545 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 2823484 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 2823423 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 2823362 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 2823301 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 2823240 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 2823179 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 2823118 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 2823057 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 2822996 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2835434-2834917 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAD01000006.1 Klebsiella pneumoniae strain JHTS002 tig00000316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2835433 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2835372 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2835311 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2835250 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 2835189 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2835128 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2835067 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2835062] 2835005 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2834944 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTATATTATTATTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTGATTTTATAAAAGTTATTTATAAGTTTCCCGGTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGTTGAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //