Array 1 27725-28418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGD01000025.1 Ligilactobacillus agilis strain UMNLA4 contig132, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 27725 30 100.0 38 .............................. GAGAGTGCTTTAAGACATACGCGTCAGTTTGGTTATGG 27793 30 100.0 35 .............................. GACCAGTACATGCCAAACGTCCCATCCATGTCGTA 27858 30 100.0 35 .............................. GGTAAGTCAGAGTTGGTCAGCGCTCTGGTTGCTGC 27923 30 100.0 35 .............................. AGTATCGTAGCTATATCGCACGAAAGCCAAAGGCT 27988 30 100.0 37 .............................. AATTCTGCCCTTCTATTGTAACAGGAGGTTTTAAAAA 28055 30 100.0 37 .............................. CGACAGCTCGCATTAACTCAGCCACCTGGTTATCCGG 28122 30 100.0 37 .............................. GCGTTTTGTCTTTTTTGAGCTGTCAGACGTTAAAATA 28189 30 100.0 39 .............................. AAGTCTAAGAGCGGTAGACCATTTCCGATGGGGCAACAG 28258 30 100.0 35 .............................. AAGAAAACGGCAAAATGGAGAGGTTGCCTATTTAC 28323 30 100.0 36 .............................. ACGATTGTAATTCTATCAATTGACCACCTTAATTTT 28389 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 36 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AATTAACAAAATGCTTGTTCAAAGCGATTACTCGCTAAGCGGCCAGTTTTACCAAAGCCTTGTCTGCTTCTAAACCTGCATTCGATAGCACACCCATTGCACTCGCCGTTTCCGCTAGACTGAATTTTGCCTGGTGGGCTGTTGATGATACATAGGACATCCCAACCCCTAAGGACTGAAACGAAGTTGATGTTACATTAGCCGATTATGCTAGGGTATTAACTGCTTTTTTAGTCTGAACGGTCATTTCTTTAGTTGATGATAACTGCTTACCGTTCTTATCAACAGTCATCCCAAAGCCTTCCAGAGTTTGGAAAGCTACTTCAACTACATCTTTAAAGTCATCACCTGACGCAATCGAACCTTGTAGCTCTGTATTCATTGCTCCAAGGGCTTGTTTGCCAGAGTAATCACGCTTAACTAGTTCCAAGTAAGCATCGGCAATTTCTTTTTGTGACTTCCCGTACCGAAGCGAATACTTTTCACCGTCAGCTTGCATC # Right flank : GGCTATGTTAAATATCCAGGCGTAGCCAAAATCATGATTTACATTCCTCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 216-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGD01000039.1 Ligilactobacillus agilis strain UMNLA4 contig156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 215 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 150 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 84 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : TCATTTTTCACGCGCTGATGTGGCATGTGATATTATCGATTCTATTTAACTTAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3718-2531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGD01000057.1 Ligilactobacillus agilis strain UMNLA4 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3717 28 100.0 33 ............................ TAGGGGTATCGACTTTTTTATCTATAGGGGGTG 3656 28 100.0 33 ............................ TTATTCCGGCTGAAGACCTTTTACTTGATGAAC 3595 28 100.0 32 ............................ ACAGATAAAGAAGGCGAAAATGAAAACTTTGA 3535 28 100.0 33 ............................ TTGAGGCGGTGACAATTGCCTTACTACGTAAAA 3474 28 100.0 33 ............................ TTGGTCAAGGTAAATTAGACGGCAAACTGTTTG 3413 28 96.4 33 T........................... TGATAAGTCAGAAGAAGTTCTTAAAGTAATTAA 3352 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 3291 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 3230 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 3169 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 3108 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 3047 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 2986 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 2925 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 2864 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 2803 28 100.0 33 ............................ TAATTTGTTGAGCATTAGATACTTCAGTTACCG 2742 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 2680 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 2619 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 2558 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.6 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : GAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1686-1844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGD01000083.1 Ligilactobacillus agilis strain UMNLA4 contig59, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1686 29 100.0 36 ............................. ATGTTGAAGATGAGTAGGTTGCGTAACGGGTCTTTC 1751 29 100.0 36 ............................. TAAACCGTTTCAGAGTTAAGTTTGACCTCCTGTAAG 1816 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GATCTATTTAACTTAAGAGGAATGTAAAG # Left flank : GGAATTTGAGGGATAAAAATTTATGAAACTTATCCGGAATTATTTGTATAATGCAGGATATCAGATGTTAGCACTAATAATTCCATTTATTACAGCTCCATATATTAGCCGGACTTTAAAACCCCATGGAGTGGGGATTTATGCCGATACAAATGCTTGGATTCAATGGTTTGTACTGAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGCATATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGGATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTGGTACAGGGTTTTGGTAGTGTAGA # Right flank : GATATTAGGTGCCTCTACTTGAGAATGCTGCTATAAATATAACCAGCCTATGATTGAATGCTCTCGTTTCAATCATAGGCTGGTTTAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTCTCGTCTGTCACCTTAACTTCCTTGCAGCGGTGCTTAGTAATGAAGCACAGTTCAGGCATTTTTAATAAGTCCAAGGTGAAATCCTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCGGGAAGCAGGTTTTCATCTGCTGGGTCCAATCCGACTCTATCAGCCAAATAATAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 4269-4894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGD01000083.1 Ligilactobacillus agilis strain UMNLA4 contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4269 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 4334 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 4400 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 4467 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 4533 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 4601 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 4666 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 4734 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 4800 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 4865 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTAGGGTGTTATAATCGTTGATATATCAAGCTTTATGTTTTATAAACGTTTTGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTATAATAACTTGCCCTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : GATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //