Array 1 20224-20990 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SDPH01000015.1 Haemophilus haemolyticus strain CCUG 15949 Contig_22, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     20224	    32	 100.0	    36	................................	TAAACGGAGAACATCTATTAACTGCTCATTTAATGG 	
     20292	    32	 100.0	    35	................................	TCGCCGAAAACTGGAAAGCGATTTCCAGTTCCGCA  	
     20359	    32	 100.0	    35	................................	TTAGCTCAATGCGGGCATGAAAGTGAAGGATTTAC  	
     20426	    32	 100.0	    33	................................	AACGCGTTCATGAAACCGACGCCATAATGATCT    	
     20491	    32	 100.0	    35	................................	TCGTGAGTACAAAGAGATGCTTAGACTTGCTGACA  	
     20558	    32	 100.0	    34	................................	GGCAAGTGTTGAGGGAGCTGATATTAACTATGGT   	
     20624	    32	 100.0	    34	................................	AGCGTTAATGCCAATCAAAACACCTACGCAAGGG   	
     20690	    32	 100.0	    37	................................	TTTAGACCCTAGCGACATCGAAGCAGTGGTTAAGAAA	
     20759	    32	  96.9	    34	.....................T..........	AACACGACTATTTGTTAGAGATTAAATGTCGCTT   	
     20825	    32	  93.8	    35	.............T.......T..........	TGTACATTTTTAGATCCTCTTATTGTTGAAAGTGA  	
     20892	    32	  93.8	    35	.............T.......T..........	TAGCTGAAACCCAAACTCGCCTTATCGCCAACATA  	
     20959	    32	  75.0	     0	.............T..AA...T..A..T..GT	|                                    	
==========	======	======	======	================================	=====================================	==================
        12	    32	  96.6	    35	GCAGCCGCCTCCGCGCGGCTGAGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAGCTATGTTAATGCTGATTACTTACGATATTTCTTTTGACGATCCAAATGGGCAAGCGCGATTGCGCCGCATCGCAAAACATTGCTTGGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCGTGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATGTACTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTCATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAATGGCGCTATGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTTCTTTTTTAGGTAGGGA
# Right flank :  AAGGATGAAATAAGACAAACGACTATGTCAGTAAATGGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAATATAATGATTTTTGGCCGCTCTTGTTTATACGATTTGAATTCAACTAAT

# Questionable array : NO	 Score: 6.09
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGAGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.10,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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