Array 1 1882526-1882914 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEME01000001.1 Escherichia sp. TW09308 contig_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1882526 28 100.0 32 ............................ TGTTGCTCACTCGTCATGCCGATGAGGGCGTC 1882586 28 100.0 32 ............................ GGTGGGATGGCCAGCGCGAAACGCACGCAGAC 1882646 28 100.0 32 ............................ TTTGATTTTTTCGAATAATTGAAGTATCCGTT 1882706 28 100.0 32 ............................ GTCCGTGAGGTCGTCCGACGATAGTTTTTTCA 1882766 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 1882826 28 100.0 32 ............................ CACATCAGCGTTATTCGCTGGCAATCGGGGTT 1882886 28 92.9 0 ....................T...C... | C [1882909] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1897206-1898253 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEME01000001.1 Escherichia sp. TW09308 contig_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1897206 28 100.0 32 ............................ AATCAGGTCGTCAATTTTTCGCGGCTGTGTAA 1897266 28 100.0 32 ............................ GCTGGCTTTAGCGCGTGAACAGTACTGTTAAC 1897326 28 100.0 32 ............................ GATCAGCATCCCGACAGCTTCCCCCATGGTCA 1897386 28 100.0 32 ............................ TCAATCCTCCCCGCCTGCGCCGCGTTGTAGTT 1897446 28 100.0 32 ............................ ACTGATGATAAGGGCGTCTGGTCACAACTCGT 1897506 28 100.0 32 ............................ GATAACGGCATCAGTGTTCGTGCCTGGATTAA 1897566 28 100.0 32 ............................ CAGCTCAGAGAAAACCGCTTTCAGCCTTGATA 1897626 28 100.0 32 ............................ AGTAGAAGACACGCAGATCGGCTGGAAAAATG 1897686 28 100.0 32 ............................ GGATTACCCTGGACAGCCAGGGATGTTAACAA 1897746 28 100.0 32 ............................ CAGCAGTACAGCCTCTTCCATGCCGTCAGCGC 1897806 28 100.0 32 ............................ GGCAGTGTGGCCACTTTTACGTTACGCGTAAT 1897866 28 100.0 32 ............................ TCGGAAAGCTTGTCAGCGTTGCTCACGTAACT 1897926 28 100.0 32 ............................ AAACCCCTCTGTCGTTACTTTGCATTCAGCCG 1897986 28 100.0 32 ............................ ACAGCAAACGGCGGGTGTATCGACTCGACGGG 1898046 28 100.0 32 ............................ AACTGCGGCCTTTGAGTCGGTCCCCATCGCAT 1898106 28 100.0 32 ............................ ACGATGCTGAATAAAATCACTGATATCATGAA 1898166 28 100.0 32 ............................ GTAGTGATAAACTCCGGCGCACCAGACGACTG 1898226 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGCCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //