Array 1 2036658-2037600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032833.1 Klebsiella pneumoniae strain INF237 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2036658 28 100.0 33 ............................ TAAAACAGGGCTTTCACTTCATAAAAACGCTAT 2036719 28 100.0 33 ............................ CACGAAGAAGGCCAGCCGCTGCCGACCGTTGGC 2036780 28 100.0 33 ............................ TCTGGGCCGCTGCTGCCTGTGCTGATTCAATCG 2036841 28 100.0 33 ............................ TAACCCGCACGAATTGCCGCCTGAGTGGCGTTG 2036902 28 100.0 33 ............................ CCATTCATGCATCTGCTGCTCCATTCGGGCTTT 2036963 28 100.0 33 ............................ CTATATACGCGAGAACTTATATTTTATGTATTA 2037024 28 100.0 33 ............................ TGAGCCCCATGCATGATGCTGCGGTCAGGGTCA 2037085 28 100.0 33 ............................ CGACTTCATGTCCATCATGCACTGGTACGGCGG 2037146 28 100.0 33 ............................ TCGACTCAAGGATATCGACAATAGAGACGAGCA 2037207 28 100.0 33 ............................ CAACTTTGGTAAGCGCATCAACGCATCGCTAAG 2037268 28 100.0 33 ............................ CCGAACGAATCACCTAACGCTGAAATAGGTGTT 2037329 28 100.0 33 ............................ TAAACCAGCCGGTAGAAATGTCAGCCGGTAGCA 2037390 28 100.0 33 ............................ CAGCGTGCTGAAATAAGCGTCCATCGCCTTACG 2037451 28 100.0 33 ............................ CAAGATACAGGCTGAGAGGGACATGCAGTATCG 2037512 28 100.0 33 ............................ CGATGGTCTATGCGCACCTGTCGCCTGACTACC 2037573 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAGTTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGAGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTCAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCTCAGATTCAGGTTATGTCGCTCAATGCGCTGAGTGTAACGCTTGCTGATAACGTGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2047133-2049113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032833.1 Klebsiella pneumoniae strain INF237 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2047133 28 100.0 33 ............................ TGGACAAGGATGAGCTCATCGAGCTGGCGGGTG 2047194 28 100.0 33 ............................ CGTCACGGATATAATTTGGCCGGGTATAGTGAT 2047255 28 100.0 33 ............................ CCACTACTACCGCGAAAGCGTCTTTTTCGTTGA 2047316 28 100.0 33 ............................ GGCGTCACCATTGAATCTGCCGGCGGCGTAGAA 2047377 28 100.0 33 ............................ CACCATTCATCAGGTTATTAGCCAGATTGGCCG 2047438 28 100.0 33 ............................ CCAGGTGGCAAGGTAGCCCCCCCAGATTGAGCC 2047499 28 100.0 33 ............................ CGCGGTAGTGCTCTGTTAATGCTGAAAACCCGT 2047560 28 100.0 33 ............................ CCCATACATCCAGAAGCCGATCCCCGAGACAAT 2047621 28 100.0 33 ............................ CTCATCAACCGCTCGCGGCATGATTAAGTCGCA 2047682 28 100.0 33 ............................ CGCATGGTTGACGGCGAGAGTTAATTTGTCAGT 2047743 28 100.0 33 ............................ TGTCGTCAATCTCAGCCTGAGATGGCATTTTCC 2047804 28 100.0 33 ............................ TGGCTCTGGCTTTACAGAACCGGCATTGCTTCT 2047865 28 100.0 33 ............................ TTTGCTGGTTTAGATCAGCAGGTAGAGCGCCTG 2047926 28 100.0 33 ............................ CGGATGTATGTAGCGGCAGCTGGCGCGACTATC 2047987 28 100.0 33 ............................ CGTCACTGCTATGGTCAAAGAGATTAAACGTAT 2048048 28 100.0 33 ............................ TCGAGCATTTCAGGTTCAGCGGGTTGGTCAGGT 2048109 28 100.0 33 ............................ TACGCGTTCAGTAGTTAGTCTGACAGGGTCGTA 2048170 28 100.0 33 ............................ CAGGAAGCCGGTATAGATGTCCATTGTCTTTTT 2048231 28 100.0 33 ............................ TCTGGGTCAGGGCTCTTGCGCGGCGGGTGTCGA 2048292 28 100.0 33 ............................ CGGAATGCAGAACGTTGCCAAGCACCCTTCCAA 2048353 28 100.0 33 ............................ CATTATTCGTTATCTGGAAAGTAAAGCCGATGA 2048414 28 100.0 33 ............................ CGTTATACCCACTGGAGAACAGGCGAGGAATTA 2048475 28 100.0 33 ............................ TTCAGGCTTATCACCCTCCTCTCCAGCGGTGAG 2048536 28 100.0 34 ............................ CCACGCTTATGCGGAGGGCGTCGAAGTTATGCTG 2048598 28 100.0 33 ............................ TCCACTAGGGGAGACTTCGGTCTCCCTTTTTTA 2048659 28 100.0 33 ............................ TGATGCTTTCGACCTTATTTTTTCATCAGCTAA 2048720 28 100.0 33 ............................ TGAAATGGCACTCAAATATCCCTACCCTGTCGA 2048781 28 100.0 33 ............................ TTAACCTGTGCAGTGTTGTTCTACTCTTACCCG 2048842 28 100.0 33 ............................ TCAGCATCGAGATGAAAGCGGATTTGCCGATAC 2048903 28 100.0 33 ............................ TAGGACGAATGTACAAACGCATTCAAAGGTGCT 2048964 28 100.0 33 ............................ TTCACCTCGAATGCGTCCACCACCTCATTTTCG 2049025 28 100.0 33 ............................ TAAGTCAAGAAAACGATACCCTGGATAAGTTAA 2049086 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 33 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCTCAGATTCAGGTTATGTCGCTCAATGCGTTGAGTGTAACGCTTGCTGATAACGTGCAGCTTTCCCTTCAGGCGTGATTCATAAAGCGGCCAGCCATCCGTCATCCATACCACCACATCAAATACCGACAGCAGCTCCAGAAGACGCTCCAGTGTGGTCAGAGTACGCTCACCAAAGACGTGTGCCACCACCGTCCTGCGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //