Array 1 398035-399441 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKT01000004.1 Flavobacterium columnare strain 1723 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 398035 36 88.9 82 ..GA.TA............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT AA [398042] 398155 36 91.7 29 C.G...A............................. AAGATAGAATTAAGATACGATTTAACAAC C [398159] 398221 36 100.0 29 .................................... AATAGAACCTACTTTCATTTCAACACGTT 398286 36 100.0 30 .................................... TTAATTCAATTAATTGTTTTAGCCCTTGGT 398352 36 100.0 29 .................................... CGACAAAAATAAATGTGGAAAAAACTGAT 398417 36 100.0 30 .................................... AAACCTAATAAATTATAGCCTTTCTTCAGG 398483 36 100.0 31 .................................... TATGACAGTTGATGCCTTAATAGAAAGCAAG 398550 36 100.0 30 .................................... GCATTGATTGTCCACCCTTAAGATAGGTAA 398616 36 100.0 30 .................................... AATTGAAATAAATCCAAGAGGCAAGCACGT 398682 36 100.0 30 .................................... CTTTGTTTTCTGTTTTTACAATTTCAGTAC 398748 36 100.0 30 .................................... CCTGTGTGATAACAAGTTTTCCACCGATAG 398814 36 100.0 30 .................................... AGATTATCCTAATATCATCAAGCAAAGCGT 398880 36 100.0 30 .................................... CAAATTCATCTGTTTCTTCATCGTAAGATT 398946 36 100.0 29 .................................... TGCGGAGTGGTTTTTTCTTTTTTTGGCGC 399011 36 100.0 30 .................................... TTTATAAAAATTAAATTAAACACTAATCGT 399077 36 100.0 30 .................................... GTTAATTATTTCGAGACGGTAGGCTACAAA 399143 36 100.0 30 .................................... TCGTTAACCACTAATTCACCATCAAAGGGT 399209 36 100.0 30 .................................... AAAAGCGATGATTTCATACTCTCATCAATA 399275 36 100.0 30 .................................... GCTCGTAGTCTTTATCGCAAAAAGTGATTA 399341 36 100.0 29 .................................... TCTTTCTATTTCGTCTACAAACTCCGTTA 399406 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 21 36 99.1 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATAGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACATCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTGTTT # Right flank : TAGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGAAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAACCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACATTGCTGCAAGGAACTAGCCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 762354-763637 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKT01000003.1 Flavobacterium columnare strain 1723 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================================================== ================== 762354 31 100.0 35 ............................... TCTTTTGCTTTTCCTGTTAATTTAAACATAGTTGG 762420 31 100.0 35 ............................... GCTCATGTTTTTCTATTTTATAAGTAGGTAGTTGG 762486 31 100.0 35 ............................... TTTGTATCTGTGTAGTATATTGTAAATTTTGTTGG 762552 31 100.0 34 ............................... GCTTCAATAGGTGCTACAAATTGAGCATTGTTGG 762617 31 100.0 34 ............................... TATAGGATATGAAATACCATTATTGAAATGTTGG 762682 31 100.0 34 ............................... GTAATGAAGTTTTCTATTTCTTCATCTAAGTTGG 762747 31 100.0 33 ............................... TGCAACTGAAATTGTAAAATTAAACCCAGTTGG 762811 31 100.0 86 ............................... ATTTTCTTTTTGTTCGTCAAAAATTGTGTTGTTGGGAAAGCCCTTATTTTACTCACGCTCTTTTCTATTGTTTTTTATAGGAGTTC 762928 30 77.4 35 .TG.ATGA......-................ TCTTATTCTTTCTAGTTCGTGCTGTTGCACGTTGG 762993 31 96.8 34 .....T......................... AAATCCGTTATCAATAATTGTAGGCATTGGTTGG 763058 31 100.0 35 ............................... TTTTCGGGGTCTTTTGTTTTTTCAATGCTTGTTGG 763124 31 74.2 62 .....................G.CGAG.GTT AAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTAAAACC GA [763143] 763219 31 83.9 35 ...TT.AA..T.................... TACGGCGATTTCAATTCTCCATAGGTTGCCGTTGG 763285 31 74.2 62 .....................G.CGAG.GTT AAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCGTTTAAAACC GA [763304] 763380 31 83.9 35 ...TT.AT..T.................... TTGAAAAACTTAGTAGTATTTGTTCCCACTGTTGG 763446 29 80.6 66 ....................--.GGG....G CGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACC 763541 31 83.9 35 ...TT.AA..T.................... GCTTTAAAGTCTTTTATAAATACAACTATGGTTGG 763607 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================================================================== ================== 18 31 91.9 43 GAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : ATTAAATATTATGATTATAATACTGAAAAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAAAGGAAAAAGCTAAAGAAATAGTTTAAAAGCTATTGCTCTTTGATATTTTGAGAAGGATTTAAAAAAAGAGTAGCTTTGGGGTATAAAGTTCAGAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTACGAGAGGCTTACCAACACTTAGGTTGG # Right flank : CAGGCTAACAATTGAAGTATTTCAATTTGGTTGGGAAAGCCCTTATTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATGTAATTTTTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTTAATTATTTAAAAAATAAATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTAAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCCATATACTGCCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAAAAAAATATTTGGGGAAGAAGCCAGCAAAAAT # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //