Array 1 9256-11133 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKF01000008.1 Gemella haemolysans strain CCUG 37985T contig_0000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9256 36 88.9 29 C...A...T...A....................... GAAAGATACAATTAGATTACTAACGGATA A,C [9258,9268] 9323 36 94.4 29 TG.................................. GAAAGATACAATTAGATTACTAACGGATA 9388 36 94.4 30 TG.................................. TATCATACGTTGGAAATAGAAGATAACATT 9454 36 100.0 30 .................................... GAATGTTGTAACACTTCTGCCAATCTTGGT 9520 36 100.0 30 .................................... TACTCATCTGGAGTACAGCTTTCATCAAGA 9586 36 100.0 30 .................................... TGTACTATTGAGATTATTCATTAAATCATC 9652 36 100.0 30 .................................... TAACTCCTAATCTTTACAACTTCCATAAAT 9718 36 100.0 30 .................................... AGGAGGTTTAACAATGAAATTAAAAATTGC 9784 36 100.0 30 .................................... GTATATACTAACGAACCATCAGCTGTATTT 9850 36 100.0 29 .................................... TATGGTGTTAAGTATGCAAACGGGGAATG 9915 36 97.2 30 ......................T............. AACTATCAGACACAATAGGGCAAGAGGCTC 9981 36 100.0 30 .................................... TTGTTCGGGATGTAATAACGCTCATCAGCG 10047 36 100.0 29 .................................... TTTGCTGTTCTATCAAACGTTTTTTTCTA 10112 36 100.0 30 .................................... GGAAATCTTAGTAAAGAAAACTTTGAAATG 10178 36 100.0 29 .................................... GCAAATTACCACCAACTGTCCAATTAGCC 10243 36 100.0 30 .................................... AACATGGATCAAGAGTTAAATAATGTCGAA 10309 36 100.0 29 .................................... ATTCTTGATGTTTGGGGTGGCGAATATGA 10374 36 100.0 30 .................................... AAAGTTTTCGGTACCTTTATTTGTGGCGGT 10440 36 100.0 30 .................................... CGGTTGGTGGGATTACATGGTAGACGGTCT 10506 36 100.0 29 .................................... ATCGAGGGTCGACAAATTAAAACTGAAAC 10571 36 100.0 30 .................................... GTGCTAGATGGAACGATGTAACAAATGCAC 10637 36 97.2 30 .....................G.............. AGCAAAGATAGAGCGAAAATTCGCCGTTTT 10703 36 100.0 30 .................................... AATCAAGTGTTCGATGGAAGAAATCTTGCA 10769 36 100.0 30 .................................... ATTAATTTAGATGGATGCCAAAATTTATAA 10835 36 100.0 30 .................................... ATTGATAGAGTTGAGAGTCTATGTCAGGAA 10901 36 100.0 29 .................................... AATGAATTTGAACAGCGTGTAGCTCAGTT 10966 36 100.0 30 .................................... CATCAAATTTACAGACAAACTGTAGGAAAT 11032 36 100.0 30 .................................... TCAAAGAGTAACATAATATCCACCTACTTT 11098 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.0 30 GTTTTGTAGAATTCAAAATTTACATATCTCTCAAAC # Left flank : GCCCTACTTCTATGAAAGCCGGTGTTGATGTAGTAAGTAGTTATGATGACTTCGATTATAAAACACTTGTTCTAGGAAGTATGTTCGAACTAGGACCTAACGAAGTTAACTATCACGGTGAAGTTGGAGAATATATTTCTGAAAACACAAACGATATCGACCTAGTAATCAGCGTTGGTGACCTAGCAGAAAACATTACAAAACAAATTAAAAACGACAAAATAAAAACACTACATTTCCCTACTACAGCAGAAGTTAGTGAATATCTAAAAAATAACAAACACAAAAACGAAGTTATCTTATTCAAAGCAAGCCGTTCTATGAAACTAGAGACTATTATTGAAGAGATAACGAAGTAAGAGAATATTTAAAAGCGTTTACGTTTATTGAGATTAACGTAAATGCTTTTTTCTTTGTTCTAGCAATAGTTCTACTTGAAATTATGTAAACAAAAATAAGATTATAGATCAAATAACACTCAATGTTATCTCATCAATAAT # Right flank : CCTCAAATTGAGATTTAGAGAAGAAATTTTGAATTTGGGTATAAAAAAATGGACCGACACCGATCCAGGCCCGAAGGCAATTTAGATAAAATCTTTATTTGAACTTGAATGTAAATTTTGAATCTACCTATATTATACAAGTATTTTCATAAAAATGCAATACTATATTTCACAATTATCTTTATCAAAAATATAAACTATTTCTTTATAATTTTTTGCAGATAAATTATTAAATTGTTGATACTCTACATTTATGATATTTATTTTATTCAAACATACTTCTTTATAAATTTCTATTATTTCTTCTTGCGTGAAAACGGTGTGAAGTCCTACTACAAAAATAATTTTAAAACAACATAGTTCTGTTAATACTTTTAAGAATTTTACAAAATTTTCTAAAATATCATCATTTTCAACATGTATTTTAAAATCCCCTAGTTTTAATAACGACGACATATCTATCTCTTCACCTTGTTCAATTTCTAAAGAACTATTAAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTAGAATTCAAAATTTACATATCTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //