Array 1 281067-282114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIKF01000001.1 Yersinia pseudotuberculosis strain IP32881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281067 28 100.0 32 ............................ TGCCGCGCTAATTCGATTCAGGGTATCGGCCA 281127 28 100.0 33 ............................ GAGTGTTTCGCCATCACGATCCAACAAATCTAT 281188 28 100.0 32 ............................ GAAGTACGGTCAGGAGCCGGGGGTGCAGTTTT 281248 28 100.0 32 ............................ ACCATGAGAGGAATGAGAATACTGACGACATT 281308 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 281368 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 281427 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 281487 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 281547 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 281607 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 281667 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 281727 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 281787 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 281847 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 281907 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 281967 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 282027 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 282087 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 108519-107289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIKF01000017.1 Yersinia pseudotuberculosis strain IP32881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 108518 28 100.0 32 ............................ AGCTACTATCGGGAGAACATCAGCGGTACAAA 108458 28 100.0 32 ............................ CCTTGGCAAGCCCATTCTGTTTCGGATAACTG 108398 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 108338 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 108278 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 108218 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 108158 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 108098 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 108038 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 107978 28 100.0 32 ............................ ACCAGCCTCCCAGCTCATAACCGTACGGCCAA 107918 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 107858 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 107798 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 107736 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 107676 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 107616 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 107556 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 107496 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 107436 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 107376 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 107316 27 85.7 0 ...................A-.A.T... | C [107292] ========== ====== ====== ====== ============================ ================================== ================== 21 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82383-83612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIKF01000006.1 Yersinia pseudotuberculosis strain IP32881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82383 28 100.0 32 ............................ TCCATGACACCAGCACGCGTCAACACCGAAAT 82443 28 100.0 33 ............................ CTGTTGAAAGCTCCCTGCCTGAGCACTAATCCC 82504 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 82564 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 82624 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 82684 28 100.0 33 ............................ GGTTGTTCAGGGTAAATAAATCTCACCAGCCAT 82745 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 82805 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 82865 28 100.0 32 ............................ GGCTTCGTTGCCCCACAACGCGGGGACCAACT 82925 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 82985 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 83045 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 83105 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 83165 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 83225 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 83285 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 83345 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 83405 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 83465 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 83525 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 83585 27 89.3 0 .....................CC.-... | T [83611] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //