Array 1 1661-3396 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOSO01000344.1 Klebsiella pneumoniae strain 1479 3647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1661 28 100.0 33 ............................ TGATCCCCCATTCGATTACCGAGTGGGCAGCGG 1722 28 100.0 33 ............................ TGATAGCGGCAACAACTTTCCATTTAGCCTTGA 1783 28 100.0 33 ............................ TAGCAGAAGCCTCAATGTCGATAGGTGAGTGTC 1844 28 100.0 33 ............................ CAATTTGACCGCTTGCGAAGAGTATTTTGCATG 1905 28 100.0 33 ............................ TAAATGCAACGAATGGTTTACAATGGATGTTGA 1966 28 100.0 33 ............................ CGATGTATTCTATGATGACATCATGGCTTCGCA 2027 28 100.0 33 ............................ CCACATGCCATCATGAGTGCCTGACATGGCATA 2088 28 100.0 33 ............................ TAAGCCTTACACTTCCGTACTGAAAAGCGGATT 2149 28 100.0 33 ............................ TCAGCGCATCATTGGCTACACCGGTAAGGGTGT 2210 28 100.0 33 ............................ CCCTTTGAGGCGCACATAAGCCTTTGCACGCTC 2271 28 100.0 33 ............................ TCAGATGAAGCTACTCGATACGGCAGACTGCAC 2332 28 100.0 33 ............................ TATTTCAATTTCGGCTCAAAAGGATGCTGTGAG 2393 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 2454 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 2515 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 2576 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 2637 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 2698 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 2759 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 2820 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 2881 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 2942 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 3003 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 3064 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 3125 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 3186 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 3247 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 3308 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 3369 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7883-7489 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOSO01000513.1 Klebsiella pneumoniae strain 1479 3985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7882 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 7821 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 7760 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 7699 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 7638 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 7577 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 7516 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : GTTTCCGCTGTATGCCCCCCATCCTTCGCAAGCACTA # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7608-7030 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOSO01000602.1 Klebsiella pneumoniae strain 1479 4163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7607 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 7546 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 7485 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 7424 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 7363 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 7302 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 7241 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 7180 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [7171] 7118 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 7057 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //