Array 1 6381-309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXDU01000245.1 Xanthomonas oryzae pv. oryzae strain BXO416 contig_245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 6380 31 100.0 34 ............................... TCGCGAGTAGGCGCGGTCCAGGGCCACGCAGTGG 6315 31 100.0 35 ............................... ATGGTCGCACGAGCCGAACGGTCATTCCAGCGACC 6249 31 100.0 35 ............................... TGCCGGGTCTGTGCTGGTGCACTCTGGCAACTCTG 6183 31 100.0 36 ............................... GATCTGCTGTATGCTCTGCGTGACAAGGACAACCAC 6116 31 100.0 35 ............................... AACTGGAGACTGCATATTGATGTGCCGTCAGAGAC 6050 31 100.0 35 ............................... TTCCGATTGTTTCCTGCTGCTATGGCACTGCTGGC 5984 31 100.0 34 ............................... CTCTGGGACACGGCGGATATGGAGATGTGGGAAA 5919 31 100.0 34 ............................... TATTCGACATCCTCAAGCACAAGGGTATAGAAGG 5854 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 5790 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 5724 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 5659 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 5593 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 5526 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 5460 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 5395 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 5328 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 5262 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 5197 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 5132 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 5067 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 5001 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 4936 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 4872 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 4807 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 4741 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 4674 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 4608 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 4543 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 4477 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 4411 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 4346 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 4282 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 4217 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 4152 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 4086 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 4020 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 3954 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 3887 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 3820 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 3754 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 3687 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 3622 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 3557 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 3490 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 3424 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 3358 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 3291 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 3225 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 3159 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 3090 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 3023 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 2958 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 2891 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2826 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2760 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2695 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2632 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2568 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 2504 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 2438 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2373 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2308 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 2243 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 2177 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 2112 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 2047 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1981 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1916 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1849 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1783 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1714 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1648 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1584 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1518 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1454 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1389 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 1324 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 1258 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 1190 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 1124 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 1058 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 992 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 927 31 100.0 33 ............................... TTGGTCTGCGATACTACTACTGGAACAGTGTTA 863 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 797 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 731 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 666 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 601 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 536 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 470 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 404 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 339 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 93 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGGGTCTTGTGAGCAGGCAAACCATCACCTGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //