Array 1 27-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000018.1 Fischerella thermalis CCMEE 5268 NODE_21_length_25665_cov_21.737230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 27 36 100.0 36 .................................... AATAAAAGAACAGGCAAAGCAGGTAGACGATTTTTA 99 36 100.0 41 .................................... GTGCTGAGGTTGCCTCAATATAAGCCTCTAGCTCAGCTTGG 176 36 100.0 35 .................................... TACCTAAGGTGGATCCAGTATCTGTAGCAGCAAAC 247 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 99.3 38 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GCGCCACAAAATAGCTCACCCGAAAGC # Right flank : TGGAAACCTAAATCACACCGACACGAGGCAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAGTCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACTTCACCTTCTTGTATATCTGGTAAGCTACTGATATCAACCATCAGTTGATCCATTGTAATTGCACCTATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTATAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTAGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTAATGCTCTATCGGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 38-875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000253.1 Fischerella thermalis CCMEE 5268 NODE_360_length_3213_cov_15.859632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 38 37 100.0 36 ..................................... CGAGCTAAAAAAAATTCGATCTCCTAAAAAAATGAT 111 37 100.0 37 ..................................... TGAGAGAAGTGAAATTGCTGAAACTAAAACCAAAAAA 185 37 100.0 35 ..................................... TGAATTTGGCGAGATCGCTCCCTGGGATAAATGGA 257 37 100.0 34 ..................................... GAGTATCAGCAATCATCTTCGCCAGCTCATCGTA 328 37 100.0 35 ..................................... GACTTGGACTTGGAAACATACTTGGATAGATAAGC 400 37 100.0 35 ..................................... CCCAACAATTAAATGTGAGATGCGCGGTCTCCTTA 472 37 100.0 37 ..................................... CTACTCCCAAAAAATAGGCCCTGAAATTACCGATAGG 546 37 100.0 40 ..................................... TCTTAATCTTAGATCAAATGCCCAGGCATTTCAAGCCCAT 623 37 100.0 35 ..................................... ACGAACTCCCGAGCGAGAAGACTAAATTCATAGGG 695 37 100.0 34 ..................................... ATATTACAATAACGAGACGAGAGGAATAAAATGA 766 37 97.3 36 .................T................... ACATCTGCGTTCGGGCAAGTCATGAAGTACATTGGT 839 37 86.5 0 .................T...............GGCG | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 98.6 36 GTTGCAACTAACACAAACCCCTATTAGGGATTGAAAC # Left flank : ACCGCGCAGAGACTCGGAATATCGAGAAAAGGAAGAGG # Right flank : GTTGCATATTTACAGGATGAATGTATTTGCTATTACAAAATAAAATTTTATTCTTGGTGTCTTCGTGACTTAGTGGTTCAATCTTTATTCCCAATGTGTGCAACGCCAAGAATTAAAACGAATTCCACACTTGTTAAGCGCTGAAATAAATTTCGCGCTTAAAGCTAAAGTTAGCTAGAAGCTAACTAAATAAATATAAGAGTGTAACTTGTTTTAATTTCTTTAAGCTTCTCGCTGTGAAATTTATTTCAAGATAAAAACGTCAGAATTGAAACATAAAAATAACCCCTAATTGATACCACAATTAGGGTTGCAACTGAAACAAATCCCAATCTTCAAGTAGTATATTCAGCGTTAATTTTCACGTAGTCATAACTTAAATCACAACCCCAAGCTTTACTGGAACCATGACCGTTACCAACACTTACAGAAATTAACACGGTATCTTCCTTGAGATAGGCACCCGCAGCTGCTTTTTGTAGATATTCACTTGCTGCTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACACAAACCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 34-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000238.1 Fischerella thermalis CCMEE 5268 NODE_331_length_8733_cov_18.128134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 34 37 100.0 35 ..................................... AAGTTGACGGTTAAAGCTACCGTGAAAGTTGTCAC 106 37 100.0 37 ..................................... TTTCCATGTCATCACCGCAACAAACTTTTGTGGTTGA 180 37 100.0 33 ..................................... ACTCATCGTTCGTCCAGTTGGTGATTCTACATA 250 37 97.3 31 C.................................... TTTAGAAGCTGAGGCTGCAGATGCGGCTTCT 318 37 94.6 0 CG................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.4 34 AAGTTTTCATCCCCGATAAGGGGAATTGAATAAAAAC # Left flank : AAATTGGTAGTTTTTAAGTTTTTGCGCTTAGTCA # Right flank : CCCTACTCTTTTAGAACCCTTACCACAAATAGGTTTGAAAGTACCATTTTCGCGGGGGGTCTATATTTGCTGTCAATAAGCTTATCTTAATGATAAAAAGCACTGTTTACAGCCACTTTAAACCCTTACCCAGAAATGCTTTCGCGGGGGTCAACGCTAGAATCAGGGTTTGGGAGTTCGCCATACCCCGGCGAAAAATTTAAGTATTGAACGTCAAAACAAACACACTCCTGTTCAATAGAAAAGTTTCATATTAAATTGTCAAGGTTCTGTTAAAGTTTTGCTTTGGTGGCTAGTAGTATAACAAATTACTCCTGACTTTTTAAAGTGCTACGCACTAACTTTGCATAAGTTTGCATTGCTTCATATAGTCTTTGTTTTAACTTTTGACTTTAAACTTTTAACTTGTCAGTCTTCCCCTGACAAATCCATGCTCCCCAGTAAAAAGGATGCTCCAGGGGCGTGTCTTCTTCATGGCAATCAATTTTACTTTGTGGTGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTTTCATCCCCGATAAGGGGAATTGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 8748-8431 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000238.1 Fischerella thermalis CCMEE 5268 NODE_331_length_8733_cov_18.128134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 8747 35 100.0 36 ................................... TGGCATTTGCCGAAGCTACATAGCTGCTGGTACATT 8676 35 100.0 35 ................................... AACTATTTCATGTCTGGTCACAGTGTGTATTGTTT 8606 35 100.0 35 ................................... AACGTTTCCGCGTTGACATTACCATGAACTAGATT 8536 35 100.0 36 ................................... CTCAGTCCAACGAACGACAGGAATTAGATGTTAGAT 8465 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 5 35 100.0 36 GTTTCCGTCCCCGTGAAGGGGAAGTGAATGAAAAC # Left flank : AACACGGCAATCTACCCGCCGCTCTACCTCGCTGTCATTTA # Right flank : CCTACTCTTCTAGAACCCTTACCACAACTGGGTTTGAAAGTACCATTTTCGCGGGGGTCTATATATTGCTGTCAATAAGCTTATTTTAATGATAAAAAGCACTGTTTGCAGCCACTTTAAACCTTACCCAGTAAGTCTTTCGCGGGGGTCAACGCCAGAATCAGGGTTTGAGAGTTCGTCGTACCCCCGCGAAAAATTTACGTATAGGAAGTAAAAAGAAGTACTCTTGTTTTCCGTTGGAAACTTTACTTAGATCTTGCACCTAATTTTTCGTCCGCCAAAAAATAGATCTCACTTGTCTTTAGCTTAAGTAAGCTTTAGCTTACTAAATATATATCTGAGTCTGTTTTAACGGACTTGGGCTATGAGGGTTGAAATTCAGTTTAAGGCGTACTCAGGGCGAGGTGCAATCCAGGTGAGTTTAGATTAAATTGTCAAGGTTCTGCATTACTCCTCTGAACAATAACAAATTACGCAAGATATTCAAAGTACAATCTGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAAGGGGAAGTGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 339-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000305.1 Fischerella thermalis CCMEE 5268 NODE_463_length_606_cov_15.638614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 339 34 82.9 34 A...C.G.....-C.......G............. AGATGATGGATGAGGTAAACGGAACGACCGAATA 407 35 97.1 34 ....C.............................. ATTTGAGGGCAACATCCAATACTTGCAGCTCGCA 476 35 100.0 37 ................................... CAGGTTGCAACGCAAGTCTGGGCATCAATGATCGTAG 548 35 100.0 38 ................................... ATTGCTATTCTCGCTTCTTTGCTTGTTGCAGGGTTAGG 621 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 96.0 36 GTTTTCATCCCCGATAAGGGGAATTGAATAAAAAC # Left flank : GGGTAATTGGTAATGGGTAATTGGTAATGGGTAATTGGTAATGGGTAATTGGTAATTAAGATAATGATGATTTTTCCATGCCCGATGCCTAATGCCCAATACCCAACAAAGAAGCATAATATTGTAACCATGTTGTAACCAATTAGCCGAACTTGATATGAGTCCGTTTCCAACGGACTTGTGCTATTAGCCTTGGAATTTATTTATTGGCGGGATATGGCGTAGGTACAAGATATCAGTTGAGATTTCAAAGACAACCAAGGTTAAGGTTTTCGTCCCCCTGGGGGATTAAATAAAAACATGTAGAGATGTAGCAATGCTACGTCTCTACCACAAAAA # Right flank : GTGTGTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATCCCCGATAAGGGGAATTGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 3466-133 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000080.1 Fischerella thermalis CCMEE 5268 NODE_103_length_30258_cov_19.111012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3465 37 100.0 35 ..................................... ACCACTTATCCCAAGGGGCGATCTTCCCGAATTCA 3393 37 100.0 37 ..................................... AGCGCCTCCCGCTCTAGCCGAAACCACCACCAGCACG 3319 37 100.0 36 ..................................... ACTGCTATTCTGATTTTGTCTTCGCTACTTTTACCG 3246 37 100.0 35 ..................................... AAGCTCCGGGCTAGGAGAGGGGATGCGGGCATTTT 3174 37 100.0 33 ..................................... TAAAAATCCCTATGCAGATAAGCAAAGAGTAGA 3104 37 100.0 36 ..................................... GGGATGCGGGCAACTTCCTTAAGCTGATTAAGAATT 3031 37 100.0 39 ..................................... TCTTAATAATGCCAAGGGAAAGTCATCGGAAGCTTTTGA 2955 37 100.0 31 ..................................... CCATTTTGGAAAGATGTCAAAACCGCGTCAG 2887 37 100.0 34 ..................................... TGGCAAATCTCTTTATCTGCTCGAAATTGCTTTT 2816 37 100.0 34 ..................................... TGATATTCTCGAACATATCCAGGAAGAATTTCAG 2745 37 100.0 35 ..................................... GTTTCCGCGAAGGCAGCGGGAGCTCCCGCAAAAGT 2673 37 100.0 36 ..................................... TCCAAGCCCGGCCCCGGCAATTCTGCCTCAGCCTCA 2600 37 100.0 35 ..................................... TTAAATAATGATCCTCGATTCAGAGCGAATTTTCT 2528 37 100.0 35 ..................................... ATTCTATGCTCTCATCTTTCATCTCTGCATGTATT 2456 37 100.0 38 ..................................... GAGCTAAAGGCTCAATGCCCAAAAAATACGCCTTGAAA 2381 37 100.0 34 ..................................... TTCGCACTTCATTGGATGCCTATGCCCAGCAGCA 2310 37 100.0 35 ..................................... CGAGTGCGAGTGCTTTTCTTAACTTTCATAAAAAT 2238 37 100.0 35 ..................................... ATAATGCCAAGGGAGAAGCCTCGGATGATTCCTGA 2166 37 100.0 35 ..................................... GGGCCTTTTGGATCTGGCAAGTCTCTTTATATGCT 2094 37 100.0 38 ..................................... CTGGGAGCGAAAAAGCCTTAGCATTTCGCCCCCCTTGA 2019 37 100.0 33 ..................................... CTTACTTCCTTCAAGAACGGCACAAGCAAAATG 1949 37 100.0 36 ..................................... TTTTCTTCATTTTTTATTCAATCCGCTCCGAACAAC 1876 37 100.0 36 ..................................... GCAGCTGCACTAGGGATGGCTTCCGCGATCTTCGGC 1803 37 100.0 35 ..................................... TCGCCTATCTTTTGAAAGGAATCGAAGCAGGAAAA 1731 37 100.0 36 ..................................... CCAGGCTGCGCGAGATTCTGCTATCGAGAGCCTCGT 1658 37 100.0 34 ..................................... ATGGCCTTTCTCAATCATCTCTCGATCCCCTTCG 1587 37 100.0 36 ..................................... CCTCTCAGGAGCTTGCCTGGAAGAAGCTTCGATCCA 1514 37 100.0 46 ..................................... ATCCCTTAGCAGAGATGGCTTCGGCCGCAAAGCAAAAAAAAACGAA 1431 37 100.0 41 ..................................... ATCCCTTAGCGGATTCCATCTTTGGGATCCATCCATTAAGA 1353 37 100.0 34 ..................................... GAAAAAGGTTCCCATTGGATACAGATACAGACAC 1282 37 100.0 41 ..................................... AGATGTGGCTGGCACAGTAAAAGTAGCAAATCCGAAATCAG 1204 37 100.0 36 ..................................... AAGAGGAAGGAAGCTCCACTGAACACTAAGAGCGGA 1131 37 100.0 34 ..................................... CGGGAATCTGGAAAGAAGGGCATTGAGGGCAATT 1060 37 100.0 33 ..................................... CCAGCTCCGGCTCCGGGCCCCGCCCCGGCCCCC 990 37 100.0 36 ..................................... AGGTGATGGGAATTTGAATTTTTATTTCGATCGCGG 917 37 100.0 38 ..................................... GAATAAAGATTTCTAAGCTCAGCAAGAAGCCAATTAAG 842 37 100.0 36 ..................................... CCGGAATGGTATCATTTTGGTACGATTTCCCCTTGG 769 37 100.0 41 ..................................... ATTCAATTCTTCTTTATGCAAATATCTTTTCGGCCTATTGG 691 37 100.0 37 ..................................... TTATTCCCTTTCCGCTTTGGCAGAGAGATTGATTGAA 617 37 100.0 42 ..................................... ACGCAGAGCCACTGATAACTCCGCAATTCCACGCATCAGTGG 538 37 100.0 33 ..................................... AGGAAATATCGATGCCCCCGCTGCGATCGCTCT 468 37 97.3 40 ....................................G GTGAGATATCCCCCAGTAAAATTTTCTTTGATCCTCCAAG 391 37 97.3 35 ....................................G TTTCCTCCCTGTTCTAAAGAGACAGGGCTTCCAAA 319 37 97.3 36 ....................................G CTTTCTATAGGATCTGCCACTGCCGCCAGCGCCGGG 246 37 97.3 36 ....................................G TTCAGCATCGCCTGCTGGATCCCCAGTACCTGATAG 173 37 94.6 0 .............................G......T | T,C,GC [135,137,141] ========== ====== ====== ====== ===================================== ============================================== ================== 46 37 99.6 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CCCCGAAGATAAACGTCGTACCAAAATCCACAACATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACTTAACTGAAACTCAGTATGCTAAACTGAGGGCGCGGTTGGCAAAACTCATTAAACCCAATGAAGACAGCATCCGCTTCTATTTTCTTTGTGGTTGCTGTCAGGGTAAAATTGAGCGCATTGGCGGCGAAATGCCAATGGATACCACGGTGTTTTTTGCTTAGAGTTTGCGTCAACCAGTAGGTGTTTTAGAGATGAAATCTAATTTTATGGCTCAAAGCCTTATCCATTCTAATTTTGAAGCTGCTCAAACCAAAATGAGGTTGACGCACATCCGGAAACTATTACCAGTCAAGCTTTTGAGACTATTTTTACAAACATCATCTTGACACTTTAATGTCTGAAAAGCTATATTGAATGGAGATTGACGGAACTGAACCTTGAAAAGTAAATATACTAAGGCTTCTATATTGAGCT # Right flank : TAGAGGGATGAATTGAGGTCATCTACTGTGCAATGTCCATACTGTGGTTCTACGGAAATTAGAAAGAATGGGAAGCACAGAGGTAAACGCTCATCACATTTGTACTAACTGCGCTCGCCAATTTATCGACGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 18804-19130 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQA01000067.1 Fischerella thermalis CCMEE 5268 NODE_90_length_19117_cov_21.524612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 18804 37 100.0 34 ..................................... CACGATGACTTCCTAGACACCATGGCTATGTTGG 18875 37 100.0 35 ..................................... CAGATTATTCTAAATAGAACTACTACTACAGTAGA 18947 37 100.0 40 ..................................... ATCTCCATAGCTGCTGCTACAGAAATGCCGAGCATTTCAG 19024 37 100.0 33 ..................................... ACTTCAAAAGCCCCGATTCGCTTATTGGCAGAA 19094 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 36 GTTGCAACTAACACAAACCCCTATTAGGGATTGAAAC # Left flank : CCAATTATTGATAGTCTTTTTATCTGCCACTGCCACGGCCATCGCTATCGATATTAGCTGCGTACTGCCCAAACGCTTGAAGTTTCATAAGATGCTCCCTAATGACCTATCTAATATCATCTACAAAAACGAGTGAAAATAACAGGATCACTGACCTAGCAATTGGCATTTTGGCAGAAAGCGAACTTCAAGACTTTTTTAATCAGATAATAATTAATGATCGTCAATGGGAAATATTGAGTTTCTGTAATTGCGCCAACCTGTAGGTGTTTGACACACAGAGGAAAATTTTATGCTTGAAAGCTTTGTCAGTTCTAGGTTTGAACTCCTCACATCTCATCAGAGGTTGGCGCAATGTCTAAAAATCTGAGCAGTAAAGCTTTTGAGCCGATTTTTTCCGAGCCACTCTTGACACTGCGATCGCTCAAACGCTATATTTACTCTAGGTCTGCACCATTGAACCTTGAAAACCTAATATAGCAAGGCTTCTAAGTTGAGCA # Right flank : ATCGGAAGCTTTTGATGATTCCTGAGATGACTCCTGAAGGTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACACAAACCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //